Wall clock time and date at job start Tue Mar 31 2020 17:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47156 * 2 1 4 4 C 1.34823 * 126.59803 * 125.00111 * 3 2 1 5 5 C 1.36594 * 106.84267 * 179.97438 * 4 3 2 6 6 C 1.47517 * 125.77216 * 179.97438 * 5 4 3 7 7 O 1.21598 * 119.99809 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00084 * 180.02562 * 6 5 4 9 9 C 1.48899 * 125.69317 * 0.46022 * 8 6 5 10 10 C 1.52322 * 105.53727 * 177.03760 * 9 8 6 11 11 H 1.09005 * 109.88788 * 271.58361 * 10 9 8 12 12 C 1.51442 * 117.45338 * 145.05491 * 10 9 8 13 13 C 1.53848 * 107.11354 * 180.67750 * 12 10 9 14 14 C 1.52706 * 111.55980 * 57.15887 * 13 12 10 15 15 C 1.53821 * 111.74762 * 306.00789 * 14 13 12 16 16 H 1.09007 * 110.01424 * 298.12423 * 15 14 13 17 17 N 1.46498 * 109.94223 * 176.91954 * 15 14 13 18 18 C 1.36932 * 120.00433 * 87.42178 * 17 15 14 19 19 H 1.08009 * 119.99850 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00211 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99912 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00059 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47265 * 89.99844 * 22 20 18 24 24 H 1.48495 * 109.47090 * 209.99974 * 22 20 18 25 25 H 1.48498 * 109.47029 * 329.99929 * 22 20 18 26 26 C 1.51616 * 107.02223 * 57.53847 * 15 14 13 27 27 H 1.08999 * 111.26183 * 55.63802 * 26 15 14 28 28 C 1.48661 * 125.78422 * 180.02562 * 8 6 5 29 29 N 1.34400 * 108.45481 * 0.24208 * 5 4 3 30 30 N 1.28760 * 109.53098 * 359.58752 * 29 5 4 31 31 H 1.08997 * 109.47062 * 60.00140 * 1 2 3 32 32 H 1.09003 * 109.47133 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47001 * 299.99873 * 1 2 3 34 34 H 1.09000 * 109.47697 * 239.99950 * 2 1 3 35 35 H 1.09004 * 109.47689 * 119.99910 * 2 1 3 36 36 H 1.08001 * 126.57713 * 0.02562 * 4 3 2 37 37 H 1.08998 * 110.54824 * 57.92658 * 9 8 6 38 38 H 1.08995 * 110.10964 * 295.91783 * 9 8 6 39 39 H 1.09002 * 109.93894 * 300.10401 * 12 10 9 40 40 H 1.09004 * 109.93818 * 61.25042 * 12 10 9 41 41 H 1.08999 * 109.03766 * 177.80261 * 13 12 10 42 42 H 1.09003 * 109.04396 * 296.67791 * 13 12 10 43 43 H 1.08997 * 109.01276 * 185.42603 * 14 13 12 44 44 H 1.08993 * 108.95443 * 66.55298 * 14 13 12 45 45 H 0.97002 * 119.99598 * 267.42188 * 17 15 14 46 46 H 0.96999 * 120.00416 * 180.02562 * 21 20 18 47 47 H 1.09004 * 110.62686 * 37.12927 * 28 8 6 48 48 H 1.09001 * 110.76338 * 274.18016 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8716 1.9320 0.8866 5 6 3.0509 3.2322 0.5081 6 6 3.9075 4.2192 1.1923 7 8 4.5305 3.8983 2.1860 8 7 3.9990 5.4769 0.7164 9 6 3.2869 6.0074 -0.4788 10 6 3.6595 7.4824 -0.5543 11 1 2.9583 8.0727 0.0357 12 6 3.8154 8.0935 -1.9312 13 6 4.2055 9.5681 -1.7305 14 6 5.4786 9.7035 -0.8982 15 6 5.3667 8.9544 0.4406 16 1 4.5589 9.3771 1.0383 17 7 6.6318 9.0484 1.1732 18 6 6.8667 10.1144 2.0000 19 1 6.1193 10.8861 2.1118 20 6 8.0653 10.2032 2.6945 21 7 8.2912 11.2281 3.4889 22 14 9.3582 8.8690 2.5007 23 1 10.2678 9.2201 1.3806 24 1 10.1417 8.7527 3.7568 25 1 8.6929 7.5735 2.2106 26 6 5.0645 7.5049 0.1143 27 1 5.8160 7.0854 -0.5545 28 6 4.8198 6.5699 1.3009 29 7 2.3102 3.4617 -0.5896 30 7 1.6886 2.3844 -0.9225 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.3267 1.4396 1.7332 37 1 2.2087 5.8975 -0.3618 38 1 3.6230 5.4883 -1.3763 39 1 4.5990 7.5733 -2.4821 40 1 2.8732 8.0290 -2.4754 41 1 4.3644 10.0297 -2.7051 42 1 3.3918 10.0852 -1.2219 43 1 5.6629 10.7594 -0.7003 44 1 6.3166 9.2966 -1.4641 45 1 7.3032 8.3556 1.0725 46 1 9.1289 11.2904 3.9739 47 1 5.7630 6.1794 1.6830 48 1 4.2716 7.0856 2.0893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992868934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:36 Heat of formation + Delta-G solvation = 77.039424 kcal Electronic energy + Delta-G solvation = -29092.114253 eV Core-core repulsion = 25184.438523 eV Total energy + Delta-G solvation = -3907.675730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.44633 -40.24138 -38.46464 -35.84305 -35.50515 -34.03474 -31.68122 -31.61190 -31.16217 -30.00178 -29.24837 -26.87362 -25.27705 -24.94737 -23.33824 -22.52144 -22.04206 -20.91568 -20.18458 -19.84468 -19.60598 -17.87545 -17.49289 -16.48829 -16.38733 -15.99232 -15.45617 -14.89757 -14.84275 -14.68668 -14.36838 -14.16682 -14.11193 -13.65679 -13.37825 -13.08011 -12.91961 -12.69854 -12.57439 -12.46128 -12.41709 -12.24511 -12.07435 -11.88549 -11.56510 -11.25167 -11.19752 -10.95005 -10.77801 -10.69437 -10.50987 -10.28977 -10.19687 -10.04473 -9.91715 -9.70466 -9.52589 -9.49480 -8.87020 -8.51771 -7.23032 -5.72846 -3.08242 0.87446 1.57316 1.69563 2.93880 3.26776 3.42682 3.46672 3.50611 3.84877 3.97503 4.24007 4.33077 4.49311 4.55175 4.63941 4.70127 4.80627 4.88797 4.93850 4.97353 5.18056 5.30705 5.37422 5.40317 5.48473 5.52144 5.58001 5.62353 5.67879 5.72851 5.85301 5.89710 5.95849 6.01847 6.04077 6.09649 6.16346 6.19051 6.31019 6.43660 6.50309 6.55621 6.61214 6.85059 7.03907 7.53251 7.69535 8.03030 8.16635 8.46262 9.24602 9.97433 10.16953 11.45462 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.002911 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.627750 B = 9616.751595 C =10951.363174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.363 5.363 4 C 0.091 3.909 5 C -0.093 4.093 6 C 0.613 3.387 7 O -0.542 6.542 8 N -0.608 5.608 9 C 0.124 3.876 10 C -0.108 4.108 11 H 0.083 0.917 12 C -0.100 4.100 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.202 3.798 16 H 0.061 0.939 17 N -0.747 5.747 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.934 5.934 22 Si 0.881 3.119 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.275 1.275 26 C -0.108 4.108 27 H 0.080 0.920 28 C 0.124 3.876 29 N -0.200 5.200 30 N -0.068 5.068 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.204 0.796 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.082 0.918 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.651 -22.189 -11.030 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.148 5.148 4 C -0.066 4.066 5 C -0.232 4.232 6 C 0.399 3.601 7 O -0.419 6.419 8 N -0.340 5.340 9 C 0.001 3.999 10 C -0.128 4.128 11 H 0.102 0.898 12 C -0.137 4.137 13 C -0.153 4.153 14 C -0.178 4.178 15 C 0.092 3.908 16 H 0.079 0.921 17 N -0.388 5.388 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.582 5.582 22 Si 0.712 3.288 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.201 1.201 26 C -0.128 4.128 27 H 0.098 0.902 28 C 0.003 3.997 29 N -0.074 5.074 30 N -0.048 5.048 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.221 0.779 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.100 0.900 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.155 -21.920 -11.555 30.138 hybrid contribution 1.581 -1.319 0.777 2.201 sum -15.574 -23.239 -10.777 29.980 Atomic orbital electron populations 1.22086 0.92706 1.03688 1.04088 1.22032 0.96894 0.76242 1.05120 1.50606 1.31815 1.12357 1.20055 1.23381 0.93123 0.94105 0.95982 1.21459 1.07575 0.94938 0.99261 1.16363 0.80557 0.80212 0.82983 1.90830 1.46694 1.78672 1.25718 1.49126 1.46053 1.09462 1.29380 1.21886 0.96872 0.93474 0.87629 1.21919 0.97724 0.94726 0.98402 0.89825 1.21283 1.01085 0.96301 0.95071 1.21579 0.98715 0.95250 0.99725 1.22300 0.96118 1.02133 0.97276 1.19934 0.89619 0.89934 0.91361 0.92059 1.42779 1.16184 1.26764 1.53108 1.19057 1.01529 0.99368 1.17118 0.89176 1.24655 0.97754 0.97503 0.99152 1.69698 1.25518 1.30465 1.32525 0.86588 0.82559 0.82498 0.77161 1.21230 1.21824 1.20148 1.22434 0.96680 0.97180 0.96501 0.90164 1.22018 0.95466 0.86205 0.96040 1.74743 1.04685 1.17789 1.10194 1.81961 1.20698 0.90303 1.11884 0.90678 0.89884 0.91673 0.88346 0.87690 0.77923 0.90557 0.90920 0.91790 0.91926 0.92576 0.92349 0.91553 0.92892 0.80610 0.93124 0.89991 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.12 37.15 0.38 -0.19 16 2 C 0.12 0.42 7.26 -4.05 -0.03 0.39 16 3 N -0.36 -2.99 3.69 -61.06 -0.23 -3.22 16 4 C 0.09 0.86 11.27 -16.83 -0.19 0.67 16 5 C -0.09 -1.20 6.85 -83.55 -0.57 -1.77 16 6 C 0.61 9.62 7.86 -12.48 -0.10 9.52 16 7 O -0.54 -9.97 17.16 5.28 0.09 -9.88 16 8 N -0.61 -9.20 3.40 -171.56 -0.58 -9.78 16 9 C 0.12 1.57 5.26 -3.06 -0.02 1.55 16 10 C -0.11 -1.37 2.28 -90.36 -0.21 -1.57 16 11 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 12 C -0.10 -1.13 5.70 -27.08 -0.15 -1.28 16 13 C -0.11 -1.45 5.85 -26.44 -0.15 -1.60 16 14 C -0.14 -2.26 5.47 -26.45 -0.14 -2.40 16 15 C 0.20 3.68 2.52 -68.20 -0.17 3.51 16 16 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 17 N -0.75 -17.18 4.88 -53.69 -0.26 -17.44 16 18 C -0.24 -6.67 10.44 -15.06 -0.16 -6.82 16 19 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 20 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 21 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 22 Si 0.88 22.42 27.74 -169.99 -4.71 17.71 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 25 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 26 C -0.11 -1.67 2.00 -89.91 -0.18 -1.85 16 27 H 0.08 1.26 8.03 -51.93 -0.42 0.85 16 28 C 0.12 2.06 6.49 -2.83 -0.02 2.04 16 29 N -0.20 -2.58 9.83 32.84 0.32 -2.26 16 30 N -0.07 -0.78 13.65 60.35 0.82 0.05 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 0.11 8.08 -51.93 -0.42 -0.31 16 36 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.08 0.94 7.58 -51.93 -0.39 0.54 16 38 H 0.07 0.91 7.80 -51.93 -0.40 0.50 16 39 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.36 8.34 5.67 -40.82 -0.23 8.11 16 46 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 47 H 0.08 1.52 8.07 -51.93 -0.42 1.11 16 48 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -34.85 384.88 -7.55 -42.41 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.77 Total: 5.01 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.81 Total: 0.23 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.85 Total: -61.27 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.85 -7.55 -42.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992868934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.446 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds