Wall clock time and date at job start Tue Mar 31 2020 18:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47279 * 2 1 4 4 N 1.28519 * 124.44468 * 89.97497 * 3 2 1 5 5 C 1.31133 * 109.06099 * 180.02562 * 4 3 2 6 6 C 1.40924 * 105.77705 * 0.02562 * 5 4 3 7 7 C 1.47799 * 127.23886 * 179.97438 * 6 5 4 8 8 O 1.21557 * 119.99867 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00109 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00044 * 179.97438 * 9 7 6 11 11 H 1.08996 * 108.96871 * 33.92067 * 10 9 7 12 12 C 1.52525 * 109.04189 * 274.99559 * 10 9 7 13 13 C 1.53817 * 111.70096 * 185.38963 * 12 10 9 14 14 C 1.51626 * 107.02221 * 57.54435 * 13 12 10 15 15 H 1.08997 * 110.50424 * 55.19860 * 14 13 12 16 16 C 1.53059 * 116.67684 * 183.74058 * 14 13 12 17 17 N 1.48660 * 103.44270 * 155.88509 * 16 14 13 18 18 C 1.36941 * 125.78119 * 155.62542 * 17 16 14 19 19 H 1.08003 * 119.99664 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99881 * 359.97438 * 18 17 16 21 21 N 1.31620 * 120.00114 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99853 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47128 * 59.99373 * 22 20 18 24 24 H 1.48495 * 109.47120 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46689 * 300.00031 * 22 20 18 26 26 C 1.48895 * 108.52288 * 335.22832 * 17 16 14 27 27 C 1.52328 * 105.53885 * 357.42989 * 26 17 16 28 28 H 1.09004 * 109.87734 * 271.58291 * 27 26 17 29 29 C 1.51439 * 117.45352 * 145.05752 * 27 26 17 30 30 N 1.28596 * 124.44694 * 270.31059 * 3 2 1 31 31 H 1.09002 * 109.46841 * 60.00218 * 1 2 3 32 32 H 1.09000 * 109.46925 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46969 * 300.00171 * 1 2 3 34 34 H 1.09005 * 109.47435 * 239.99606 * 2 1 3 35 35 H 1.09006 * 109.47423 * 120.00218 * 2 1 3 36 36 H 1.08003 * 127.11265 * 180.02562 * 5 4 3 37 37 H 0.97005 * 120.00063 * 359.97438 * 9 7 6 38 38 H 1.09003 * 109.03179 * 64.82598 * 12 10 9 39 39 H 1.08997 * 109.04120 * 305.96500 * 12 10 9 40 40 H 1.08997 * 109.94324 * 176.91863 * 13 12 10 41 41 H 1.08998 * 109.94516 * 298.16537 * 13 12 10 42 42 H 1.08998 * 110.63008 * 274.37883 * 16 14 13 43 43 H 1.09002 * 110.62692 * 37.39655 * 16 14 13 44 44 H 0.97001 * 119.99435 * 180.02562 * 21 20 18 45 45 H 1.09001 * 110.55437 * 238.31562 * 26 17 16 46 46 H 1.08999 * 110.10436 * 116.30390 * 26 17 16 47 47 H 1.08996 * 109.94185 * 61.33813 * 29 27 26 48 48 H 1.09006 * 109.93921 * 300.09941 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2602 2.0666 1.0599 5 6 2.6813 3.2588 0.7120 6 6 2.6842 3.2680 -0.6972 7 6 3.0775 4.3835 -1.5835 8 8 3.4491 5.4376 -1.1055 9 7 3.0233 4.2323 -2.9216 10 6 3.4126 5.3382 -3.8001 11 1 4.2202 5.8979 -3.3284 12 6 2.2154 6.2624 -3.9971 13 6 2.5167 7.3740 -5.0167 14 6 2.9156 6.6926 -6.3112 15 1 2.1415 5.9943 -6.6294 16 6 3.3513 7.6037 -7.4614 17 7 4.2087 6.7211 -8.2956 18 6 4.4594 6.8796 -9.6325 19 1 5.1001 6.1798 -10.1484 20 6 3.8901 7.9398 -10.3244 21 7 3.1097 8.7929 -9.6955 22 14 4.2315 8.1556 -12.1483 23 1 3.7642 6.9540 -12.8850 24 1 3.5108 9.3537 -12.6484 25 1 5.6908 8.3304 -12.3613 26 6 4.7574 5.6402 -7.4310 27 6 4.2493 5.9430 -6.0272 28 1 4.9465 6.6068 -5.5159 29 6 3.9133 4.7648 -5.1371 30 7 2.2554 2.0689 -1.0605 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.9669 4.0666 1.3695 37 1 2.7265 3.3913 -3.3031 38 1 1.9567 6.7177 -3.0411 39 1 1.3677 5.6757 -4.3509 40 1 1.6271 7.9833 -5.1761 41 1 3.3355 7.9968 -4.6567 42 1 2.4861 7.9464 -8.0288 43 1 3.9245 8.4507 -7.0843 44 1 2.7116 9.5335 -10.1792 45 1 5.8472 5.6533 -7.4473 46 1 4.3875 4.6703 -7.7635 47 1 4.8037 4.1584 -4.9712 48 1 3.1318 4.1612 -5.5986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979653964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:18 Heat of formation + Delta-G solvation = 70.624197 kcal Electronic energy + Delta-G solvation = -28505.091402 eV Core-core repulsion = 24597.137487 eV Total energy + Delta-G solvation = -3907.953915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.71375 -41.29018 -40.04299 -37.11596 -35.80608 -35.09921 -33.87227 -33.37529 -32.06040 -31.39653 -30.30238 -27.86824 -26.97185 -25.91032 -24.75519 -23.53444 -22.59513 -22.13769 -21.61095 -21.32305 -20.69973 -18.97069 -18.73573 -18.14898 -17.66511 -17.02086 -16.85065 -16.12098 -15.94313 -15.85901 -15.60622 -15.51146 -15.11239 -14.95553 -14.84471 -14.09139 -13.75593 -13.59037 -13.50847 -13.43926 -13.18389 -13.07825 -12.95966 -12.90910 -12.72208 -12.62764 -12.35495 -12.12897 -12.07143 -11.94268 -11.73710 -11.69661 -11.54582 -11.52723 -11.33258 -11.05466 -10.80611 -10.68696 -10.52785 -10.06668 -8.85755 -7.73730 -5.17411 0.20205 0.87810 1.19275 1.46912 1.50422 1.56723 2.00367 2.15646 2.51530 2.86801 3.35621 3.58583 3.63443 3.68393 3.73957 3.92635 3.94391 3.97399 4.08242 4.12471 4.26578 4.37220 4.46202 4.48791 4.57454 4.58445 4.69226 4.70766 4.74301 4.75843 4.80449 4.96889 4.97911 5.03117 5.08200 5.14357 5.16868 5.22521 5.28878 5.39119 5.45928 5.49212 5.55939 5.58384 5.77427 5.86715 6.32019 6.41111 7.01744 7.10956 7.11980 7.78818 8.46024 9.28369 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026546 B = 0.002089 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.508350 B =13398.231625 C =13831.202402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.132 5.132 4 N -0.298 5.298 5 C 0.028 3.972 6 C -0.065 4.065 7 C 0.611 3.389 8 O -0.559 6.559 9 N -0.698 5.698 10 C 0.156 3.844 11 H 0.077 0.923 12 C -0.115 4.115 13 C -0.092 4.092 14 C -0.102 4.102 15 H 0.070 0.930 16 C 0.168 3.832 17 N -0.634 5.634 18 C -0.236 4.236 19 H 0.080 0.920 20 C -0.072 4.072 21 N -0.950 5.950 22 Si 0.980 3.020 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.280 1.280 26 C 0.138 3.862 27 C -0.090 4.090 28 H 0.066 0.934 29 C -0.093 4.093 30 N -0.249 5.249 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.221 0.779 37 H 0.416 0.584 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.068 0.932 43 H -0.015 1.015 44 H 0.246 0.754 45 H 0.026 0.974 46 H 0.034 0.966 47 H 0.085 0.915 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.082 -19.918 22.188 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.001 3.999 3 N -0.037 5.037 4 N -0.138 5.138 5 C -0.155 4.155 6 C -0.227 4.227 7 C 0.395 3.605 8 O -0.436 6.436 9 N -0.348 5.348 10 C 0.052 3.948 11 H 0.095 0.905 12 C -0.154 4.154 13 C -0.131 4.131 14 C -0.121 4.121 15 H 0.088 0.912 16 C 0.043 3.957 17 N -0.361 5.361 18 C -0.365 4.365 19 H 0.098 0.902 20 C -0.264 4.264 21 N -0.600 5.600 22 Si 0.808 3.192 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.206 1.206 26 C 0.014 3.986 27 C -0.110 4.110 28 H 0.084 0.916 29 C -0.132 4.132 30 N -0.099 5.099 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.238 0.762 37 H 0.253 0.747 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.002 0.998 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.052 0.948 47 H 0.103 0.897 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.301 -20.345 22.351 30.685 hybrid contribution 0.431 1.253 -1.296 1.853 sum -4.870 -19.092 21.055 28.836 Atomic orbital electron populations 1.22177 0.92151 1.05554 1.02576 1.22648 0.96804 0.72182 1.08226 1.48836 1.42072 1.14309 0.98494 1.74021 1.18099 1.05644 1.16067 1.25158 1.00973 0.95735 0.93644 1.22931 1.10785 0.93860 0.95115 1.16772 0.76992 0.84777 0.81988 1.90811 1.48790 1.28043 1.75925 1.45843 1.66461 1.17835 1.04647 1.20982 0.97034 0.87111 0.89653 0.90489 1.21797 0.98055 0.96611 0.98891 1.21191 1.01457 0.97195 0.93253 1.22172 0.96708 0.98334 0.94934 0.91163 1.21375 0.94412 0.90137 0.89756 1.45660 1.55600 1.29637 1.05194 1.19444 1.23863 1.08608 0.84604 0.90220 1.25639 1.00550 0.97632 1.02589 1.70079 1.37200 1.17211 1.35525 0.85128 0.77445 0.76924 0.79691 1.20179 1.22057 1.20609 1.21256 0.95849 0.91453 0.90011 1.21591 0.97123 0.97909 0.94350 0.91564 1.21435 1.02216 0.96762 0.92746 1.74311 1.14808 1.04249 1.16508 0.92561 0.86598 0.92468 0.85081 0.84990 0.76248 0.74738 0.91970 0.91031 0.91454 0.92212 0.91369 0.99750 0.94478 0.95583 0.94779 0.89674 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.24 71.98 0.74 -0.08 16 2 C 0.12 0.70 7.24 86.38 0.63 1.32 16 3 N -0.13 -2.04 3.94 -187.49 -0.74 -2.78 16 4 N -0.30 -5.45 12.01 -56.16 -0.67 -6.12 16 5 C 0.03 0.54 12.04 85.46 1.03 1.56 16 6 C -0.07 -1.40 7.21 42.24 0.30 -1.10 16 7 C 0.61 14.96 7.78 86.77 0.68 15.63 16 8 O -0.56 -17.15 16.58 -3.90 -0.06 -17.21 16 9 N -0.70 -14.70 5.03 -444.85 -2.24 -16.94 16 10 C 0.16 3.76 2.44 45.12 0.11 3.87 16 11 H 0.08 2.11 7.51 -2.39 -0.02 2.09 16 12 C -0.11 -2.94 5.37 30.71 0.16 -2.77 16 13 C -0.09 -2.84 5.71 30.42 0.17 -2.67 16 14 C -0.10 -3.76 2.51 -10.32 -0.03 -3.78 16 15 H 0.07 2.59 8.01 -2.39 -0.02 2.57 16 16 C 0.17 8.41 5.53 85.98 0.48 8.89 16 17 N -0.63 -33.35 3.46 -691.34 -2.40 -35.75 16 18 C -0.24 -13.50 10.30 84.03 0.87 -12.63 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 20 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 21 N -0.95 -57.82 10.11 21.65 0.22 -57.60 16 22 Si 0.98 46.43 29.55 68.60 2.03 48.45 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 C 0.14 5.66 7.04 85.69 0.60 6.27 16 27 C -0.09 -2.99 2.28 -10.63 -0.02 -3.01 16 28 H 0.07 2.26 7.92 -2.39 -0.02 2.24 16 29 C -0.09 -2.24 5.16 30.37 0.16 -2.08 16 30 N -0.25 -4.64 11.84 -48.17 -0.57 -5.21 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.13 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.13 0.27 8.14 -2.38 -0.02 0.25 16 36 H 0.22 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.42 7.11 8.38 -92.70 -0.78 6.34 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 1.89 7.98 -2.39 -0.02 1.87 16 42 H 0.07 3.91 5.93 -2.39 -0.01 3.90 16 43 H -0.02 -0.85 8.14 -2.39 -0.02 -0.86 16 44 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 47 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.08 1.84 8.03 -2.38 -0.02 1.82 16 Total: -1.00 -74.63 385.79 2.09 -72.54 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.19 Total: 14.89 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 6.34 Total: 5.73 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -6.40 Total: -124.40 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.06 Total: -17.21 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -74.63 2.09 -72.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979653964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.163 kcal (2) G-P(sol) polarization free energy of solvation -74.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds