Wall clock time and date at job start Tue Mar 31 2020 17:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47258 * 2 1 4 4 C 1.34816 * 126.59170 * 124.99468 * 3 2 1 5 5 C 1.36598 * 106.83975 * 179.97438 * 4 3 2 6 6 C 1.47523 * 125.77226 * 179.97438 * 5 4 3 7 7 O 1.21592 * 119.99640 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00058 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00020 * 179.97438 * 8 6 5 10 10 C 1.53003 * 115.54940 * 180.02562 * 9 8 6 11 11 C 1.53036 * 109.46184 * 34.41750 * 10 9 8 12 12 C 1.53186 * 109.31502 * 178.61289 * 11 10 9 13 13 N 1.46925 * 108.77388 * 54.63842 * 12 11 10 14 14 C 1.36934 * 120.63215 * 126.41572 * 13 12 11 15 15 H 1.08006 * 120.00121 * 207.65629 * 14 13 12 16 16 C 1.38814 * 119.99947 * 27.65531 * 14 13 12 17 17 N 1.31612 * 120.00200 * 17.38313 * 16 14 13 18 18 Si 1.86798 * 119.99944 * 197.37947 * 16 14 13 19 19 H 1.48506 * 109.47458 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47335 * 120.00061 * 18 16 14 21 21 H 1.48504 * 109.47113 * 240.00357 * 18 16 14 22 22 C 1.46931 * 118.73805 * 306.38962 * 13 12 11 23 23 C 1.53041 * 109.45652 * 274.34912 * 10 9 8 24 24 C 1.52999 * 117.50033 * 325.67681 * 9 8 6 25 25 C 1.53004 * 117.49466 * 34.33602 * 9 8 6 26 26 N 1.34402 * 108.45326 * 0.24444 * 5 4 3 27 27 N 1.28762 * 109.52818 * 359.58987 * 26 5 4 28 28 H 1.09000 * 109.47037 * 59.99793 * 1 2 3 29 29 H 1.08997 * 109.47501 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47390 * 300.00073 * 1 2 3 31 31 H 1.09004 * 109.46799 * 240.00099 * 2 1 3 32 32 H 1.09007 * 109.46716 * 120.00468 * 2 1 3 33 33 H 1.08001 * 126.58155 * 359.97438 * 4 3 2 34 34 H 0.96999 * 120.00039 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.44844 * 154.39007 * 10 9 8 36 36 H 1.08996 * 109.49796 * 298.56759 * 11 10 9 37 37 H 1.09006 * 109.49432 * 58.66411 * 11 10 9 38 38 H 1.08996 * 109.58836 * 174.42399 * 12 11 10 39 39 H 1.09007 * 109.58772 * 294.85151 * 12 11 10 40 40 H 0.96996 * 120.00390 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.58954 * 293.82227 * 22 13 12 42 42 H 1.09002 * 109.58566 * 173.39473 * 22 13 12 43 43 H 1.09000 * 109.50038 * 301.33653 * 23 10 9 44 44 H 1.08998 * 109.49630 * 61.40791 * 23 10 9 45 45 H 1.09004 * 117.49856 * 214.99965 * 24 9 8 46 46 H 1.09003 * 117.49963 * 0.02562 * 24 9 8 47 47 H 1.08995 * 117.50184 * 359.97438 * 25 9 8 48 48 H 1.09004 * 117.49474 * 144.97549 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8716 1.9319 0.8867 5 6 3.0510 3.2321 0.5082 6 6 3.9077 4.2191 1.1925 7 8 4.5311 3.8979 2.1858 8 7 4.0000 5.4764 0.7161 9 6 4.8503 6.4567 1.3960 10 6 4.8795 7.8522 0.7693 11 6 3.5039 8.1763 0.1821 12 6 3.5269 9.5874 -0.4136 13 7 4.6310 9.6751 -1.3791 14 6 4.4048 10.1003 -2.6609 15 1 5.0453 9.7635 -3.4626 16 6 3.3522 10.9643 -2.9300 17 7 2.7898 11.6413 -1.9514 18 14 2.7338 11.1663 -4.6811 19 1 3.5287 10.3014 -5.5897 20 1 1.3033 10.7739 -4.7493 21 1 2.8784 12.5846 -5.0966 22 6 5.9825 9.2984 -0.9429 23 6 5.9319 7.8905 -0.3411 24 6 4.9557 6.3645 2.9195 25 6 6.1390 5.9456 2.0434 26 7 2.3104 3.4617 -0.5896 27 7 1.6887 2.3843 -0.9224 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.3260 1.4396 1.7338 34 1 3.5029 5.7325 -0.0765 35 1 5.1308 8.5880 1.5332 36 1 3.2628 7.4555 -0.5991 37 1 2.7514 8.1259 0.9691 38 1 2.5823 9.7858 -0.9199 39 1 3.6781 10.3174 0.3816 40 1 2.0545 12.2453 -2.1394 41 1 6.3339 10.0047 -0.1908 42 1 6.6580 9.3061 -1.7983 43 1 6.9076 7.6367 0.0734 44 1 5.6682 7.1719 -1.1172 45 1 5.0461 7.2979 3.4752 46 1 4.3927 5.5741 3.4161 47 1 6.3539 4.8800 1.9638 48 1 7.0079 6.6034 2.0223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000299536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:11 Heat of formation + Delta-G solvation = 88.943018 kcal Electronic energy + Delta-G solvation = -29109.673871 eV Core-core repulsion = 25202.514320 eV Total energy + Delta-G solvation = -3907.159551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.24998 -41.40142 -39.32356 -37.39516 -36.38493 -34.55922 -34.06255 -32.32329 -32.16594 -31.35583 -31.06052 -27.41017 -25.61160 -25.23680 -24.20641 -23.99342 -22.92778 -22.74130 -21.76214 -21.14000 -20.14222 -19.25594 -18.68949 -17.54760 -17.15666 -16.82089 -16.68201 -16.00434 -15.79351 -15.65574 -15.53670 -15.30921 -15.04979 -14.95833 -14.72700 -14.53311 -14.28432 -13.89823 -13.80207 -13.35911 -13.12808 -13.05560 -12.95763 -12.61206 -12.59188 -12.52337 -12.31978 -12.12390 -12.04629 -11.97092 -11.86624 -11.75848 -11.46657 -11.34037 -11.13922 -11.03525 -10.76746 -10.51113 -10.35552 -9.52722 -8.65062 -7.85220 -5.29146 0.15512 0.58813 1.13366 1.45848 1.48432 1.58396 2.05774 2.17029 2.52719 3.03336 3.14832 3.28814 3.38782 3.62336 3.71251 3.76296 3.91206 3.96378 3.98757 4.05512 4.21151 4.28182 4.34295 4.37934 4.51585 4.55867 4.63219 4.72361 4.74528 4.77283 4.87872 4.91560 4.95601 5.03174 5.09091 5.20948 5.22142 5.26206 5.28360 5.41234 5.42142 5.49518 5.54995 5.61743 5.68099 5.79575 6.41532 6.42708 6.88724 7.12096 7.17865 7.90129 8.41008 9.21048 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011521 B = 0.003159 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.683984 B = 8860.517673 C =10733.524622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.348 5.348 4 C 0.113 3.887 5 C -0.129 4.129 6 C 0.604 3.396 7 O -0.552 6.552 8 N -0.677 5.677 9 C 0.099 3.901 10 C -0.031 4.031 11 C -0.120 4.120 12 C 0.179 3.821 13 N -0.610 5.610 14 C -0.258 4.258 15 H 0.064 0.936 16 C -0.051 4.051 17 N -0.934 5.934 18 Si 0.962 3.038 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.140 3.860 23 C -0.112 4.112 24 C -0.171 4.171 25 C -0.164 4.164 26 N -0.235 5.235 27 N -0.092 5.092 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.055 0.945 31 H 0.113 0.887 32 H 0.145 0.855 33 H 0.242 0.758 34 H 0.411 0.589 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.052 0.948 39 H -0.001 1.001 40 H 0.249 0.751 41 H 0.018 0.982 42 H 0.052 0.948 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 -26.439 10.015 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.134 5.134 4 C -0.045 4.045 5 C -0.270 4.270 6 C 0.390 3.610 7 O -0.430 6.430 8 N -0.326 5.326 9 C 0.012 3.988 10 C -0.050 4.050 11 C -0.159 4.159 12 C 0.053 3.947 13 N -0.334 5.334 14 C -0.389 4.389 15 H 0.082 0.918 16 C -0.246 4.246 17 N -0.580 5.580 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.218 1.218 21 H -0.219 1.219 22 C 0.015 3.985 23 C -0.150 4.150 24 C -0.210 4.210 25 C -0.203 4.203 26 N -0.108 5.108 27 N -0.072 5.072 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.163 0.837 33 H 0.258 0.742 34 H 0.248 0.752 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.017 0.983 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.067 0.933 45 H 0.124 0.876 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.347 -26.271 9.392 27.901 hybrid contribution -0.438 0.519 -0.614 0.916 sum -0.785 -25.751 8.778 27.217 Atomic orbital electron populations 1.22086 0.92806 1.04964 1.02533 1.22589 0.96868 0.73940 1.07799 1.51005 1.30571 1.13219 1.18577 1.23883 0.91849 0.92771 0.96017 1.21586 1.08901 0.96396 1.00080 1.16918 0.80064 0.81139 0.82921 1.90728 1.46712 1.79587 1.26010 1.45280 1.46791 1.09436 1.31046 1.20824 0.96070 0.89355 0.92561 1.20618 0.95680 0.91567 0.97167 1.21974 0.96613 0.98296 0.98994 1.20557 0.92097 0.91716 0.90341 1.44321 1.03134 1.76592 1.09304 1.19522 1.13396 1.20548 0.85393 0.91816 1.25734 1.01686 0.96539 1.00671 1.70180 1.26795 1.28638 1.32414 0.85278 0.77815 0.77087 0.80720 1.19242 1.21813 1.21874 1.21077 0.86526 0.93927 0.96981 1.21907 0.98738 0.97253 0.97143 1.23458 1.02141 1.03340 0.92015 1.23369 0.92034 1.02413 1.02445 1.74688 1.05551 1.19335 1.11194 1.81917 1.21195 0.90893 1.13228 0.92956 0.87116 0.92581 0.86871 0.83701 0.74166 0.75167 0.89723 0.93310 0.91896 0.92985 0.98276 0.94196 0.96360 0.92945 0.89894 0.93332 0.87596 0.88489 0.88387 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.12 71.98 0.73 -0.32 16 2 C 0.11 0.55 7.26 86.38 0.63 1.17 16 3 N -0.35 -5.50 3.69 -347.08 -1.28 -6.78 16 4 C 0.11 1.85 11.27 83.85 0.95 2.80 16 5 C -0.13 -3.27 6.99 40.82 0.29 -2.99 16 6 C 0.60 16.99 7.52 86.69 0.65 17.64 16 7 O -0.55 -16.04 12.34 -4.01 -0.05 -16.09 16 8 N -0.68 -20.04 5.38 -426.06 -2.29 -22.33 16 9 C 0.10 2.83 2.48 3.61 0.01 2.84 16 10 C -0.03 -1.01 2.28 -10.77 -0.02 -1.03 16 11 C -0.12 -4.56 4.83 30.67 0.15 -4.41 16 12 C 0.18 8.75 5.31 86.36 0.46 9.21 16 13 N -0.61 -31.07 2.99 -699.08 -2.09 -33.16 16 14 C -0.26 -14.53 9.59 84.03 0.81 -13.73 16 15 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 16 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 17 N -0.93 -56.30 11.19 21.65 0.24 -56.06 16 18 Si 0.96 46.16 29.59 68.60 2.03 48.19 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 22 C 0.14 5.82 6.52 86.36 0.56 6.38 16 23 C -0.11 -3.73 5.22 30.67 0.16 -3.57 16 24 C -0.17 -4.50 9.37 30.62 0.29 -4.21 16 25 C -0.16 -4.23 8.91 30.62 0.27 -3.96 16 26 N -0.23 -6.89 12.04 -49.99 -0.60 -7.50 16 27 N -0.09 -2.35 13.65 37.02 0.51 -1.85 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.15 -0.35 8.08 -2.38 -0.02 -0.37 16 33 H 0.24 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.41 13.00 6.34 -92.71 -0.59 12.41 16 35 H 0.08 2.67 7.90 -2.39 -0.02 2.66 16 36 H 0.05 1.92 6.50 -2.39 -0.02 1.90 16 37 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.05 2.91 6.04 -2.39 -0.01 2.90 16 39 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 40 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.05 2.15 7.93 -2.39 -0.02 2.13 16 43 H 0.08 2.30 7.25 -2.39 -0.02 2.28 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.11 2.49 8.05 -2.38 -0.02 2.47 16 46 H 0.10 2.75 6.37 -2.39 -0.02 2.73 16 47 H 0.10 2.72 6.37 -2.39 -0.02 2.71 16 48 H 0.11 2.46 7.60 -2.39 -0.02 2.44 16 Total: -1.00 -74.11 382.57 3.18 -70.93 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.39 Total: 21.32 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 6.33 Total: 3.33 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -5.52 Total: -127.67 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.05 Total: -16.09 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -74.11 3.18 -70.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000299536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.872 kcal (2) G-P(sol) polarization free energy of solvation -74.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds