Wall clock time and date at job start Tue Mar 31 2020 18:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.29108 * 126.00418 * 2 1 4 4 N 1.29020 * 110.26013 * 179.97438 * 3 2 1 5 5 C 1.32919 * 108.63240 * 359.96733 * 4 3 2 6 6 C 1.34392 * 126.00845 * 179.97438 * 2 1 3 7 7 C 1.50532 * 129.25385 * 0.25325 * 6 2 1 8 8 C 1.53443 * 108.31993 * 163.42612 * 7 6 2 9 9 H 1.08998 * 109.46965 * 289.70889 * 8 7 6 10 10 C 1.50708 * 109.45324 * 169.75731 * 8 7 6 11 11 O 1.21273 * 119.99991 * 334.86719 * 10 8 7 12 12 N 1.34779 * 120.00042 * 154.87687 * 10 8 7 13 13 C 1.46924 * 120.63243 * 184.71662 * 12 10 8 14 14 C 1.53625 * 108.54235 * 126.36433 * 13 12 10 15 15 C 1.53040 * 109.23893 * 54.85992 * 14 13 12 16 16 N 1.46498 * 109.45941 * 178.48740 * 15 14 13 17 17 C 1.36935 * 120.00192 * 275.06972 * 16 15 14 18 18 H 1.08005 * 120.00005 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00390 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99903 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00364 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46861 * 60.00156 * 21 19 17 23 23 H 1.48498 * 109.46979 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46878 * 300.00067 * 21 19 17 25 25 C 1.53037 * 109.53997 * 298.50613 * 15 14 13 26 26 C 1.46933 * 120.62801 * 4.99551 * 12 10 8 27 27 C 1.53102 * 109.54529 * 49.73591 * 8 7 6 28 28 C 1.50599 * 129.16283 * 180.10288 * 5 4 3 29 29 H 1.09002 * 109.46571 * 89.97957 * 1 2 3 30 30 H 1.09000 * 109.46815 * 209.97882 * 1 2 3 31 31 H 1.09002 * 109.46842 * 329.98216 * 1 2 3 32 32 H 1.09006 * 109.69662 * 283.15941 * 7 6 2 33 33 H 1.08996 * 109.69567 * 43.70606 * 7 6 2 34 34 H 1.08994 * 109.58478 * 246.20137 * 13 12 10 35 35 H 1.08998 * 109.58075 * 6.62434 * 13 12 10 36 36 H 1.08991 * 109.63490 * 294.86963 * 14 13 12 37 37 H 1.08997 * 109.45367 * 174.74007 * 14 13 12 38 38 H 1.09003 * 109.45013 * 58.52385 * 15 14 13 39 39 H 0.97001 * 120.00064 * 95.06609 * 16 15 14 40 40 H 0.96993 * 120.00358 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.49758 * 301.41964 * 25 15 14 42 42 H 1.08999 * 109.52686 * 181.33010 * 25 15 14 43 43 H 1.09002 * 109.58696 * 353.37562 * 26 12 10 44 44 H 1.08997 * 109.58467 * 113.65990 * 26 12 10 45 45 H 1.08997 * 109.45685 * 169.88712 * 27 8 7 46 46 H 1.09006 * 109.45460 * 49.95901 * 27 8 7 47 47 H 1.09002 * 109.68577 * 43.82258 * 28 5 4 48 48 H 1.08998 * 109.72291 * 283.26094 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6944 0.0005 5 6 3.5328 -0.6331 0.0016 6 6 2.2552 -1.0871 0.0005 7 6 1.8722 -2.5429 -0.0040 8 6 3.1012 -3.3636 -0.4169 9 1 3.3134 -3.1941 -1.4725 10 6 2.8265 -4.8279 -0.1894 11 8 2.0090 -5.1700 0.6385 12 7 3.4895 -5.7572 -0.9058 13 6 3.1603 -7.1826 -0.7699 14 6 2.8692 -7.7522 -2.1667 15 6 4.0595 -7.4673 -3.0855 16 7 3.8024 -8.0400 -4.4091 17 6 4.0940 -9.3553 -4.6545 18 1 4.5140 -9.9703 -3.8723 19 6 3.8499 -9.8981 -5.9085 20 7 3.3385 -9.1485 -6.8619 21 14 4.2484 -11.6922 -6.2434 22 1 3.4657 -12.5536 -5.3211 23 1 3.8977 -12.0232 -7.6479 24 1 5.6989 -11.9256 -6.0277 25 6 4.2566 -5.9551 -3.2138 26 6 4.5596 -5.3646 -1.8331 27 6 4.3086 -2.9349 0.4213 28 6 4.7469 -1.5242 0.0047 29 1 -0.3632 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8899 0.5141 32 1 1.5493 -2.8409 0.9935 33 1 1.0639 -2.7079 -0.7163 34 1 4.0030 -7.7115 -0.3249 35 1 2.2800 -7.2955 -0.1370 36 1 1.9743 -7.2825 -2.5745 37 1 2.7146 -8.8287 -2.0948 38 1 4.9590 -7.9163 -2.6640 39 1 3.4255 -7.4876 -5.1117 40 1 3.1683 -9.5277 -7.7383 41 1 3.3485 -5.5024 -3.6118 42 1 5.0896 -5.7521 -3.8869 43 1 4.6028 -4.2776 -1.9019 44 1 5.5145 -5.7462 -1.4717 45 1 5.1299 -3.6327 0.2582 46 1 4.0365 -2.9356 1.4768 47 1 5.4796 -1.1439 0.7165 48 1 5.1847 -1.5528 -0.9931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996917208.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:26 Heat of formation + Delta-G solvation = 44.630688 kcal Electronic energy + Delta-G solvation = -29120.134892 eV Core-core repulsion = 25211.053814 eV Total energy + Delta-G solvation = -3909.081078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.42951 -41.44612 -38.94102 -37.57232 -36.13074 -35.87244 -33.80762 -32.34612 -31.54678 -31.34819 -30.71629 -28.72943 -26.77023 -25.76758 -24.56125 -24.06179 -23.67516 -22.39464 -21.73184 -20.70930 -19.86579 -19.04920 -18.50372 -17.99019 -17.64579 -16.80173 -16.69130 -16.20207 -15.74516 -15.47124 -15.33084 -15.08740 -15.00557 -14.79498 -14.78081 -14.55500 -14.23648 -14.11331 -13.72799 -13.68413 -13.39435 -13.17108 -12.99133 -12.91389 -12.79173 -12.63179 -12.53003 -12.22091 -12.17180 -12.13981 -11.91232 -11.86248 -11.65798 -11.56528 -11.34754 -10.93574 -10.86621 -10.65529 -9.86123 -9.62759 -8.98092 -7.92254 -5.20022 0.53632 1.41279 1.48438 1.48913 1.50773 1.56674 1.62771 2.01978 2.57937 3.12106 3.34948 3.41246 3.64795 3.74158 3.78486 3.83440 3.88244 3.94653 4.09011 4.21052 4.22487 4.23976 4.25245 4.42276 4.46458 4.46928 4.51542 4.56360 4.65020 4.68494 4.83473 4.88039 4.89759 4.90211 4.92224 5.03553 5.04203 5.09561 5.17628 5.22421 5.34665 5.38424 5.52122 5.57599 5.61239 5.65651 6.30296 6.46815 7.16468 7.36514 7.45360 8.13990 8.35401 9.31038 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.002342 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.465484 B =11950.426955 C =12104.021654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.278 5.278 3 N -0.130 5.130 4 N -0.298 5.298 5 C -0.031 4.031 6 C -0.014 4.014 7 C -0.022 4.022 8 C -0.097 4.097 9 H 0.117 0.883 10 C 0.524 3.476 11 O -0.580 6.580 12 N -0.603 5.603 13 C 0.122 3.878 14 C -0.138 4.138 15 C 0.172 3.828 16 N -0.738 5.738 17 C -0.235 4.235 18 H 0.076 0.924 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.968 3.032 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.277 1.277 25 C -0.133 4.133 26 C 0.112 3.888 27 C -0.101 4.101 28 C -0.027 4.027 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.371 0.629 40 H 0.249 0.751 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.905 16.529 16.658 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.071 5.071 3 N -0.107 5.107 4 N -0.162 5.162 5 C -0.173 4.173 6 C -0.149 4.149 7 C -0.062 4.062 8 C -0.119 4.119 9 H 0.135 0.865 10 C 0.313 3.687 11 O -0.461 6.461 12 N -0.335 5.335 13 C -0.001 4.001 14 C -0.179 4.179 15 C 0.064 3.936 16 N -0.377 5.377 17 C -0.367 4.367 18 H 0.094 0.906 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.797 3.203 22 H -0.207 1.207 23 H -0.226 1.226 24 H -0.203 1.203 25 C -0.172 4.172 26 C -0.010 4.010 27 C -0.140 4.140 28 C -0.066 4.066 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.136 0.864 44 H 0.112 0.888 45 H 0.122 0.878 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.272 17.776 17.105 24.702 hybrid contribution -0.678 -1.985 -0.995 2.322 sum -1.951 15.792 16.110 22.643 Atomic orbital electron populations 1.22732 0.70249 1.07626 1.06763 1.47198 1.10638 1.03964 1.45274 1.78503 0.96456 1.12444 1.23306 1.74747 1.10264 1.13439 1.17717 1.22263 0.96508 0.90953 1.07529 1.21968 0.91169 0.92578 1.09209 1.19936 0.97880 0.83974 1.04390 1.21355 0.97160 0.89437 1.03911 0.86488 1.20753 0.79648 0.88442 0.79844 1.90664 1.36616 1.82880 1.35908 1.48210 1.36730 1.06659 1.41895 1.21586 1.01732 0.80382 0.96378 1.22520 0.99865 1.00119 0.95362 1.20447 0.95051 0.93022 0.85106 1.42660 1.76078 1.09134 1.09819 1.19574 1.32906 0.88379 0.95808 0.90591 1.25506 1.03022 1.01888 0.96502 1.69798 1.52119 1.36820 1.03443 0.85295 0.78131 0.80634 0.76228 1.20663 1.22564 1.20278 1.22111 1.02337 0.94866 0.97868 1.22024 0.89997 1.02023 0.86979 1.21607 0.96410 0.96322 0.99632 1.20075 0.91611 0.90383 1.04532 0.87307 0.86263 0.86737 0.88558 0.88893 0.90104 0.90462 0.94074 0.92788 0.93253 0.79728 0.94195 0.92585 0.90151 0.86440 0.88813 0.87806 0.91062 0.88450 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 11.27 127.77 1.44 1.96 16 2 N -0.28 -5.07 3.73 -356.39 -1.33 -6.40 16 3 N -0.13 -3.23 13.19 37.02 0.49 -2.74 16 4 N -0.30 -7.82 12.40 -48.98 -0.61 -8.43 16 5 C -0.03 -0.63 7.11 41.75 0.30 -0.33 16 6 C -0.01 -0.25 6.76 41.50 0.28 0.03 16 7 C -0.02 -0.34 4.96 29.94 0.15 -0.19 16 8 C -0.10 -1.42 1.64 -11.35 -0.02 -1.44 16 9 H 0.12 1.43 6.45 -2.39 -0.02 1.41 16 10 C 0.52 11.19 6.78 87.66 0.59 11.79 16 11 O -0.58 -16.56 15.33 -3.01 -0.05 -16.61 16 12 N -0.60 -12.84 2.97 -818.05 -2.43 -15.27 16 13 C 0.12 3.12 6.45 86.51 0.56 3.68 16 14 C -0.14 -4.48 5.67 30.82 0.17 -4.31 16 15 C 0.17 5.94 2.73 45.02 0.12 6.06 16 16 N -0.74 -34.85 5.12 -322.82 -1.65 -36.50 16 17 C -0.23 -12.43 9.93 84.03 0.83 -11.60 16 18 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 19 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.97 -58.18 13.06 21.65 0.28 -57.90 16 21 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 C -0.13 -3.41 5.55 30.67 0.17 -3.24 16 26 C 0.11 1.89 5.81 86.36 0.50 2.40 16 27 C -0.10 -1.17 4.92 30.79 0.15 -1.02 16 28 C -0.03 -0.34 6.30 29.98 0.19 -0.16 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.12 0.50 7.96 -2.39 -0.02 0.48 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 1.61 7.51 -2.38 -0.02 1.59 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 2.13 7.03 -2.39 -0.02 2.12 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 39 H 0.37 19.10 7.80 -92.71 -0.72 18.38 16 40 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.12 1.26 5.21 -2.39 -0.01 1.25 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 45 H 0.10 0.84 7.49 -2.39 -0.02 0.82 16 46 H 0.07 0.95 8.12 -2.38 -0.02 0.93 16 47 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -76.02 379.40 2.90 -73.12 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.25 Total: 23.85 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.91 Total: -0.20 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -5.24 Total: -127.23 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.05 Total: -16.61 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -76.02 2.90 -73.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996917208.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.754 kcal (2) G-P(sol) polarization free energy of solvation -76.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds