Wall clock time and date at job start Tue Mar 31 2020 18:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34815 * 126.59492 * 2 1 4 4 C 1.36595 * 106.84305 * 180.02562 * 3 2 1 5 5 C 1.47514 * 125.77255 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00571 * 352.80452 * 5 4 3 7 7 N 1.34782 * 120.00091 * 172.80040 * 5 4 3 8 8 C 1.46925 * 120.62649 * 352.40571 * 7 5 4 9 9 C 1.53192 * 108.77651 * 233.87673 * 8 7 5 10 10 C 1.53042 * 109.31299 * 305.36906 * 9 8 7 11 11 C 1.53044 * 109.53767 * 61.36369 * 10 9 8 12 12 H 1.09007 * 109.52508 * 58.60126 * 11 10 9 13 13 C 1.52997 * 109.49579 * 178.67951 * 11 10 9 14 14 H 1.09001 * 110.63924 * 62.97935 * 13 11 10 15 15 C 1.55153 * 110.72411 * 299.83780 * 13 11 10 16 16 C 1.54908 * 101.58386 * 206.13703 * 15 13 11 17 17 N 1.47423 * 104.83268 * 37.00846 * 16 15 13 18 18 C 1.36940 * 125.64995 * 155.91386 * 17 16 15 19 19 H 1.07997 * 119.99466 * 6.55387 * 18 17 16 20 20 C 1.38812 * 119.99962 * 186.56305 * 18 17 16 21 21 N 1.31615 * 120.00068 * 8.27867 * 20 18 17 22 22 Si 1.86797 * 119.99871 * 188.28632 * 20 18 17 23 23 H 1.48503 * 109.47150 * 84.98206 * 22 20 18 24 24 H 1.48494 * 109.47334 * 204.97970 * 22 20 18 25 25 H 1.48503 * 109.47113 * 324.98172 * 22 20 18 26 26 C 1.47026 * 108.70368 * 335.87391 * 17 16 15 27 27 C 1.46924 * 120.63302 * 172.68393 * 7 5 4 28 28 N 1.34406 * 108.45281 * 0.23730 * 4 3 2 29 29 N 1.28761 * 109.52291 * 359.59175 * 28 4 3 30 30 H 1.09002 * 109.47261 * 90.00073 * 1 2 3 31 31 H 1.08997 * 109.46728 * 210.00238 * 1 2 3 32 32 H 1.09006 * 109.46876 * 330.00222 * 1 2 3 33 33 H 1.08009 * 126.58063 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.59123 * 353.66948 * 8 7 5 35 35 H 1.09005 * 109.58453 * 114.09472 * 8 7 5 36 36 H 1.09001 * 109.50190 * 185.41576 * 9 8 7 37 37 H 1.09002 * 109.51970 * 65.33894 * 9 8 7 38 38 H 1.08994 * 109.46303 * 301.34337 * 10 9 8 39 39 H 1.09005 * 109.44576 * 181.37292 * 10 9 8 40 40 H 1.09005 * 111.00431 * 324.21056 * 15 13 11 41 41 H 1.09004 * 111.00697 * 88.02184 * 15 13 11 42 42 H 1.09002 * 110.36793 * 155.84605 * 16 15 13 43 43 H 1.09000 * 110.36450 * 278.17045 * 16 15 13 44 44 H 0.97000 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.87963 * 241.64274 * 26 17 16 46 46 H 1.08996 * 109.88489 * 120.47675 * 26 17 16 47 47 H 1.09000 * 109.58852 * 245.91193 * 27 7 5 48 48 H 1.09008 * 109.58517 * 6.33236 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6208 -0.0006 5 6 4.7704 1.4558 -0.0013 6 8 4.6802 2.6612 -0.1334 7 7 5.9815 0.8826 0.1444 8 6 6.0996 -0.5452 0.4701 9 6 6.9767 -0.6956 1.7171 10 6 8.3152 0.0084 1.4823 11 6 8.0732 1.4999 1.2390 12 1 7.5599 1.9307 2.0987 13 6 9.4141 2.2084 1.0371 14 1 9.9194 1.8288 0.1490 15 6 10.3138 2.0486 2.2910 16 6 11.2141 3.3051 2.1901 17 7 10.3272 4.3645 1.6758 18 6 10.5088 5.7108 1.8482 19 1 11.4135 6.0790 2.3089 20 6 9.5298 6.6022 1.4311 21 7 8.3624 6.1532 1.0213 22 14 9.8692 8.4389 1.4514 23 1 10.5588 8.8288 0.1952 24 1 8.5862 9.1783 1.5616 25 1 10.7327 8.7700 2.6133 26 6 9.2161 3.7362 0.9463 27 6 7.2086 1.6751 -0.0134 28 7 3.5238 -0.7229 -0.0062 29 7 2.3008 -1.1256 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.9561 2.1162 -0.0004 34 1 5.1103 -0.9581 0.6672 35 1 6.5586 -1.0738 -0.3654 36 1 7.1516 -1.7534 1.9135 37 1 6.4737 -0.2450 2.5727 38 1 8.8065 -0.4265 0.6120 39 1 8.9504 -0.1181 2.3591 40 1 9.7184 2.0668 3.2040 41 1 10.9073 1.1362 2.2324 42 1 11.5985 3.5764 3.1734 43 1 12.0359 3.1282 1.4962 44 1 7.6782 6.7761 0.7302 45 1 9.2329 4.0508 -0.0972 46 1 8.2672 4.0149 1.4044 47 1 7.7581 1.3276 -0.8883 48 1 6.9510 2.7273 -0.1353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961153801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:23 Heat of formation + Delta-G solvation = 73.282366 kcal Electronic energy + Delta-G solvation = -29416.237634 eV Core-core repulsion = 25508.398986 eV Total energy + Delta-G solvation = -3907.838648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.31006 -41.09569 -39.56654 -37.97263 -35.77820 -34.98377 -33.67251 -32.66393 -32.01749 -30.43080 -29.07178 -28.53475 -26.88556 -26.25889 -24.23142 -23.87512 -23.15592 -22.08562 -21.67340 -20.75839 -20.44293 -18.85133 -18.47684 -17.50515 -17.29829 -17.04645 -16.78200 -16.36172 -15.88031 -15.76863 -15.55147 -15.37916 -15.04180 -14.55683 -14.33483 -14.25663 -14.11966 -14.03504 -13.83400 -13.71696 -13.42361 -13.19549 -13.11984 -12.82450 -12.68493 -12.49660 -12.21289 -12.09698 -11.95521 -11.78816 -11.73424 -11.61668 -11.49930 -11.31377 -11.27553 -11.01502 -10.80717 -10.66171 -10.40350 -9.58382 -8.84728 -7.78717 -5.19336 0.11245 0.54600 1.14058 1.43069 1.46649 1.54757 1.93501 2.17071 2.50663 3.08637 3.34205 3.40844 3.64732 3.75128 3.82970 3.87694 3.93973 4.03390 4.16322 4.19809 4.28436 4.36202 4.37917 4.43593 4.47268 4.61425 4.64547 4.68683 4.75576 4.82867 4.84105 4.94979 4.96174 5.07461 5.09268 5.17326 5.18978 5.24991 5.38552 5.42130 5.47316 5.49403 5.56195 5.64018 5.69589 5.88904 6.25844 6.34925 6.80981 7.09116 7.11934 7.82375 8.47200 9.26868 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.003091 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.942397 B = 9056.706922 C =10758.423068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.348 5.348 3 C 0.106 3.894 4 C -0.119 4.119 5 C 0.590 3.410 6 O -0.578 6.578 7 N -0.595 5.595 8 C 0.084 3.916 9 C -0.128 4.128 10 C -0.106 4.106 11 C -0.070 4.070 12 H 0.043 0.957 13 C -0.093 4.093 14 H 0.083 0.917 15 C -0.106 4.106 16 C 0.122 3.878 17 N -0.632 5.632 18 C -0.245 4.245 19 H 0.081 0.919 20 C -0.069 4.069 21 N -0.944 5.944 22 Si 0.977 3.023 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.266 1.266 26 C 0.188 3.812 27 C 0.121 3.879 28 N -0.215 5.215 29 N -0.086 5.086 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.230 0.770 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.039 0.961 43 H 0.029 0.971 44 H 0.243 0.757 45 H -0.019 1.019 46 H 0.024 0.976 47 H 0.081 0.919 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.665 -20.219 -1.011 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.132 5.132 3 C -0.052 4.052 4 C -0.259 4.259 5 C 0.377 3.623 6 O -0.457 6.457 7 N -0.325 5.325 8 C -0.038 4.038 9 C -0.166 4.166 10 C -0.144 4.144 11 C -0.090 4.090 12 H 0.062 0.938 13 C -0.112 4.112 14 H 0.101 0.899 15 C -0.144 4.144 16 C -0.003 4.003 17 N -0.358 5.358 18 C -0.375 4.375 19 H 0.099 0.901 20 C -0.263 4.263 21 N -0.593 5.593 22 Si 0.805 3.195 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.191 1.191 26 C 0.063 3.937 27 C -0.002 4.002 28 N -0.088 5.088 29 N -0.066 5.066 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.246 0.754 34 H 0.142 0.858 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.053 0.947 45 H -0.001 1.001 46 H 0.042 0.958 47 H 0.099 0.901 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.849 -20.967 -1.114 25.717 hybrid contribution -0.113 2.799 -0.231 2.811 sum -14.962 -18.167 -1.345 23.574 Atomic orbital electron populations 1.22751 0.69145 1.07861 1.06672 1.50663 1.10692 1.04307 1.47575 1.23748 0.89232 0.96304 0.95911 1.21280 0.94634 0.90469 1.19479 1.17308 0.82762 0.85910 0.76341 1.90850 1.86666 1.15310 1.52878 1.48011 1.04606 1.11879 1.68032 1.22667 1.04418 0.78626 0.98071 1.21920 0.95452 1.02318 0.96887 1.21586 0.97603 0.91861 1.03310 1.21274 0.93978 0.97391 0.96361 0.93835 1.22285 0.95476 0.94424 0.99061 0.89904 1.22689 0.97266 0.97602 0.96815 1.21844 0.93233 0.88723 0.96495 1.44884 1.26873 1.01675 1.62364 1.19440 1.01574 0.82088 1.34357 0.90103 1.25717 0.95648 1.02539 1.02353 1.70229 1.04811 1.33591 1.50674 0.85121 0.76486 0.79798 0.78116 1.21265 1.22259 1.19107 1.20999 0.90944 0.89249 0.92486 1.21604 0.84373 0.95763 0.98428 1.74351 1.12962 1.10056 1.11424 1.81883 0.93749 1.07996 1.22990 0.87307 0.86831 0.85576 0.75373 0.85803 0.90127 0.87683 0.93207 0.90062 0.90138 0.92229 0.87714 0.94247 0.95358 0.94745 1.00070 0.95826 0.90129 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 11.51 127.77 1.47 1.70 16 2 N -0.35 -5.21 4.03 -368.57 -1.49 -6.70 16 3 C 0.11 2.03 11.32 83.85 0.95 2.98 16 4 C -0.12 -3.21 6.69 40.81 0.27 -2.94 16 5 C 0.59 20.47 7.67 86.69 0.67 21.13 16 6 O -0.58 -24.96 16.30 -4.02 -0.07 -25.03 16 7 N -0.59 -18.91 2.97 -822.67 -2.45 -21.36 16 8 C 0.08 2.01 6.08 86.36 0.52 2.53 16 9 C -0.13 -2.68 6.08 30.67 0.19 -2.50 16 10 C -0.11 -2.44 4.97 30.62 0.15 -2.29 16 11 C -0.07 -2.33 1.74 -10.72 -0.02 -2.35 16 12 H 0.04 1.71 8.06 -2.38 -0.02 1.69 16 13 C -0.09 -3.45 2.49 -9.61 -0.02 -3.48 16 14 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 15 C -0.11 -3.54 5.38 31.98 0.17 -3.37 16 16 C 0.12 5.14 7.23 86.85 0.63 5.77 16 17 N -0.63 -34.62 3.39 -691.98 -2.35 -36.97 16 18 C -0.25 -14.63 10.26 84.03 0.86 -13.77 16 19 H 0.08 4.58 7.84 -2.91 -0.02 4.56 16 20 C -0.07 -4.21 5.44 84.86 0.46 -3.75 16 21 N -0.94 -61.27 10.49 21.65 0.23 -61.04 16 22 Si 0.98 48.54 29.56 68.60 2.03 50.56 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.19 9.92 4.33 86.73 0.38 10.29 16 27 C 0.12 4.29 5.48 86.36 0.47 4.77 16 28 N -0.21 -5.41 8.81 -50.00 -0.44 -5.85 16 29 N -0.09 -1.87 13.78 37.02 0.51 -1.36 16 30 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.13 -0.23 8.14 -2.38 -0.02 -0.25 16 33 H 0.23 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.12 3.00 4.14 -32.15 -0.13 2.87 16 35 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.67 7.20 -2.38 -0.02 1.66 16 40 H 0.06 2.06 8.05 -2.38 -0.02 2.04 16 41 H 0.10 2.60 8.08 -2.39 -0.02 2.58 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.24 15.52 8.31 -92.71 -0.77 14.75 16 45 H -0.02 -1.13 8.03 -2.39 -0.02 -1.14 16 46 H 0.02 1.44 6.45 -2.39 -0.02 1.43 16 47 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.06 2.56 6.55 -2.38 -0.02 2.54 16 Total: -1.00 -85.99 377.67 3.96 -82.03 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.83 Total: 10.98 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 7.15 Total: 14.74 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -5.98 Total: -133.28 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.07 Total: -25.03 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.56 kcal Total: -85.99 3.96 -82.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961153801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.314 kcal (2) G-P(sol) polarization free energy of solvation -85.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds