Wall clock time and date at job start Tue Mar 31 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.29108 * 126.00418 * 2 1 4 4 N 1.29020 * 110.26013 * 179.97438 * 3 2 1 5 5 C 1.32919 * 108.63240 * 359.96733 * 4 3 2 6 6 C 1.34392 * 126.00845 * 179.97438 * 2 1 3 7 7 C 1.50532 * 129.25385 * 0.25325 * 6 2 1 8 8 C 1.53443 * 108.31993 * 163.42612 * 7 6 2 9 9 H 1.08998 * 109.46965 * 289.70889 * 8 7 6 10 10 C 1.50708 * 109.45324 * 169.75731 * 8 7 6 11 11 O 1.21273 * 119.99991 * 334.86719 * 10 8 7 12 12 N 1.34779 * 120.00042 * 154.87687 * 10 8 7 13 13 C 1.46924 * 120.63243 * 184.71662 * 12 10 8 14 14 C 1.53625 * 108.54235 * 126.36433 * 13 12 10 15 15 C 1.53040 * 109.23893 * 54.85992 * 14 13 12 16 16 N 1.46498 * 109.45941 * 178.48740 * 15 14 13 17 17 C 1.36935 * 120.00192 * 275.06972 * 16 15 14 18 18 H 1.08005 * 120.00005 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00390 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99903 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00364 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46861 * 60.00156 * 21 19 17 23 23 H 1.48498 * 109.46979 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46878 * 300.00067 * 21 19 17 25 25 C 1.53037 * 109.53997 * 298.50613 * 15 14 13 26 26 C 1.46933 * 120.62801 * 4.99551 * 12 10 8 27 27 C 1.53102 * 109.54529 * 49.73591 * 8 7 6 28 28 C 1.50599 * 129.16283 * 180.10288 * 5 4 3 29 29 H 1.09002 * 109.46571 * 89.97957 * 1 2 3 30 30 H 1.09000 * 109.46815 * 209.97882 * 1 2 3 31 31 H 1.09002 * 109.46842 * 329.98216 * 1 2 3 32 32 H 1.09006 * 109.69662 * 283.15941 * 7 6 2 33 33 H 1.08996 * 109.69567 * 43.70606 * 7 6 2 34 34 H 1.08994 * 109.58478 * 246.20137 * 13 12 10 35 35 H 1.08998 * 109.58075 * 6.62434 * 13 12 10 36 36 H 1.08991 * 109.63490 * 294.86963 * 14 13 12 37 37 H 1.08997 * 109.45367 * 174.74007 * 14 13 12 38 38 H 1.09003 * 109.45013 * 58.52385 * 15 14 13 39 39 H 0.97001 * 120.00064 * 95.06609 * 16 15 14 40 40 H 0.96993 * 120.00358 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.49758 * 301.41964 * 25 15 14 42 42 H 1.08999 * 109.52686 * 181.33010 * 25 15 14 43 43 H 1.09002 * 109.58696 * 353.37562 * 26 12 10 44 44 H 1.08997 * 109.58467 * 113.65990 * 26 12 10 45 45 H 1.08997 * 109.45685 * 169.88712 * 27 8 7 46 46 H 1.09006 * 109.45460 * 49.95901 * 27 8 7 47 47 H 1.09002 * 109.68577 * 43.82258 * 28 5 4 48 48 H 1.08998 * 109.72291 * 283.26094 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6944 0.0005 5 6 3.5328 -0.6331 0.0016 6 6 2.2552 -1.0871 0.0005 7 6 1.8722 -2.5429 -0.0040 8 6 3.1012 -3.3636 -0.4169 9 1 3.3134 -3.1941 -1.4725 10 6 2.8265 -4.8279 -0.1894 11 8 2.0090 -5.1700 0.6385 12 7 3.4895 -5.7572 -0.9058 13 6 3.1603 -7.1826 -0.7699 14 6 2.8692 -7.7522 -2.1667 15 6 4.0595 -7.4673 -3.0855 16 7 3.8024 -8.0400 -4.4091 17 6 4.0940 -9.3553 -4.6545 18 1 4.5140 -9.9703 -3.8723 19 6 3.8499 -9.8981 -5.9085 20 7 3.3385 -9.1485 -6.8619 21 14 4.2484 -11.6922 -6.2434 22 1 3.4657 -12.5536 -5.3211 23 1 3.8977 -12.0232 -7.6479 24 1 5.6989 -11.9256 -6.0277 25 6 4.2566 -5.9551 -3.2138 26 6 4.5596 -5.3646 -1.8331 27 6 4.3086 -2.9349 0.4213 28 6 4.7469 -1.5242 0.0047 29 1 -0.3632 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8899 0.5141 32 1 1.5493 -2.8409 0.9935 33 1 1.0639 -2.7079 -0.7163 34 1 4.0030 -7.7115 -0.3249 35 1 2.2800 -7.2955 -0.1370 36 1 1.9743 -7.2825 -2.5745 37 1 2.7146 -8.8287 -2.0948 38 1 4.9590 -7.9163 -2.6640 39 1 3.4255 -7.4876 -5.1117 40 1 3.1683 -9.5277 -7.7383 41 1 3.3485 -5.5024 -3.6118 42 1 5.0896 -5.7521 -3.8869 43 1 4.6028 -4.2776 -1.9019 44 1 5.5145 -5.7462 -1.4717 45 1 5.1299 -3.6327 0.2582 46 1 4.0365 -2.9356 1.4768 47 1 5.4796 -1.1439 0.7165 48 1 5.1847 -1.5528 -0.9931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996917208.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:27 Heat of formation + Delta-G solvation = 67.708300 kcal Electronic energy + Delta-G solvation = -29119.134172 eV Core-core repulsion = 25211.053814 eV Total energy + Delta-G solvation = -3908.080358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.66789 -40.48373 -37.80326 -36.73211 -35.18010 -34.56753 -32.14470 -31.29011 -30.91455 -30.30225 -29.21866 -28.15740 -25.49916 -24.59236 -23.64173 -22.83574 -22.49049 -21.69378 -20.66322 -19.72310 -18.84902 -17.71249 -17.30168 -17.08184 -16.86337 -15.83589 -15.29866 -15.03537 -14.83699 -14.28639 -14.20360 -14.11339 -14.00362 -13.85407 -13.63386 -13.60135 -13.36341 -13.20457 -12.99480 -12.56443 -12.46009 -12.21339 -12.02789 -11.79444 -11.54992 -11.44001 -11.33545 -10.95565 -10.92999 -10.85915 -10.82438 -10.47598 -10.32591 -10.23052 -10.00261 -9.76361 -9.63392 -9.09682 -8.95238 -8.58214 -7.03150 -5.82406 -3.11811 1.28699 2.01989 2.28935 2.53652 2.94938 3.39944 3.44772 3.45564 3.82262 4.06056 4.26236 4.35363 4.46736 4.52807 4.53596 4.56453 4.75044 4.81914 4.86420 4.98809 5.09733 5.13349 5.16703 5.24801 5.30847 5.38712 5.48833 5.52030 5.54500 5.56227 5.66190 5.71694 5.72849 5.82916 5.84827 5.91776 5.98733 6.15095 6.22237 6.27543 6.37171 6.48579 6.52495 6.85307 6.98438 7.41343 7.63664 8.11202 8.25524 8.35927 9.47167 10.03936 10.38304 11.40059 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.002342 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.465484 B =11950.426955 C =12104.021654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.099 5.099 4 N -0.261 5.261 5 C -0.021 4.021 6 C -0.013 4.013 7 C -0.028 4.028 8 C -0.103 4.103 9 H 0.103 0.897 10 C 0.522 3.478 11 O -0.548 6.548 12 N -0.602 5.602 13 C 0.112 3.888 14 C -0.149 4.149 15 C 0.179 3.821 16 N -0.724 5.724 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.141 4.141 26 C 0.106 3.894 27 C -0.109 4.109 28 C -0.030 4.030 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 16.290 15.452 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.076 5.076 3 N -0.077 5.077 4 N -0.126 5.126 5 C -0.161 4.161 6 C -0.148 4.148 7 C -0.068 4.068 8 C -0.125 4.125 9 H 0.121 0.879 10 C 0.309 3.691 11 O -0.426 6.426 12 N -0.334 5.334 13 C -0.010 4.010 14 C -0.191 4.191 15 C 0.069 3.931 16 N -0.365 5.365 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.180 4.180 26 C -0.017 4.017 27 C -0.147 4.147 28 C -0.069 4.069 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.217 0.783 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.240 17.503 15.845 23.716 hybrid contribution -0.311 -1.924 -0.695 2.070 sum -2.551 15.579 15.149 21.880 Atomic orbital electron populations 1.22311 0.72656 1.06045 1.05254 1.46826 1.09228 1.04574 1.46942 1.78584 0.96125 1.11266 1.21706 1.74799 1.09612 1.11930 1.16240 1.21682 0.94968 0.91363 1.08078 1.21786 0.91267 0.92170 1.09530 1.19971 0.97605 0.84827 1.04400 1.21350 0.96463 0.91921 1.02793 0.87897 1.20282 0.80642 0.87431 0.80700 1.90669 1.35266 1.82210 1.34424 1.48164 1.36289 1.07396 1.41579 1.21817 1.01307 0.79065 0.98847 1.22747 1.01251 1.01373 0.93682 1.20161 0.94907 0.90442 0.87612 1.42417 1.76177 1.09973 1.07884 1.19180 1.34988 0.87036 0.96007 0.91213 1.24748 1.01773 0.98087 0.96248 1.69645 1.49841 1.35301 1.03318 0.86281 0.78035 0.84929 0.77015 1.21251 1.21704 1.21233 1.22222 1.02544 0.97946 0.95296 1.21895 0.89942 1.00102 0.89756 1.21628 0.96589 0.96181 1.00328 1.19964 0.92570 0.91045 1.03370 0.88834 0.88136 0.87894 0.88073 0.89700 0.91699 0.89711 0.92319 0.90716 0.93381 0.78297 0.93420 0.91772 0.90372 0.89852 0.90910 0.89743 0.90447 0.89219 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.38 11.27 59.85 0.67 1.05 16 2 N -0.28 -2.76 3.73 -64.00 -0.24 -3.00 16 3 N -0.10 -1.25 13.19 60.35 0.80 -0.46 16 4 N -0.26 -3.50 12.40 33.17 0.41 -3.09 16 5 C -0.02 -0.23 7.11 -83.12 -0.59 -0.82 16 6 C -0.01 -0.13 6.76 -82.50 -0.56 -0.69 16 7 C -0.03 -0.25 4.96 -27.73 -0.14 -0.39 16 8 C -0.10 -0.92 1.64 -91.49 -0.15 -1.07 16 9 H 0.10 0.84 6.45 -51.93 -0.33 0.51 16 10 C 0.52 6.27 6.78 -10.98 -0.07 6.20 16 11 O -0.55 -8.29 15.33 5.56 0.09 -8.21 16 12 N -0.60 -7.28 2.97 -172.50 -0.51 -7.79 16 13 C 0.11 1.53 6.45 -3.49 -0.02 1.51 16 14 C -0.15 -2.47 5.67 -26.39 -0.15 -2.62 16 15 C 0.18 3.19 2.73 -67.89 -0.19 3.00 16 16 N -0.72 -17.06 5.12 -53.39 -0.27 -17.34 16 17 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 18 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 21 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.14 -1.97 5.55 -26.61 -0.15 -2.11 16 26 C 0.11 1.11 5.81 -3.70 -0.02 1.08 16 27 C -0.11 -0.82 4.92 -26.42 -0.13 -0.95 16 28 C -0.03 -0.24 6.30 -27.68 -0.17 -0.41 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.31 7.96 -51.93 -0.41 -0.10 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.94 7.51 -51.93 -0.39 0.55 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.22 7.03 -51.93 -0.37 0.85 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.38 9.71 7.80 -40.82 -0.32 9.39 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.08 0.66 5.21 -51.93 -0.27 0.39 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.54 7.49 -51.93 -0.39 0.15 16 46 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -34.32 379.40 -7.74 -42.07 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.52 Total: 5.23 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.91 Total: -3.19 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.91 Total: -58.39 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.32 -7.74 -42.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996917208.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.775 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds