Wall clock time and date at job start Tue Mar 31 2020 18:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 119.99749 * 2 1 4 4 H 1.08004 * 120.00084 * 146.64146 * 3 2 1 5 5 C 1.38813 * 120.00137 * 326.64410 * 3 2 1 6 6 N 1.31620 * 119.99915 * 154.23778 * 5 3 2 7 7 Si 1.86799 * 119.99915 * 334.23021 * 5 3 2 8 8 H 1.48496 * 109.47242 * 95.39269 * 7 5 3 9 9 H 1.48505 * 109.47155 * 215.39279 * 7 5 3 10 10 H 1.48495 * 109.47243 * 335.39036 * 7 5 3 11 11 C 1.46497 * 120.00078 * 179.97438 * 2 1 3 12 12 H 1.08993 * 110.64003 * 180.69926 * 11 2 1 13 13 C 1.55151 * 110.87418 * 303.94978 * 11 2 1 14 14 C 1.54902 * 101.58497 * 153.93507 * 13 11 2 15 15 N 1.47431 * 104.83138 * 322.98897 * 14 13 11 16 16 C 1.34779 * 125.65023 * 204.08981 * 15 14 13 17 17 O 1.21278 * 120.00078 * 180.02562 * 16 15 14 18 18 C 1.50698 * 119.99656 * 0.04243 * 16 15 14 19 19 H 1.08999 * 109.45981 * 60.03360 * 18 16 15 20 20 C 1.53107 * 109.46449 * 300.08099 * 18 16 15 21 21 C 1.53424 * 109.57640 * 169.90345 * 20 18 16 22 22 C 1.50591 * 108.33169 * 49.82821 * 21 20 18 23 23 N 1.32915 * 129.16429 * 163.38143 * 22 21 20 24 24 N 1.29021 * 108.63629 * 180.21168 * 23 22 21 25 25 N 1.29110 * 110.25914 * 359.97438 * 24 23 22 26 26 C 1.46490 * 126.00340 * 179.90914 * 25 24 23 27 27 C 1.34391 * 107.98550 * 359.93038 * 25 24 23 28 28 C 1.50534 * 129.25550 * 180.15148 * 27 25 24 29 29 C 1.47018 * 108.70122 * 24.12860 * 15 14 13 30 30 H 1.09001 * 109.46849 * 274.68953 * 1 2 3 31 31 H 1.08998 * 109.47149 * 34.68745 * 1 2 3 32 32 H 1.08998 * 109.46886 * 154.68933 * 1 2 3 33 33 H 0.97002 * 119.99812 * 179.97438 * 6 5 3 34 34 H 1.08999 * 111.00716 * 272.01217 * 13 11 2 35 35 H 1.09004 * 111.00396 * 35.85606 * 13 11 2 36 36 H 1.08999 * 110.36995 * 204.15247 * 14 13 11 37 37 H 1.09002 * 110.46032 * 81.87485 * 14 13 11 38 38 H 1.09001 * 109.45327 * 289.94857 * 20 18 16 39 39 H 1.09007 * 109.44951 * 49.87195 * 20 18 16 40 40 H 1.08995 * 109.70310 * 290.10789 * 21 20 18 41 41 H 1.09002 * 109.70818 * 169.54439 * 21 20 18 42 42 H 1.09002 * 109.47436 * 270.02535 * 26 25 24 43 43 H 1.09004 * 109.47707 * 30.02727 * 26 25 24 44 44 H 1.09002 * 109.47089 * 150.02572 * 26 25 24 45 45 H 1.09005 * 109.69357 * 43.86083 * 28 27 25 46 46 H 1.09006 * 109.72818 * 283.30044 * 28 27 25 47 47 H 1.08996 * 109.88174 * 239.51941 * 29 15 14 48 48 H 1.09004 * 110.00955 * 118.42861 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0963 1.2630 0.5143 5 6 1.6271 2.2891 -0.6610 6 7 1.9592 3.5038 -0.2783 7 14 0.4527 2.0495 -2.0937 8 1 -0.9473 2.1336 -1.6056 9 1 0.6875 3.1079 -3.1086 10 1 0.6842 0.7166 -2.7060 11 6 2.1976 -1.2687 0.0006 12 1 3.2729 -1.0914 0.0129 13 6 1.7729 -2.1517 1.2035 14 6 2.0805 -3.5731 0.6700 15 7 1.7250 -3.5245 -0.7600 16 6 1.3881 -4.5838 -1.5221 17 8 1.1137 -4.4258 -2.6928 18 6 1.3520 -5.9645 -0.9193 19 1 0.6286 -5.9861 -0.1043 20 6 2.7393 -6.3218 -0.3790 21 6 2.6513 -7.6077 0.4533 22 6 1.9147 -8.6444 -0.3532 23 7 1.8598 -9.9608 -0.1782 24 7 1.1162 -10.4689 -1.1021 25 7 0.6755 -9.5398 -1.8827 26 6 -0.1957 -9.7325 -3.0445 27 6 1.1568 -8.3648 -1.4422 28 6 0.9416 -6.9806 -1.9932 29 6 1.8000 -2.1292 -1.2172 30 1 -0.3633 0.0840 1.0243 31 1 -0.3633 0.8450 -0.5848 32 1 -0.3633 -0.9290 -0.4394 33 1 1.5943 4.2746 -0.7404 34 1 2.3736 -1.9267 2.0847 35 1 0.7103 -2.0360 1.4172 36 1 1.4700 -4.3130 1.1876 37 1 3.1389 -3.8044 0.7902 38 1 3.4251 -6.4747 -1.2123 39 1 3.1054 -5.5082 0.2473 40 1 2.1108 -7.4100 1.3789 41 1 3.6547 -7.9660 0.6832 42 1 0.4144 -9.8936 -3.9334 43 1 -0.8342 -10.6004 -2.8800 44 1 -0.8154 -8.8469 -3.1848 45 1 -0.1102 -6.8448 -2.2450 46 1 1.5536 -6.8400 -2.8843 47 1 0.8287 -1.8104 -1.5953 48 1 2.5521 -2.0332 -2.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972178380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:35 Heat of formation + Delta-G solvation = 73.954719 kcal Electronic energy + Delta-G solvation = -29355.262724 eV Core-core repulsion = 25447.453231 eV Total energy + Delta-G solvation = -3907.809493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.43921 -41.39616 -39.22249 -37.59430 -36.64217 -35.88148 -33.81685 -32.04898 -31.54211 -31.15542 -29.50982 -28.73858 -28.09569 -26.27016 -24.85995 -24.35299 -23.39078 -22.38536 -21.14275 -20.82305 -20.03690 -19.02524 -18.43531 -17.99369 -17.74908 -17.48867 -16.80652 -16.59535 -15.87671 -15.50552 -15.37145 -14.88579 -14.83344 -14.78692 -14.61735 -14.49325 -14.36291 -14.17974 -13.94536 -13.66903 -13.59923 -13.42885 -13.15842 -13.09509 -12.94209 -12.59568 -12.58470 -12.43705 -12.34353 -12.09110 -12.01793 -11.84911 -11.58585 -11.54858 -11.42329 -10.95937 -10.81677 -10.61117 -9.87657 -9.62474 -8.86126 -8.23215 -5.54648 0.52577 1.27199 1.40582 1.41441 1.47786 1.49358 1.59390 1.95469 2.39101 3.00741 3.11435 3.32198 3.34457 3.66692 3.71176 3.77194 3.81504 3.87450 3.98900 4.15328 4.22539 4.25685 4.29553 4.35582 4.42958 4.47356 4.50040 4.50152 4.56205 4.66458 4.72338 4.74868 4.88896 4.91427 4.92649 4.99885 5.01630 5.04857 5.12318 5.21099 5.27032 5.32274 5.34705 5.42681 5.60190 5.89840 6.16139 6.57933 6.92906 7.12623 7.44475 7.60495 8.01082 8.96401 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026710 B = 0.002581 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.031295 B =10847.045335 C =11555.445778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.609 5.609 3 C -0.256 4.256 4 H 0.057 0.943 5 C -0.017 4.017 6 N -0.940 5.940 7 Si 0.936 3.064 8 H -0.276 1.276 9 H -0.311 1.311 10 H -0.269 1.269 11 C 0.162 3.838 12 H 0.083 0.917 13 C -0.140 4.140 14 C 0.100 3.900 15 N -0.609 5.609 16 C 0.530 3.470 17 O -0.589 6.589 18 C -0.086 4.086 19 H 0.126 0.874 20 C -0.112 4.112 21 C -0.025 4.025 22 C -0.030 4.030 23 N -0.298 5.298 24 N -0.129 5.129 25 N -0.278 5.278 26 C 0.066 3.934 27 C -0.015 4.015 28 C -0.018 4.018 29 C 0.092 3.908 30 H 0.033 0.967 31 H 0.018 0.982 32 H 0.058 0.942 33 H 0.263 0.737 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.044 0.956 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 -26.055 0.159 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.331 5.331 3 C -0.386 4.386 4 H 0.075 0.925 5 C -0.214 4.214 6 N -0.584 5.584 7 Si 0.767 3.233 8 H -0.203 1.203 9 H -0.240 1.240 10 H -0.194 1.194 11 C 0.055 3.945 12 H 0.101 0.899 13 C -0.180 4.180 14 C -0.021 4.021 15 N -0.341 5.341 16 C 0.320 3.680 17 O -0.470 6.470 18 C -0.107 4.107 19 H 0.144 0.856 20 C -0.150 4.150 21 C -0.064 4.064 22 C -0.171 4.171 23 N -0.161 5.161 24 N -0.106 5.106 25 N -0.071 5.071 26 C -0.073 4.073 27 C -0.151 4.151 28 C -0.058 4.058 29 C -0.033 4.033 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.062 0.938 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.303 -27.455 -0.251 27.654 hybrid contribution -0.705 1.649 -1.603 2.406 sum -4.008 -25.806 -1.854 26.181 Atomic orbital electron populations 1.21315 0.83832 0.98974 0.99238 1.44160 1.01276 1.01667 1.86046 1.18750 1.05830 0.87191 1.26820 0.92513 1.25903 1.00570 0.94962 1.00013 1.70004 1.48666 0.98381 1.41361 0.86022 0.79190 0.76874 0.81261 1.20345 1.24033 1.19431 1.21665 0.96431 0.84096 0.92334 0.89890 1.23212 1.02648 0.93611 0.98482 1.22751 1.02613 0.98092 0.78666 1.48541 1.66842 1.06113 1.12647 1.20699 0.75621 0.86298 0.85377 1.90691 1.51373 1.86455 1.18434 1.21235 1.01697 0.88586 0.99203 0.85586 1.21800 0.93971 0.98426 1.00835 1.20047 1.00487 0.88950 0.96898 1.22282 1.03421 0.92563 0.98876 1.74748 1.14863 1.09158 1.17326 1.78508 1.14047 1.16323 1.01759 1.47189 1.33032 1.04572 1.22264 1.22723 0.93912 1.07158 0.83553 1.21960 1.02784 0.90754 0.99561 1.19860 1.03767 0.84357 0.97793 1.22479 1.00225 0.81643 0.98966 0.94896 0.96341 0.92360 0.92794 0.88488 0.91035 0.87084 0.88175 0.91470 0.87299 0.87584 0.88491 0.87445 0.86662 0.86265 0.88697 0.89346 0.93802 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.42 8.31 127.77 1.06 5.48 16 2 N -0.61 -26.33 2.56 -696.15 -1.78 -28.11 16 3 C -0.26 -13.68 9.87 84.03 0.83 -12.85 16 4 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 5 C -0.02 -0.98 5.29 84.86 0.45 -0.53 16 6 N -0.94 -57.06 13.97 21.65 0.30 -56.76 16 7 Si 0.94 45.93 25.10 68.60 1.72 47.66 16 8 H -0.28 -12.92 6.63 99.48 0.66 -12.26 16 9 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 10 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 11 C 0.16 5.38 3.43 46.18 0.16 5.54 16 12 H 0.08 2.82 7.94 -2.39 -0.02 2.80 16 13 C -0.14 -3.19 6.64 31.98 0.21 -2.97 16 14 C 0.10 1.56 5.15 86.85 0.45 2.00 16 15 N -0.61 -14.43 3.32 -811.80 -2.70 -17.13 16 16 C 0.53 12.61 7.21 87.66 0.63 13.24 16 17 O -0.59 -19.30 16.15 -3.02 -0.05 -19.35 16 18 C -0.09 -1.26 1.85 -11.36 -0.02 -1.28 16 19 H 0.13 1.38 7.82 -2.39 -0.02 1.36 16 20 C -0.11 -1.30 5.05 30.77 0.16 -1.14 16 21 C -0.02 -0.30 6.30 29.96 0.19 -0.11 16 22 C -0.03 -0.58 7.11 41.75 0.30 -0.29 16 23 N -0.30 -7.55 12.40 -48.99 -0.61 -8.16 16 24 N -0.13 -3.11 13.19 37.02 0.49 -2.62 16 25 N -0.28 -4.90 3.73 -356.43 -1.33 -6.23 16 26 C 0.07 0.49 11.27 127.77 1.44 1.93 16 27 C -0.02 -0.27 6.76 41.50 0.28 0.01 16 28 C -0.02 -0.28 4.71 29.94 0.14 -0.14 16 29 C 0.09 3.01 6.39 86.73 0.55 3.56 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.02 0.83 2.80 -2.39 -0.01 0.82 16 32 H 0.06 2.03 6.44 -2.39 -0.02 2.02 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.72 7.20 -2.38 -0.02 1.70 16 36 H 0.11 1.01 7.44 -2.39 -0.02 0.99 16 37 H 0.10 1.11 6.91 -2.39 -0.02 1.10 16 38 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 39 H 0.11 0.91 4.82 -2.38 -0.01 0.90 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 42 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.12 0.44 7.71 -2.39 -0.02 0.42 16 45 H 0.09 1.31 7.87 -2.38 -0.02 1.29 16 46 H 0.09 1.57 7.78 -2.38 -0.02 1.55 16 47 H 0.04 1.65 6.28 -2.39 -0.02 1.64 16 48 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -78.51 369.12 3.81 -74.70 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 0.93 Total: 3.55 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.83 Total: 12.44 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -5.62 Total: -119.00 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.72 Total: 47.66 kcal Total: -78.51 3.81 -74.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972178380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.657 kcal (2) G-P(sol) polarization free energy of solvation -78.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds