Wall clock time and date at job start Tue Mar 31 2020 17:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47270 * 2 1 4 4 C 1.35311 * 125.87117 * 124.99899 * 3 2 1 5 5 C 1.35349 * 106.17316 * 179.97438 * 4 3 2 6 6 C 1.50707 * 126.74948 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46851 * 124.99559 * 6 5 4 8 8 O 1.21274 * 120.00312 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99606 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99951 * 180.02562 * 9 7 6 11 11 C 1.53580 * 112.24268 * 59.64541 * 10 9 7 12 12 C 1.54223 * 106.67463 * 121.17349 * 11 10 9 13 13 C 1.55571 * 103.95366 * 25.32507 * 12 11 10 14 14 C 1.54777 * 102.83557 * 321.56811 * 13 12 11 15 15 H 1.08996 * 112.61634 * 275.32550 * 14 13 12 16 16 N 1.46974 * 108.68838 * 150.85689 * 14 13 12 17 17 C 1.36944 * 125.57849 * 65.87857 * 16 14 13 18 18 H 1.08008 * 119.99580 * 343.23128 * 17 16 14 19 19 C 1.38807 * 120.00261 * 163.23283 * 17 16 14 20 20 N 1.31616 * 119.99889 * 332.26280 * 19 17 16 21 21 Si 1.86794 * 120.00108 * 152.53554 * 19 17 16 22 22 H 1.48497 * 109.47222 * 179.72574 * 21 19 17 23 23 H 1.48502 * 109.47065 * 299.72646 * 21 19 17 24 24 H 1.48500 * 109.47291 * 59.72544 * 21 19 17 25 25 C 1.47362 * 108.84540 * 246.13575 * 16 14 13 26 26 C 1.54614 * 104.95040 * 24.32586 * 25 16 14 27 27 N 1.33769 * 106.49951 * 0.25650 * 5 4 3 28 28 N 1.28633 * 108.88335 * 359.56988 * 27 5 4 29 29 H 1.08997 * 109.47327 * 299.99787 * 1 2 3 30 30 H 1.08998 * 109.47132 * 60.00235 * 1 2 3 31 31 H 1.09004 * 109.46818 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47473 * 239.99829 * 2 1 3 33 33 H 1.09003 * 109.47483 * 119.99449 * 2 1 3 34 34 H 1.07993 * 126.91625 * 0.02562 * 4 3 2 35 35 H 1.09000 * 109.46757 * 4.99820 * 6 5 4 36 36 H 1.08991 * 109.47084 * 244.99456 * 6 5 4 37 37 H 0.97000 * 120.00290 * 359.97438 * 9 7 6 38 38 H 1.08998 * 110.01417 * 240.48124 * 11 10 9 39 39 H 1.09005 * 110.02073 * 1.82376 * 11 10 9 40 40 H 1.09005 * 110.49028 * 143.60545 * 12 11 10 41 41 H 1.09000 * 110.49413 * 266.13977 * 12 11 10 42 42 H 1.09004 * 110.28363 * 203.52408 * 13 12 11 43 43 H 1.09002 * 111.41273 * 80.14009 * 13 12 11 44 44 H 0.97002 * 119.99976 * 354.26304 * 20 19 17 45 45 H 1.09000 * 110.37416 * 143.26571 * 25 16 14 46 46 H 1.09000 * 110.37034 * 265.59656 * 25 16 14 47 47 H 1.09001 * 111.08353 * 205.03203 * 26 25 16 48 48 H 1.08997 * 110.75069 * 81.33802 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8756 1.9191 0.8982 5 6 3.0541 3.2076 0.5241 6 6 3.9238 4.2322 1.2060 7 6 4.8953 4.8098 0.2092 8 8 4.8831 4.4268 -0.9415 9 7 5.7785 5.7512 0.5967 10 6 6.7226 6.3131 -0.3725 11 6 6.0102 6.9922 -1.5516 12 6 6.4798 8.4611 -1.5657 13 6 7.8695 8.4175 -0.8678 14 6 7.6554 7.3793 0.2600 15 1 7.2208 7.8191 1.1576 16 7 8.9377 6.7184 0.5414 17 6 10.0474 7.3239 1.0680 18 1 10.1288 8.4009 1.0623 19 6 11.0675 6.5535 1.6090 20 7 10.7989 5.3704 2.1191 21 14 12.8202 7.1993 1.6200 22 1 13.7132 6.1966 2.2543 23 1 13.2655 7.4465 0.2251 24 1 12.8755 8.4682 2.3895 25 6 8.8359 5.2991 0.1583 26 6 7.7172 5.2530 -0.9080 27 7 2.3028 3.3941 -0.5668 28 7 1.7061 2.2915 -0.8548 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.3271 1.4205 1.7430 35 1 4.4752 3.7581 2.0180 36 1 3.2988 5.0295 1.6081 37 1 5.7885 6.0573 1.5170 38 1 6.2861 6.5032 -2.4858 39 1 4.9302 6.9463 -1.4115 40 1 6.5829 8.8189 -2.5901 41 1 5.7831 9.0898 -1.0111 42 1 8.1135 9.3943 -0.4502 43 1 8.6489 8.0854 -1.5536 44 1 9.8790 5.0715 2.1929 45 1 9.7784 4.9517 -0.2647 46 1 8.5595 4.6923 1.0206 47 1 7.2533 4.2675 -0.9472 48 1 8.1039 5.5397 -1.8859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991993742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:21 Heat of formation + Delta-G solvation = 85.405412 kcal Electronic energy + Delta-G solvation = -29385.972201 eV Core-core repulsion = 25478.659247 eV Total energy + Delta-G solvation = -3907.312953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.32988 -40.17263 -38.16110 -35.73158 -34.46390 -33.38241 -32.70641 -31.49111 -31.07038 -29.83750 -28.24261 -26.50340 -25.88971 -24.93629 -23.76063 -22.24327 -21.70321 -20.72129 -20.10394 -19.44473 -18.80942 -17.58619 -17.44811 -16.87776 -16.36824 -15.87994 -15.35216 -14.96140 -14.78577 -14.63563 -14.18316 -13.74811 -13.63994 -13.55246 -13.35317 -13.10785 -12.99275 -12.77583 -12.51965 -12.33076 -12.05524 -11.77852 -11.66553 -11.56801 -11.45689 -10.89907 -10.79850 -10.64753 -10.52267 -10.38500 -10.25120 -10.12529 -10.07224 -9.96929 -9.88150 -9.51780 -9.47058 -9.14031 -8.57566 -8.37551 -6.92083 -6.07167 -3.12026 1.49119 2.15651 2.48735 2.96046 3.48856 3.51322 3.55548 3.72524 4.01825 4.25347 4.36129 4.59255 4.60596 4.65645 4.77353 4.89680 5.05359 5.11301 5.13963 5.17997 5.25898 5.27711 5.39266 5.40485 5.55749 5.62614 5.74976 5.77739 5.81818 5.89576 6.02102 6.07818 6.12238 6.22732 6.29517 6.37561 6.43163 6.45551 6.55167 6.64923 6.74492 6.93124 7.01137 7.14417 7.16726 7.83401 7.86561 8.49361 8.51270 8.58280 9.04626 9.84286 10.39961 11.25320 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.002735 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.947645 B =10234.202801 C =11261.450462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.295 5.295 4 C -0.047 4.047 5 C -0.001 4.001 6 C -0.056 4.056 7 C 0.515 3.485 8 O -0.520 6.520 9 N -0.710 5.710 10 C 0.165 3.835 11 C -0.110 4.110 12 C -0.125 4.125 13 C -0.126 4.126 14 C 0.161 3.839 15 H 0.048 0.952 16 N -0.595 5.595 17 C -0.331 4.331 18 H 0.064 0.936 19 C -0.026 4.026 20 N -0.918 5.918 21 Si 1.062 2.938 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.147 3.853 26 C -0.133 4.133 27 N -0.238 5.238 28 N -0.088 5.088 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.189 0.811 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.399 0.601 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.268 0.732 45 H 0.049 0.951 46 H 0.023 0.977 47 H 0.069 0.931 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.878 -8.050 -0.167 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.089 5.089 4 C -0.198 4.198 5 C -0.140 4.140 6 C -0.098 4.098 7 C 0.299 3.701 8 O -0.395 6.395 9 N -0.361 5.361 10 C 0.078 3.922 11 C -0.149 4.149 12 C -0.163 4.163 13 C -0.166 4.166 14 C 0.053 3.947 15 H 0.066 0.934 16 N -0.321 5.321 17 C -0.459 4.459 18 H 0.082 0.918 19 C -0.227 4.227 20 N -0.559 5.559 21 Si 0.892 3.108 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.221 1.221 25 C 0.021 3.979 26 C -0.172 4.172 27 N -0.105 5.105 28 N -0.068 5.068 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.206 0.794 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.040 0.960 47 H 0.088 0.912 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.049 -8.398 -1.838 19.992 hybrid contribution -0.911 0.084 1.187 1.498 sum -18.959 -8.315 -0.651 20.712 Atomic orbital electron populations 1.22075 0.92740 1.03613 1.04051 1.22068 0.96855 0.76703 1.05235 1.47400 1.30878 1.11983 1.18659 1.23307 1.00794 0.95471 1.00256 1.21209 1.02133 0.93954 0.96692 1.19908 0.95522 0.97071 0.97318 1.20193 0.81138 0.79510 0.89213 1.90731 1.70057 1.59456 1.19222 1.45892 1.35369 1.41349 1.13455 1.21575 0.87930 0.93895 0.88783 1.22228 0.99768 0.95107 0.97750 1.22510 0.97506 0.96105 1.00199 1.23014 0.95717 0.99494 0.98378 1.21823 0.86792 0.91266 0.94809 0.93406 1.44560 1.08318 1.05571 1.73615 1.19698 0.95954 0.92489 1.37780 0.91785 1.25690 1.03908 0.96956 0.96170 1.70781 1.22803 1.22318 1.40016 0.83558 0.76202 0.74945 0.76072 1.21202 1.22166 1.22080 1.21480 0.95914 0.86867 0.93616 1.23078 0.96299 0.98526 0.99284 1.75110 1.07648 1.15603 1.12113 1.78278 1.21067 0.92829 1.14587 0.91767 0.90624 0.89954 0.88342 0.87723 0.79365 0.87236 0.87367 0.76663 0.91329 0.91916 0.92276 0.92186 0.92374 0.90783 0.92030 0.93259 0.95954 0.91224 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.04 37.15 0.37 -0.43 16 2 C 0.11 0.62 7.17 -4.04 -0.03 0.59 16 3 N -0.30 -3.09 3.44 -61.26 -0.21 -3.30 16 4 C -0.05 -0.48 11.49 -17.05 -0.20 -0.68 16 5 C 0.00 -0.02 6.00 -82.78 -0.50 -0.51 16 6 C -0.06 -0.63 6.28 -29.03 -0.18 -0.82 16 7 C 0.51 7.98 6.97 -10.98 -0.08 7.91 16 8 O -0.52 -10.09 13.48 5.56 0.07 -10.01 16 9 N -0.71 -10.97 5.23 -45.35 -0.24 -11.21 16 10 C 0.16 2.95 0.74 -129.37 -0.10 2.86 16 11 C -0.11 -1.85 5.24 -25.79 -0.14 -1.98 16 12 C -0.12 -1.93 6.87 -24.72 -0.17 -2.10 16 13 C -0.13 -2.31 6.26 -24.43 -0.15 -2.46 16 14 C 0.16 3.23 3.65 -65.60 -0.24 2.99 16 15 H 0.05 0.97 7.98 -51.93 -0.41 0.55 16 16 N -0.60 -14.56 2.93 -161.29 -0.47 -15.03 16 17 C -0.33 -9.09 9.76 -15.06 -0.15 -9.23 16 18 H 0.06 1.75 7.97 -52.48 -0.42 1.34 16 19 C -0.03 -0.72 5.08 -17.43 -0.09 -0.81 16 20 N -0.92 -27.38 12.93 55.49 0.72 -26.66 16 21 Si 1.06 25.25 30.00 -169.99 -5.10 20.15 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.15 3.46 5.27 -2.72 -0.01 3.44 16 26 C -0.13 -2.66 5.76 -24.87 -0.14 -2.81 16 27 N -0.24 -3.88 11.84 33.29 0.39 -3.48 16 28 N -0.09 -1.28 12.91 60.35 0.78 -0.50 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.27 8.07 -51.93 -0.42 -0.15 16 34 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.11 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.40 5.39 8.49 -40.82 -0.35 5.04 16 38 H 0.07 1.20 7.41 -51.93 -0.38 0.82 16 39 H 0.06 1.07 7.40 -51.93 -0.38 0.68 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 44 H 0.27 7.98 6.03 -40.82 -0.25 7.73 16 45 H 0.05 1.29 7.92 -51.93 -0.41 0.88 16 46 H 0.02 0.56 6.82 -51.93 -0.35 0.21 16 47 H 0.07 1.42 6.82 -51.93 -0.35 1.07 16 48 H 0.07 1.41 7.65 -51.93 -0.40 1.01 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -36.59 382.59 -7.65 -44.24 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.57 Total: 4.08 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.79 Total: -4.04 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.97 Total: -60.18 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.10 Total: 20.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.59 -7.65 -44.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991993742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.649 kcal (2) G-P(sol) polarization free energy of solvation -36.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds