Wall clock time and date at job start Tue Mar 31 2020 18:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34815 * 126.59492 * 2 1 4 4 C 1.36595 * 106.84305 * 180.02562 * 3 2 1 5 5 C 1.47514 * 125.77255 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00571 * 352.80452 * 5 4 3 7 7 N 1.34782 * 120.00091 * 172.80040 * 5 4 3 8 8 C 1.46925 * 120.62649 * 352.40571 * 7 5 4 9 9 C 1.53192 * 108.77651 * 233.87673 * 8 7 5 10 10 C 1.53042 * 109.31299 * 305.36906 * 9 8 7 11 11 C 1.53044 * 109.53767 * 61.36369 * 10 9 8 12 12 H 1.09007 * 109.52508 * 58.60126 * 11 10 9 13 13 C 1.52997 * 109.49579 * 178.67951 * 11 10 9 14 14 H 1.09001 * 110.63924 * 62.97935 * 13 11 10 15 15 C 1.55153 * 110.72411 * 299.83780 * 13 11 10 16 16 C 1.54908 * 101.58386 * 206.13703 * 15 13 11 17 17 N 1.47423 * 104.83268 * 37.00846 * 16 15 13 18 18 C 1.36940 * 125.64995 * 155.91386 * 17 16 15 19 19 H 1.07997 * 119.99466 * 6.55387 * 18 17 16 20 20 C 1.38812 * 119.99962 * 186.56305 * 18 17 16 21 21 N 1.31615 * 120.00068 * 8.27867 * 20 18 17 22 22 Si 1.86797 * 119.99871 * 188.28632 * 20 18 17 23 23 H 1.48503 * 109.47150 * 84.98206 * 22 20 18 24 24 H 1.48494 * 109.47334 * 204.97970 * 22 20 18 25 25 H 1.48503 * 109.47113 * 324.98172 * 22 20 18 26 26 C 1.47026 * 108.70368 * 335.87391 * 17 16 15 27 27 C 1.46924 * 120.63302 * 172.68393 * 7 5 4 28 28 N 1.34406 * 108.45281 * 0.23730 * 4 3 2 29 29 N 1.28761 * 109.52291 * 359.59175 * 28 4 3 30 30 H 1.09002 * 109.47261 * 90.00073 * 1 2 3 31 31 H 1.08997 * 109.46728 * 210.00238 * 1 2 3 32 32 H 1.09006 * 109.46876 * 330.00222 * 1 2 3 33 33 H 1.08009 * 126.58063 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.59123 * 353.66948 * 8 7 5 35 35 H 1.09005 * 109.58453 * 114.09472 * 8 7 5 36 36 H 1.09001 * 109.50190 * 185.41576 * 9 8 7 37 37 H 1.09002 * 109.51970 * 65.33894 * 9 8 7 38 38 H 1.08994 * 109.46303 * 301.34337 * 10 9 8 39 39 H 1.09005 * 109.44576 * 181.37292 * 10 9 8 40 40 H 1.09005 * 111.00431 * 324.21056 * 15 13 11 41 41 H 1.09004 * 111.00697 * 88.02184 * 15 13 11 42 42 H 1.09002 * 110.36793 * 155.84605 * 16 15 13 43 43 H 1.09000 * 110.36450 * 278.17045 * 16 15 13 44 44 H 0.97000 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.87963 * 241.64274 * 26 17 16 46 46 H 1.08996 * 109.88489 * 120.47675 * 26 17 16 47 47 H 1.09000 * 109.58852 * 245.91193 * 27 7 5 48 48 H 1.09008 * 109.58517 * 6.33236 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6208 -0.0006 5 6 4.7704 1.4558 -0.0013 6 8 4.6802 2.6612 -0.1334 7 7 5.9815 0.8826 0.1444 8 6 6.0996 -0.5452 0.4701 9 6 6.9767 -0.6956 1.7171 10 6 8.3152 0.0084 1.4823 11 6 8.0732 1.4999 1.2390 12 1 7.5599 1.9307 2.0987 13 6 9.4141 2.2084 1.0371 14 1 9.9194 1.8288 0.1490 15 6 10.3138 2.0486 2.2910 16 6 11.2141 3.3051 2.1901 17 7 10.3272 4.3645 1.6758 18 6 10.5088 5.7108 1.8482 19 1 11.4135 6.0790 2.3089 20 6 9.5298 6.6022 1.4311 21 7 8.3624 6.1532 1.0213 22 14 9.8692 8.4389 1.4514 23 1 10.5588 8.8288 0.1952 24 1 8.5862 9.1783 1.5616 25 1 10.7327 8.7700 2.6133 26 6 9.2161 3.7362 0.9463 27 6 7.2086 1.6751 -0.0134 28 7 3.5238 -0.7229 -0.0062 29 7 2.3008 -1.1256 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.9561 2.1162 -0.0004 34 1 5.1103 -0.9581 0.6672 35 1 6.5586 -1.0738 -0.3654 36 1 7.1516 -1.7534 1.9135 37 1 6.4737 -0.2450 2.5727 38 1 8.8065 -0.4265 0.6120 39 1 8.9504 -0.1181 2.3591 40 1 9.7184 2.0668 3.2040 41 1 10.9073 1.1362 2.2324 42 1 11.5985 3.5764 3.1734 43 1 12.0359 3.1282 1.4962 44 1 7.6782 6.7761 0.7302 45 1 9.2329 4.0508 -0.0972 46 1 8.2672 4.0149 1.4044 47 1 7.7581 1.3276 -0.8883 48 1 6.9510 2.7273 -0.1353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961153801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:24 Heat of formation + Delta-G solvation = 98.003779 kcal Electronic energy + Delta-G solvation = -29415.165633 eV Core-core repulsion = 25508.398986 eV Total energy + Delta-G solvation = -3906.766647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.45540 -39.84243 -38.03403 -36.49372 -35.00769 -33.35853 -32.03357 -31.42487 -30.94126 -28.76296 -28.12592 -27.07776 -25.61632 -24.43639 -23.11375 -22.72523 -22.24785 -20.86784 -19.89433 -19.38733 -19.16931 -17.54441 -16.72455 -16.57918 -16.36147 -15.82418 -15.28789 -14.83067 -14.80626 -14.28798 -14.19703 -14.04176 -13.73991 -13.62041 -13.54688 -13.24129 -12.87016 -12.68427 -12.45941 -12.34021 -12.17679 -11.80603 -11.39444 -11.36507 -10.96033 -10.86793 -10.72804 -10.70570 -10.67330 -10.42599 -10.32118 -10.14061 -9.93533 -9.74324 -9.64575 -9.56012 -9.47620 -9.37284 -8.49720 -8.35847 -6.67602 -5.55524 -2.92847 0.90324 1.56830 1.75985 3.08587 3.33307 3.48148 3.52670 3.54977 4.01551 4.03935 4.50339 4.53702 4.60913 4.75335 4.82715 4.93957 5.08353 5.11529 5.17597 5.23512 5.36437 5.47174 5.59500 5.62661 5.76215 5.82221 5.85419 5.93166 6.01826 6.04240 6.11891 6.14729 6.23416 6.24558 6.29660 6.44784 6.50903 6.59177 6.73412 6.75947 6.84773 6.86296 7.11301 7.52497 7.60854 7.73386 7.79324 7.98230 8.29890 8.42074 9.34431 9.96030 10.63316 11.52551 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.003091 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.942397 B = 9056.706922 C =10758.423068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.364 5.364 3 C 0.093 3.907 4 C -0.091 4.091 5 C 0.596 3.404 6 O -0.527 6.527 7 N -0.594 5.594 8 C 0.086 3.914 9 C -0.133 4.133 10 C -0.115 4.115 11 C -0.081 4.081 12 H 0.075 0.925 13 C -0.107 4.107 14 H 0.064 0.936 15 C -0.123 4.123 16 C 0.132 3.868 17 N -0.606 5.606 18 C -0.231 4.231 19 H 0.075 0.925 20 C -0.008 4.008 21 N -0.913 5.913 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.176 3.824 27 C 0.116 3.884 28 N -0.204 5.204 29 N -0.073 5.073 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.207 0.793 34 H 0.122 0.878 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.015 0.985 44 H 0.252 0.748 45 H 0.023 0.977 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.626 -17.589 -1.549 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.149 5.149 3 C -0.064 4.064 4 C -0.230 4.230 5 C 0.381 3.619 6 O -0.402 6.402 7 N -0.326 5.326 8 C -0.037 4.037 9 C -0.172 4.172 10 C -0.153 4.153 11 C -0.101 4.101 12 H 0.093 0.907 13 C -0.127 4.127 14 H 0.082 0.918 15 C -0.161 4.161 16 C 0.006 3.994 17 N -0.332 5.332 18 C -0.359 4.359 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.560 5.560 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.209 1.209 26 C 0.052 3.948 27 C -0.005 4.005 28 N -0.078 5.078 29 N -0.052 5.052 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.223 0.777 34 H 0.139 0.861 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.041 0.959 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.824 -18.260 -1.677 23.579 hybrid contribution -0.040 1.984 -0.053 1.986 sum -14.864 -16.275 -1.730 22.109 Atomic orbital electron populations 1.22202 0.72530 1.05807 1.04783 1.50327 1.09089 1.05698 1.49828 1.23423 0.90093 0.95063 0.97814 1.21591 0.94828 0.90162 1.16408 1.16831 0.81599 0.86125 0.77296 1.90887 1.85820 1.13094 1.50405 1.47887 1.05360 1.10752 1.68568 1.22445 1.03631 0.80641 0.96987 1.21928 0.96623 1.00577 0.98049 1.21624 0.96463 0.95359 1.01814 1.21424 0.95870 0.94724 0.98082 0.90663 1.22419 0.93667 0.99120 0.97491 0.91758 1.22737 0.98053 0.97481 0.97847 1.21570 0.92959 0.88484 0.96417 1.44490 1.25659 1.01165 1.61888 1.19007 1.01535 0.80367 1.35017 0.90704 1.24809 0.95750 0.97857 1.02034 1.69942 1.04001 1.32662 1.49438 0.86198 0.76808 0.85448 0.77666 1.21693 1.21770 1.20863 1.21299 0.92992 0.84842 0.95688 1.21831 0.83278 0.98043 0.97384 1.74422 1.12036 1.10435 1.10880 1.81986 0.93797 1.06802 1.22657 0.89208 0.88108 0.88310 0.77664 0.86100 0.91721 0.91101 0.91875 0.92081 0.91603 0.91866 0.92519 0.94591 0.96683 0.93723 0.95863 0.91395 0.91652 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.26 11.51 59.85 0.69 0.95 16 2 N -0.36 -3.07 4.03 -67.85 -0.27 -3.34 16 3 C 0.09 0.92 11.32 -16.83 -0.19 0.73 16 4 C -0.09 -1.21 6.69 -83.55 -0.56 -1.77 16 5 C 0.60 9.77 7.67 -12.48 -0.10 9.67 16 6 O -0.53 -10.44 16.30 5.28 0.09 -10.35 16 7 N -0.59 -9.14 2.97 -174.00 -0.52 -9.65 16 8 C 0.09 1.09 6.08 -3.71 -0.02 1.06 16 9 C -0.13 -1.57 6.08 -26.61 -0.16 -1.73 16 10 C -0.11 -1.49 4.97 -26.69 -0.13 -1.62 16 11 C -0.08 -1.34 1.74 -90.50 -0.16 -1.49 16 12 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 13 C -0.11 -2.00 2.49 -88.79 -0.22 -2.22 16 14 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.12 -2.20 5.38 -24.59 -0.13 -2.33 16 16 C 0.13 2.85 7.23 -2.53 -0.02 2.83 16 17 N -0.61 -16.13 3.39 -170.07 -0.58 -16.71 16 18 C -0.23 -6.69 10.26 -15.06 -0.15 -6.85 16 19 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 20 C -0.01 -0.22 5.44 -17.43 -0.09 -0.32 16 21 N -0.91 -27.86 10.49 55.49 0.58 -27.27 16 22 Si 0.91 22.89 29.56 -169.99 -5.03 17.86 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.18 4.38 4.33 -3.06 -0.01 4.37 16 27 C 0.12 1.96 5.48 -3.71 -0.02 1.94 16 28 N -0.20 -2.64 8.81 32.84 0.29 -2.35 16 29 N -0.07 -0.84 13.78 60.35 0.83 -0.01 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.21 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.12 1.53 4.14 -74.93 -0.31 1.22 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.83 7.20 -51.93 -0.37 0.45 16 40 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 41 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.02 0.64 8.03 -51.93 -0.42 0.22 16 46 H 0.07 1.91 6.45 -51.93 -0.33 1.57 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.11 2.17 6.55 -51.92 -0.34 1.83 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -36.05 377.67 -7.85 -43.89 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.65 Total: -0.97 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.28 Total: 3.21 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.34 Total: -59.34 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.05 -7.85 -43.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961153801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.898 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds