Wall clock time and date at job start Tue Mar 31 2020 18:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46748 * 2 1 4 4 N 1.28524 * 124.44860 * 90.02395 * 3 2 1 5 5 C 1.31135 * 109.06253 * 179.72895 * 4 3 2 6 6 C 1.40924 * 105.77145 * 0.02562 * 5 4 3 7 7 C 1.47804 * 127.23129 * 179.97438 * 6 5 4 8 8 O 1.21553 * 120.00249 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99867 * 179.97438 * 7 6 5 10 10 C 1.48237 * 125.78565 * 0.02562 * 9 7 6 11 11 C 1.52324 * 105.86860 * 176.82090 * 10 9 7 12 12 H 1.09001 * 109.88643 * 271.82934 * 11 10 9 13 13 C 1.51444 * 117.44767 * 145.30407 * 11 10 9 14 14 C 1.53843 * 107.04256 * 181.23831 * 13 11 10 15 15 C 1.52524 * 111.66759 * 57.19419 * 14 13 11 16 16 C 1.53821 * 111.70157 * 305.96324 * 15 14 13 17 17 H 1.08997 * 109.94560 * 298.15403 * 16 15 14 18 18 N 1.46504 * 109.94250 * 176.99210 * 16 15 14 19 19 C 1.36936 * 119.99768 * 85.00204 * 18 16 15 20 20 H 1.08002 * 119.99617 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00069 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99809 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99953 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46912 * 90.00310 * 23 21 19 25 25 H 1.48505 * 109.46857 * 209.99933 * 23 21 19 26 26 H 1.48490 * 109.47313 * 329.99832 * 23 21 19 27 27 C 1.51625 * 107.01990 * 57.53089 * 16 15 14 28 28 H 1.08996 * 110.50086 * 55.19331 * 27 16 15 29 29 C 1.48657 * 125.78229 * 179.71239 * 9 7 6 30 30 N 1.28594 * 124.44505 * 269.71730 * 3 2 1 31 31 H 1.09002 * 109.46934 * 60.00329 * 1 2 3 32 32 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47558 * 299.99983 * 1 2 3 34 34 H 1.08996 * 109.47439 * 239.99483 * 2 1 3 35 35 H 1.09002 * 109.46503 * 119.99028 * 2 1 3 36 36 H 1.07991 * 127.10999 * 179.97438 * 5 4 3 37 37 H 1.08996 * 110.17679 * 295.92444 * 10 9 7 38 38 H 1.09004 * 110.17277 * 57.65123 * 10 9 7 39 39 H 1.08999 * 109.93934 * 300.62056 * 13 11 10 40 40 H 1.09002 * 109.94492 * 61.85213 * 13 11 10 41 41 H 1.09002 * 109.04484 * 177.76130 * 14 13 11 42 42 H 1.08998 * 109.03942 * 296.70332 * 14 13 11 43 43 H 1.08998 * 109.03271 * 66.52798 * 15 14 13 44 44 H 1.08993 * 109.03804 * 185.46666 * 15 14 13 45 45 H 0.96997 * 120.00192 * 264.99798 * 18 16 15 46 46 H 0.96997 * 119.99503 * 180.02562 * 22 21 19 47 47 H 1.08994 * 110.62938 * 274.10564 * 29 9 7 48 48 H 1.09001 * 110.63135 * 37.13174 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2610 2.0665 1.0599 5 6 2.6877 3.2567 0.7119 6 6 2.6933 3.2647 -0.6973 7 6 3.0930 4.3779 -1.5836 8 8 3.4680 5.4308 -1.1057 9 7 3.0417 4.2256 -2.9218 10 6 2.6063 3.0036 -3.6390 11 6 2.6486 3.3532 -5.1210 12 1 1.6966 3.7871 -5.4269 13 6 3.0480 2.2563 -6.0859 14 6 3.0420 2.8718 -7.4958 15 6 3.9717 4.0774 -7.5880 16 6 3.6537 5.1249 -6.5074 17 1 2.6399 5.5020 -6.6421 18 7 4.6122 6.2301 -6.5854 19 6 4.3958 7.2638 -7.4570 20 1 3.5187 7.2641 -8.0873 21 6 5.3037 8.3113 -7.5306 22 7 6.3723 8.3111 -6.7621 23 14 5.0088 9.7210 -8.7201 24 1 4.2185 10.7815 -8.0447 25 1 6.3131 10.2793 -9.1590 26 1 4.2607 9.2231 -9.9022 27 6 3.7724 4.4286 -5.1658 28 1 4.7534 3.9650 -5.0618 29 6 3.4060 5.2569 -3.9286 30 7 2.2656 2.0652 -1.0605 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 2.9746 4.0639 1.3694 37 1 3.2885 2.1803 -3.4275 38 1 1.5918 2.7358 -3.3438 39 1 4.0467 1.8932 -5.8431 40 1 2.3310 1.4369 -6.0348 41 1 3.3645 2.1182 -8.2143 42 1 2.0279 3.1864 -7.7421 43 1 5.0016 3.7421 -7.4658 44 1 3.8617 4.5369 -8.5702 45 1 5.4000 6.2296 -6.0196 46 1 7.0065 9.0432 -6.8133 47 1 2.5566 5.9075 -4.1365 48 1 4.2629 5.8390 -3.5893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992676483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:03 Heat of formation + Delta-G solvation = 86.517074 kcal Electronic energy + Delta-G solvation = -29261.539459 eV Core-core repulsion = 25354.274711 eV Total energy + Delta-G solvation = -3907.264748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.83653 -40.28030 -38.47916 -35.53079 -35.19014 -33.96080 -32.90554 -31.50202 -30.95119 -30.20433 -28.88911 -26.74363 -25.77700 -24.65484 -23.64761 -22.90452 -21.72609 -20.91397 -20.26656 -19.71987 -19.54504 -17.70213 -17.25590 -16.85258 -16.75782 -15.83905 -15.43940 -15.10526 -14.87056 -14.58917 -14.23744 -14.21921 -14.05918 -13.67412 -13.25463 -13.02002 -12.92907 -12.72634 -12.42348 -12.39865 -12.22957 -11.97318 -11.89971 -11.86824 -11.45115 -11.08144 -10.97291 -10.87190 -10.74220 -10.63312 -10.48128 -10.23040 -10.17354 -10.14093 -10.04912 -9.73894 -9.64463 -9.44036 -8.86108 -8.50978 -6.93523 -5.73439 -3.02567 1.19106 1.79109 1.87091 2.95264 3.28478 3.45926 3.50892 3.52611 3.69893 4.28093 4.31343 4.46853 4.59509 4.60760 4.68362 4.82895 4.87464 4.98552 5.06200 5.16784 5.30345 5.43218 5.45159 5.51601 5.52635 5.58466 5.59903 5.64139 5.77196 5.80638 5.89355 5.92546 5.94897 6.09035 6.14558 6.18829 6.25885 6.31010 6.35486 6.46426 6.57296 6.63088 6.65991 6.88303 7.11226 7.55566 7.72791 7.90825 8.19119 8.44576 9.56035 10.12794 10.47432 11.48958 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002852 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.400318 B = 9813.772598 C =11082.225784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.146 5.146 4 N -0.293 5.293 5 C 0.033 3.967 6 C -0.037 4.037 7 C 0.617 3.383 8 O -0.527 6.527 9 N -0.607 5.607 10 C 0.123 3.877 11 C -0.109 4.109 12 H 0.082 0.918 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.138 4.138 16 C 0.196 3.804 17 H 0.050 0.950 18 N -0.722 5.722 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.102 4.102 28 H 0.082 0.918 29 C 0.126 3.874 30 N -0.246 5.246 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.207 0.793 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.075 0.925 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 -21.156 11.354 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.049 5.049 4 N -0.132 5.132 5 C -0.150 4.150 6 C -0.200 4.200 7 C 0.402 3.598 8 O -0.402 6.402 9 N -0.341 5.341 10 C 0.000 4.000 11 C -0.129 4.129 12 H 0.100 0.900 13 C -0.136 4.136 14 C -0.152 4.152 15 C -0.179 4.179 16 C 0.085 3.915 17 H 0.068 0.932 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.122 4.122 28 H 0.100 0.900 29 C 0.005 3.995 30 N -0.094 5.094 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.224 0.776 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.094 0.906 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.045 -21.708 11.562 27.386 hybrid contribution 0.469 1.557 -0.492 1.699 sum -11.576 -20.151 11.070 25.741 Atomic orbital electron populations 1.22190 0.92903 1.04024 1.03847 1.22074 0.96206 0.74226 1.06069 1.48297 1.43784 1.13487 0.99317 1.73987 1.17894 1.05620 1.15718 1.24843 1.01267 0.95194 0.93716 1.23095 1.08679 0.93544 0.94713 1.16228 0.78379 0.84962 0.80262 1.90845 1.47964 1.26894 1.74500 1.49018 1.64416 1.16303 1.04318 1.21725 1.00042 0.86921 0.91290 1.21914 1.00019 0.97872 0.93055 0.89962 1.21274 1.01144 0.96464 0.94756 1.21549 1.00340 0.97804 0.95549 1.22315 0.98744 0.95305 1.01539 1.19969 0.94303 0.87691 0.89510 0.93161 1.42406 1.25771 1.20576 1.47486 1.19200 1.05430 0.98122 1.14242 0.91231 1.24732 0.97254 0.98900 0.99928 1.69660 1.13032 1.33254 1.41944 0.86233 0.76806 0.82783 0.80612 1.21732 1.21862 1.20848 1.22421 0.98430 0.96035 0.95304 0.89967 1.22088 1.01403 0.89846 0.86170 1.74489 1.14908 1.04610 1.15348 0.91242 0.89442 0.91353 0.87092 0.87173 0.77585 0.91238 0.91077 0.91748 0.92176 0.92741 0.92568 0.92745 0.92014 0.78174 0.93510 0.90634 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.24 37.16 0.38 -0.35 16 2 C 0.13 0.70 7.24 -4.04 -0.03 0.67 16 3 N -0.15 -1.46 3.94 -10.62 -0.04 -1.50 16 4 N -0.29 -3.32 12.01 30.90 0.37 -2.95 16 5 C 0.03 0.41 12.04 -16.83 -0.20 0.20 16 6 C -0.04 -0.51 7.04 -82.68 -0.58 -1.09 16 7 C 0.62 10.07 7.87 -12.35 -0.10 9.97 16 8 O -0.53 -10.24 17.24 5.32 0.09 -10.14 16 9 N -0.61 -9.29 3.38 -171.84 -0.58 -9.87 16 10 C 0.12 1.51 5.27 -3.43 -0.02 1.49 16 11 C -0.11 -1.36 2.29 -90.36 -0.21 -1.57 16 12 H 0.08 1.03 7.95 -51.93 -0.41 0.62 16 13 C -0.10 -1.09 5.70 -27.08 -0.15 -1.25 16 14 C -0.11 -1.44 5.83 -26.54 -0.15 -1.59 16 15 C -0.14 -2.31 5.45 -26.55 -0.14 -2.45 16 16 C 0.20 3.65 2.51 -68.20 -0.17 3.48 16 17 H 0.05 0.96 7.95 -51.93 -0.41 0.55 16 18 N -0.72 -17.42 5.10 -53.69 -0.27 -17.70 16 19 C -0.24 -6.47 9.95 -15.06 -0.15 -6.62 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 23 Si 0.90 22.39 29.55 -169.99 -5.02 17.36 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C -0.10 -1.62 2.02 -89.75 -0.18 -1.80 16 28 H 0.08 1.36 8.01 -51.93 -0.42 0.94 16 29 C 0.13 2.14 6.50 -2.68 -0.02 2.13 16 30 N -0.25 -2.91 9.78 33.42 0.33 -2.59 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.21 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 38 H 0.07 0.82 7.61 -51.93 -0.39 0.42 16 39 H 0.06 0.73 8.03 -51.93 -0.42 0.31 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.38 10.02 7.79 -40.82 -0.32 9.71 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 48 H 0.09 1.71 8.07 -51.93 -0.42 1.29 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -33.21 387.88 -8.20 -41.41 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.82 Total: 6.70 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.82 Total: 0.78 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.53 Total: -61.95 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.21 -8.20 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992676483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.928 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds