Wall clock time and date at job start Tue Mar 31 2020 18:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46748 * 2 1 4 4 N 1.28524 * 124.44860 * 90.02395 * 3 2 1 5 5 C 1.31135 * 109.06253 * 179.72895 * 4 3 2 6 6 C 1.40924 * 105.77145 * 0.02562 * 5 4 3 7 7 C 1.47804 * 127.23129 * 179.97438 * 6 5 4 8 8 O 1.21553 * 120.00249 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99867 * 179.97438 * 7 6 5 10 10 C 1.48237 * 125.78565 * 0.02562 * 9 7 6 11 11 C 1.52324 * 105.86860 * 176.82090 * 10 9 7 12 12 H 1.09001 * 109.88643 * 271.82934 * 11 10 9 13 13 C 1.51444 * 117.44767 * 145.30407 * 11 10 9 14 14 C 1.53843 * 107.04256 * 181.23831 * 13 11 10 15 15 C 1.52524 * 111.66759 * 57.19419 * 14 13 11 16 16 C 1.53821 * 111.70157 * 305.96324 * 15 14 13 17 17 H 1.08997 * 109.94560 * 298.15403 * 16 15 14 18 18 N 1.46504 * 109.94250 * 176.99210 * 16 15 14 19 19 C 1.36936 * 119.99768 * 85.00204 * 18 16 15 20 20 H 1.08002 * 119.99617 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00069 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99809 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99953 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46912 * 90.00310 * 23 21 19 25 25 H 1.48505 * 109.46857 * 209.99933 * 23 21 19 26 26 H 1.48490 * 109.47313 * 329.99832 * 23 21 19 27 27 C 1.51625 * 107.01990 * 57.53089 * 16 15 14 28 28 H 1.08996 * 110.50086 * 55.19331 * 27 16 15 29 29 C 1.48657 * 125.78229 * 179.71239 * 9 7 6 30 30 N 1.28594 * 124.44505 * 269.71730 * 3 2 1 31 31 H 1.09002 * 109.46934 * 60.00329 * 1 2 3 32 32 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47558 * 299.99983 * 1 2 3 34 34 H 1.08996 * 109.47439 * 239.99483 * 2 1 3 35 35 H 1.09002 * 109.46503 * 119.99028 * 2 1 3 36 36 H 1.07991 * 127.10999 * 179.97438 * 5 4 3 37 37 H 1.08996 * 110.17679 * 295.92444 * 10 9 7 38 38 H 1.09004 * 110.17277 * 57.65123 * 10 9 7 39 39 H 1.08999 * 109.93934 * 300.62056 * 13 11 10 40 40 H 1.09002 * 109.94492 * 61.85213 * 13 11 10 41 41 H 1.09002 * 109.04484 * 177.76130 * 14 13 11 42 42 H 1.08998 * 109.03942 * 296.70332 * 14 13 11 43 43 H 1.08998 * 109.03271 * 66.52798 * 15 14 13 44 44 H 1.08993 * 109.03804 * 185.46666 * 15 14 13 45 45 H 0.96997 * 120.00192 * 264.99798 * 18 16 15 46 46 H 0.96997 * 119.99503 * 180.02562 * 22 21 19 47 47 H 1.08994 * 110.62938 * 274.10564 * 29 9 7 48 48 H 1.09001 * 110.63135 * 37.13174 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2610 2.0665 1.0599 5 6 2.6877 3.2567 0.7119 6 6 2.6933 3.2647 -0.6973 7 6 3.0930 4.3779 -1.5836 8 8 3.4680 5.4308 -1.1057 9 7 3.0417 4.2256 -2.9218 10 6 2.6063 3.0036 -3.6390 11 6 2.6486 3.3532 -5.1210 12 1 1.6966 3.7871 -5.4269 13 6 3.0480 2.2563 -6.0859 14 6 3.0420 2.8718 -7.4958 15 6 3.9717 4.0774 -7.5880 16 6 3.6537 5.1249 -6.5074 17 1 2.6399 5.5020 -6.6421 18 7 4.6122 6.2301 -6.5854 19 6 4.3958 7.2638 -7.4570 20 1 3.5187 7.2641 -8.0873 21 6 5.3037 8.3113 -7.5306 22 7 6.3723 8.3111 -6.7621 23 14 5.0088 9.7210 -8.7201 24 1 4.2185 10.7815 -8.0447 25 1 6.3131 10.2793 -9.1590 26 1 4.2607 9.2231 -9.9022 27 6 3.7724 4.4286 -5.1658 28 1 4.7534 3.9650 -5.0618 29 6 3.4060 5.2569 -3.9286 30 7 2.2656 2.0652 -1.0605 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 2.9746 4.0639 1.3694 37 1 3.2885 2.1803 -3.4275 38 1 1.5918 2.7358 -3.3438 39 1 4.0467 1.8932 -5.8431 40 1 2.3310 1.4369 -6.0348 41 1 3.3645 2.1182 -8.2143 42 1 2.0279 3.1864 -7.7421 43 1 5.0016 3.7421 -7.4658 44 1 3.8617 4.5369 -8.5702 45 1 5.4000 6.2296 -6.0196 46 1 7.0065 9.0432 -6.8133 47 1 2.5566 5.9075 -4.1365 48 1 4.2629 5.8390 -3.5893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992676483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:02 Heat of formation + Delta-G solvation = 64.139473 kcal Electronic energy + Delta-G solvation = -29262.509825 eV Core-core repulsion = 25354.274711 eV Total energy + Delta-G solvation = -3908.235114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.72148 -41.53294 -39.78441 -36.98009 -35.80391 -35.58876 -33.84535 -33.26113 -31.94183 -31.15729 -30.48081 -28.08419 -26.84173 -25.73809 -25.10363 -24.12284 -22.48063 -22.13739 -21.51326 -21.02586 -20.70042 -19.15489 -18.51269 -18.01688 -17.70773 -17.17022 -16.63768 -16.48996 -15.93623 -15.70002 -15.56247 -15.40484 -15.10372 -15.01044 -14.74495 -14.27129 -13.88795 -13.68326 -13.60194 -13.45759 -13.27156 -13.09082 -12.96217 -12.83182 -12.82232 -12.59896 -12.31181 -12.18096 -12.04920 -11.96552 -11.86998 -11.73682 -11.51602 -11.44960 -11.37935 -11.23152 -10.87679 -10.80736 -10.53343 -9.77160 -8.96289 -7.90881 -5.18715 0.18584 0.85008 1.17183 1.47213 1.49005 1.56789 1.79045 2.09446 2.57770 2.78960 3.27762 3.42031 3.59030 3.68455 3.80488 3.92480 3.95197 4.03277 4.11660 4.21761 4.26247 4.28099 4.43821 4.50546 4.54551 4.57419 4.60924 4.69634 4.69899 4.72437 4.77740 4.80579 4.85021 4.91885 4.94076 5.09718 5.14161 5.19601 5.29834 5.35142 5.40446 5.43657 5.52241 5.55210 5.57831 5.72303 6.31003 6.34311 6.85324 7.07875 7.36969 8.13987 8.35986 9.32711 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002852 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.400318 B = 9813.772598 C =11082.225784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 N -0.130 5.130 4 N -0.295 5.295 5 C 0.028 3.972 6 C -0.063 4.063 7 C 0.613 3.387 8 O -0.572 6.572 9 N -0.607 5.607 10 C 0.128 3.872 11 C -0.093 4.093 12 H 0.088 0.912 13 C -0.091 4.091 14 C -0.107 4.107 15 C -0.129 4.129 16 C 0.191 3.809 17 H 0.047 0.953 18 N -0.736 5.736 19 C -0.231 4.231 20 H 0.076 0.924 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.968 3.032 24 H -0.291 1.291 25 H -0.299 1.299 26 H -0.267 1.267 27 C -0.097 4.097 28 H 0.075 0.925 29 C 0.129 3.871 30 N -0.237 5.237 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.218 0.782 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.040 0.960 45 H 0.370 0.630 46 H 0.248 0.752 47 H 0.066 0.934 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.054 -24.790 11.019 30.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.036 5.036 4 N -0.135 5.135 5 C -0.155 4.155 6 C -0.224 4.224 7 C 0.400 3.600 8 O -0.450 6.450 9 N -0.340 5.340 10 C 0.007 3.993 11 C -0.113 4.113 12 H 0.107 0.893 13 C -0.129 4.129 14 C -0.145 4.145 15 C -0.169 4.169 16 C 0.083 3.917 17 H 0.065 0.935 18 N -0.375 5.375 19 C -0.363 4.363 20 H 0.094 0.906 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.797 3.203 24 H -0.218 1.218 25 H -0.225 1.225 26 H -0.192 1.192 27 C -0.117 4.117 28 H 0.093 0.907 29 C 0.007 3.993 30 N -0.087 5.087 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.234 0.766 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.202 0.798 46 H 0.057 0.943 47 H 0.084 0.916 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.409 -25.409 11.200 31.284 hybrid contribution 1.096 2.535 -0.336 2.782 sum -13.313 -22.875 10.864 28.610 Atomic orbital electron populations 1.22174 0.91968 1.05601 1.02614 1.22684 0.96935 0.71978 1.08299 1.48928 1.41657 1.14441 0.98541 1.74011 1.18028 1.05353 1.16099 1.25073 1.01141 0.95907 0.93374 1.22656 1.11178 0.93723 0.94796 1.16601 0.77617 0.85193 0.80609 1.90808 1.49988 1.28858 1.75340 1.49067 1.64047 1.16797 1.04044 1.21866 1.01191 0.85721 0.90530 1.21919 0.98510 0.97079 0.93748 0.89319 1.21275 1.02358 0.96555 0.92700 1.21491 0.99564 0.96155 0.97320 1.22137 0.99351 0.96332 0.99128 1.20205 0.92647 0.86968 0.91922 0.93477 1.42634 1.26291 1.21785 1.46776 1.19590 1.04823 0.98360 1.13517 0.90561 1.25514 0.97567 1.01737 1.02222 1.69827 1.14242 1.33960 1.44204 0.85217 0.76287 0.79728 0.79035 1.21805 1.22550 1.19220 1.22223 0.99693 0.96727 0.93054 0.90706 1.21849 0.99588 0.90403 0.87437 1.74410 1.14457 1.03903 1.15938 0.92371 0.86455 0.92618 0.84838 0.85084 0.76582 0.90055 0.89318 0.91596 0.88479 0.90776 0.91496 0.94016 0.94109 0.79813 0.94286 0.91572 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 71.98 0.74 -0.14 16 2 C 0.12 0.80 7.24 86.38 0.63 1.43 16 3 N -0.13 -2.28 3.94 -187.50 -0.74 -3.02 16 4 N -0.29 -6.18 12.01 -56.17 -0.67 -6.85 16 5 C 0.03 0.66 12.04 85.46 1.03 1.68 16 6 C -0.06 -1.69 7.04 42.24 0.30 -1.39 16 7 C 0.61 20.53 7.87 86.77 0.68 21.21 16 8 O -0.57 -23.50 17.24 -3.88 -0.07 -23.57 16 9 N -0.61 -18.69 3.38 -815.85 -2.76 -21.45 16 10 C 0.13 2.85 5.27 85.82 0.45 3.30 16 11 C -0.09 -2.08 2.29 -10.63 -0.02 -2.11 16 12 H 0.09 1.94 7.95 -2.39 -0.02 1.92 16 13 C -0.09 -1.64 5.70 30.37 0.17 -1.47 16 14 C -0.11 -2.34 5.83 30.72 0.18 -2.16 16 15 C -0.13 -4.20 5.45 30.71 0.17 -4.03 16 16 C 0.19 7.17 2.51 44.82 0.11 7.29 16 17 H 0.05 1.80 7.95 -2.39 -0.02 1.78 16 18 N -0.74 -36.81 5.10 -323.77 -1.65 -38.47 16 19 C -0.23 -12.78 9.95 84.03 0.84 -11.94 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 22 N -0.97 -60.93 13.06 21.65 0.28 -60.64 16 23 Si 0.97 47.03 29.55 68.60 2.03 49.05 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 C -0.10 -3.09 2.02 -10.23 -0.02 -3.11 16 28 H 0.07 2.51 8.01 -2.39 -0.02 2.49 16 29 C 0.13 4.62 6.50 86.07 0.56 5.18 16 30 N -0.24 -5.11 9.78 -48.17 -0.47 -5.58 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.22 4.37 8.06 -2.92 -0.02 4.35 16 37 H 0.08 1.67 7.87 -2.39 -0.02 1.65 16 38 H 0.09 1.73 7.61 -2.38 -0.02 1.72 16 39 H 0.07 1.23 8.03 -2.39 -0.02 1.21 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.37 20.39 7.79 -92.71 -0.72 19.66 16 46 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.05 2.17 8.07 -2.39 -0.02 2.15 16 Total: -1.00 -75.96 387.88 2.46 -73.51 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.24 Total: 27.38 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 6.27 Total: 9.64 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -6.01 Total: -136.01 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.07 Total: -23.57 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -75.96 2.46 -73.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992676483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.645 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds