Wall clock time and date at job start Tue Mar 31 2020 18:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47897 * 110.99555 * 2 1 4 4 C 1.54000 * 107.05672 * 145.84575 * 3 2 1 5 5 C 1.54598 * 105.22213 * 358.72428 * 4 3 2 6 6 C 1.48533 * 111.00245 * 117.39949 * 2 1 3 7 7 H 1.09003 * 110.66452 * 318.71648 * 6 2 1 8 8 C 1.50696 * 110.66726 * 81.84199 * 6 2 1 9 9 C 1.35363 * 126.38695 * 233.54154 * 8 6 2 10 10 C 1.41503 * 105.50194 * 180.02562 * 9 8 6 11 11 C 1.47716 * 126.51804 * 180.02562 * 10 9 8 12 12 O 1.21570 * 119.99665 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00131 * 180.02562 * 11 10 9 14 14 C 1.47029 * 125.64885 * 0.02794 * 13 11 10 15 15 C 1.54324 * 107.26917 * 181.02041 * 14 13 11 16 16 C 1.55157 * 102.94278 * 22.19469 * 15 14 13 17 17 H 1.08999 * 111.00640 * 82.61070 * 16 15 14 18 18 N 1.46498 * 111.00043 * 206.42145 * 16 15 14 19 19 C 1.36937 * 120.00207 * 204.99987 * 18 16 15 20 20 H 1.08001 * 119.99503 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00224 * 180.02562 * 19 18 16 22 22 N 1.31612 * 120.00189 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47360 * 59.99218 * 23 21 19 25 25 H 1.48499 * 109.46958 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47138 * 299.99447 * 23 21 19 27 27 C 1.47420 * 125.65042 * 179.71606 * 13 11 10 28 28 N 1.31808 * 106.96586 * 0.02562 * 10 9 8 29 29 N 1.28468 * 110.07113 * 359.71555 * 28 10 9 30 30 H 0.96997 * 124.88718 * 180.28989 * 29 28 10 31 31 H 1.09001 * 109.46958 * 59.87359 * 1 2 3 32 32 H 1.08998 * 109.46822 * 179.87272 * 1 2 3 33 33 H 1.09001 * 109.47005 * 299.86748 * 1 2 3 34 34 H 1.09000 * 109.91881 * 26.49521 * 3 2 1 35 35 H 1.08997 * 109.91908 * 265.19336 * 3 2 1 36 36 H 1.09002 * 110.31026 * 117.69182 * 4 3 2 37 37 H 1.09000 * 110.30915 * 239.76211 * 4 3 2 38 38 H 1.09003 * 110.72246 * 96.45403 * 5 4 3 39 39 H 1.09003 * 110.72391 * 219.72762 * 5 4 3 40 40 H 1.07997 * 127.24979 * 359.97438 * 9 8 6 41 41 H 1.08998 * 109.87903 * 300.43653 * 14 13 11 42 42 H 1.08999 * 109.87685 * 61.44753 * 14 13 11 43 43 H 1.09003 * 110.71615 * 140.55861 * 15 14 13 44 44 H 1.09000 * 110.71908 * 263.64688 * 15 14 13 45 45 H 0.97004 * 120.00536 * 25.00315 * 18 16 15 46 46 H 0.97004 * 120.00593 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.37305 * 274.75174 * 27 13 11 48 48 H 1.09005 * 110.36660 * 37.07027 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8266 5 6 3.4504 -0.0921 1.3175 6 6 2.0014 -0.6381 1.2311 7 1 1.4238 -0.3324 2.1035 8 6 2.0053 -2.1388 1.0933 9 6 1.4448 -3.0252 1.9491 10 6 1.7091 -4.3016 1.3984 11 6 1.3012 -5.6042 1.9630 12 8 0.6730 -5.6459 3.0030 13 7 1.6254 -6.7463 1.3253 14 6 2.3790 -6.8406 0.0663 15 6 2.4859 -8.3377 -0.2926 16 6 1.3008 -8.9673 0.4861 17 1 0.3682 -8.8598 -0.0679 18 7 1.5648 -10.3745 0.7963 19 6 0.5218 -11.2384 0.9985 20 1 -0.4955 -10.8824 0.9289 21 6 0.7719 -12.5717 1.2930 22 7 2.0116 -13.0056 1.3773 23 14 -0.6510 -13.7503 1.5682 24 1 -1.4924 -13.8045 0.3457 25 1 -0.1209 -15.1055 1.8643 26 1 -1.4708 -13.2779 2.7128 27 6 1.2889 -8.1084 1.7778 28 7 2.3884 -4.1072 0.2857 29 7 2.5646 -2.8497 0.0907 30 1 3.0340 -2.4661 -0.6666 31 1 -0.3633 0.5158 -0.8889 32 1 -0.3633 -1.0277 -0.0023 33 1 -0.3633 0.5118 0.8912 34 1 1.2758 2.0561 0.4572 35 1 2.2122 1.6967 -1.0212 36 1 4.1470 1.6456 0.2024 37 1 3.2142 2.0442 1.6757 38 1 4.1138 -0.6534 0.6594 39 1 3.8132 -0.1172 2.3451 40 1 0.9094 -2.8047 2.8608 41 1 1.8498 -6.3070 -0.7232 42 1 3.3744 -6.4164 0.1976 43 1 2.3650 -8.4865 -1.3656 44 1 3.4364 -8.7488 0.0476 45 1 2.4784 -10.6944 0.8585 46 1 2.1865 -13.9374 1.5828 47 1 2.0373 -8.4696 2.4833 48 1 0.2987 -8.1230 2.2335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968751676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:41 Heat of formation + Delta-G solvation = 66.849241 kcal Electronic energy + Delta-G solvation = -28308.174184 eV Core-core repulsion = 24400.056575 eV Total energy + Delta-G solvation = -3908.117609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83074 -39.55316 -39.20170 -37.08383 -34.08183 -32.75131 -32.28222 -31.94046 -31.24819 -29.49362 -28.34696 -27.42040 -26.08042 -24.73046 -23.27145 -22.42189 -21.84929 -21.44235 -21.14174 -20.03022 -18.66451 -17.95268 -17.29617 -16.73811 -16.52432 -16.04906 -15.51432 -15.37428 -15.04896 -14.72627 -14.39632 -14.29726 -13.86627 -13.73684 -13.69282 -13.33459 -13.07932 -12.97559 -12.68897 -12.30204 -12.22052 -12.12799 -12.02461 -11.93985 -11.68188 -11.47688 -11.22347 -11.02975 -10.89630 -10.72355 -10.64864 -10.23350 -10.00911 -9.85668 -9.69301 -9.43272 -9.20078 -9.06622 -8.95827 -8.20994 -7.02763 -5.79122 -3.09486 1.59532 1.93624 2.72512 3.27840 3.43570 3.46127 3.50096 3.51431 3.60564 4.02172 4.07469 4.36926 4.38394 4.51771 4.59154 4.67944 4.82768 4.93264 4.98215 5.02712 5.14801 5.18462 5.24021 5.33026 5.40052 5.45057 5.45833 5.48502 5.50365 5.59419 5.65408 5.69702 5.83188 5.94522 6.12340 6.20563 6.23484 6.28038 6.37004 6.40074 6.50177 6.64384 6.69885 6.87626 6.97348 7.69998 7.76006 7.89597 8.38396 8.46357 9.50398 10.04224 10.39393 11.42893 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032984 B = 0.002010 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.700768 B =13923.836403 C =14131.032208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.131 3.869 7 H 0.083 0.917 8 C 0.030 3.970 9 C -0.174 4.174 10 C -0.002 4.002 11 C 0.608 3.392 12 O -0.541 6.541 13 N -0.600 5.600 14 C 0.116 3.884 15 C -0.144 4.144 16 C 0.172 3.828 17 H 0.068 0.932 18 N -0.711 5.711 19 C -0.247 4.247 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.082 3.918 28 N -0.249 5.249 29 N -0.367 5.367 30 H 0.445 0.555 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.159 0.841 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.069 0.931 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.775 32.422 -4.546 32.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.093 4.093 4 C -0.170 4.170 5 C -0.156 4.156 6 C 0.021 3.979 7 H 0.101 0.899 8 C -0.097 4.097 9 C -0.203 4.203 10 C -0.162 4.162 11 C 0.394 3.606 12 O -0.417 6.417 13 N -0.333 5.333 14 C -0.008 4.008 15 C -0.183 4.183 16 C 0.060 3.940 17 H 0.086 0.914 18 N -0.351 5.351 19 C -0.378 4.378 20 H 0.090 0.910 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.211 1.211 27 C -0.043 4.043 28 N -0.086 5.086 29 N -0.081 5.081 30 H 0.290 0.710 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.177 0.823 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.221 0.779 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.883 31.426 -5.262 32.100 hybrid contribution -0.855 0.352 1.136 1.464 sum 3.028 31.778 -4.126 32.188 Atomic orbital electron populations 1.22541 0.86895 1.02887 1.01011 1.64631 1.09041 1.15126 1.35844 1.22888 0.95930 0.89354 1.01094 1.22427 0.97905 0.96804 0.99885 1.22581 0.95002 0.95601 1.02433 1.21267 0.96735 0.86909 0.92947 0.89919 1.20837 1.02767 0.94026 0.92046 1.21473 1.06113 0.90143 1.02602 1.21922 1.04282 0.95172 0.94854 1.16537 0.79607 0.81067 0.83362 1.90785 1.41376 1.86403 1.23146 1.48358 1.54196 1.06218 1.24503 1.21994 0.95986 0.97210 0.85571 1.22988 1.00772 0.93268 1.01236 1.21362 0.95975 0.85163 0.91518 0.91369 1.42310 1.06981 1.02158 1.83603 1.19238 0.87874 0.89828 1.40859 0.90962 1.24767 0.96413 0.97222 1.02215 1.69649 1.17516 1.15576 1.55106 0.86240 0.81428 0.80253 0.78087 1.21183 1.21680 1.21103 1.23500 1.01164 0.79101 1.00542 1.73754 1.17892 0.98431 1.18495 1.43232 1.41433 1.03089 1.20304 0.71021 0.91023 0.90863 0.94869 0.93266 0.89921 0.90547 0.91031 0.90760 0.89992 0.82303 0.91354 0.91577 0.90344 0.90637 0.77859 0.93342 0.91317 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.29 60.07 0.56 0.65 16 2 N -0.52 -3.29 5.23 -232.11 -1.21 -4.50 16 3 C 0.04 0.16 6.70 -2.75 -0.02 0.14 16 4 C -0.13 -0.51 6.92 -25.37 -0.18 -0.69 16 5 C -0.12 -0.60 6.50 -24.79 -0.16 -0.76 16 6 C 0.13 0.87 2.78 -66.86 -0.19 0.68 16 7 H 0.08 0.53 7.96 -51.93 -0.41 0.11 16 8 C 0.03 0.28 5.91 -82.21 -0.49 -0.20 16 9 C -0.17 -2.13 10.73 -39.36 -0.42 -2.56 16 10 C 0.00 -0.03 6.98 -82.76 -0.58 -0.60 16 11 C 0.61 11.05 7.86 -12.39 -0.10 10.96 16 12 O -0.54 -11.42 17.18 5.30 0.09 -11.33 16 13 N -0.60 -10.61 3.32 -171.54 -0.57 -11.18 16 14 C 0.12 1.73 5.54 -3.06 -0.02 1.72 16 15 C -0.14 -2.32 6.59 -24.90 -0.16 -2.49 16 16 C 0.17 3.46 3.73 -65.66 -0.24 3.21 16 17 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 18 N -0.71 -17.64 5.24 -51.24 -0.27 -17.90 16 19 C -0.25 -6.82 9.96 -15.06 -0.15 -6.97 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 23 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.08 1.63 6.61 -2.41 -0.02 1.62 16 28 N -0.25 -3.17 9.75 33.42 0.33 -2.84 16 29 N -0.37 -3.48 6.83 33.50 0.23 -3.25 16 30 H 0.45 3.02 8.96 -190.44 -1.71 1.32 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.57 8.01 -51.93 -0.42 0.15 16 33 H 0.03 0.19 8.00 -51.93 -0.42 -0.23 16 34 H 0.05 0.21 7.73 -51.93 -0.40 -0.19 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.39 8.05 -51.93 -0.42 -0.03 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.07 0.96 7.66 -51.93 -0.40 0.57 16 42 H 0.07 0.93 7.76 -51.93 -0.40 0.53 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.07 1.23 8.01 -51.93 -0.42 0.82 16 45 H 0.39 10.10 7.77 -40.82 -0.32 9.78 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -33.04 390.32 -11.15 -44.19 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -9.07 Total: 6.36 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.25 Total: 4.33 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -0.77 Total: -66.85 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.04 -11.15 -44.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968751676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.038 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds