Wall clock time and date at job start Tue Mar 31 2020 18:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.29339 * 126.02205 * 2 1 4 4 N 1.29023 * 110.23528 * 180.10062 * 3 2 1 5 5 C 1.32903 * 108.63926 * 0.06276 * 4 3 2 6 6 C 1.34398 * 126.00722 * 180.11982 * 2 1 3 7 7 C 1.50528 * 129.25486 * 359.82194 * 6 2 1 8 8 C 1.53439 * 108.32278 * 196.49498 * 7 6 2 9 9 H 1.08991 * 109.45887 * 70.30408 * 8 7 6 10 10 C 1.50708 * 109.44185 * 190.26118 * 8 7 6 11 11 O 1.21286 * 119.99599 * 0.07484 * 10 8 7 12 12 N 1.34777 * 119.99989 * 180.02562 * 10 8 7 13 13 C 1.46496 * 119.99572 * 179.97438 * 12 10 8 14 14 H 1.08995 * 109.50379 * 324.93460 * 13 12 10 15 15 C 1.53045 * 109.49644 * 204.83579 * 13 12 10 16 16 C 1.53039 * 109.53743 * 178.68719 * 15 13 12 17 17 C 1.53187 * 109.31294 * 61.36552 * 16 15 13 18 18 N 1.46922 * 108.77748 * 305.36554 * 17 16 15 19 19 C 1.36947 * 120.62982 * 233.58909 * 18 17 16 20 20 H 1.08001 * 119.99837 * 27.69125 * 19 18 17 21 21 C 1.38805 * 119.99804 * 207.69737 * 19 18 17 22 22 N 1.31615 * 120.00292 * 17.35292 * 21 19 18 23 23 Si 1.86805 * 120.00012 * 197.35473 * 21 19 18 24 24 H 1.48495 * 109.46914 * 89.99579 * 23 21 19 25 25 H 1.48497 * 109.47109 * 209.99817 * 23 21 19 26 26 H 1.48497 * 109.46870 * 329.99928 * 23 21 19 27 27 C 1.46924 * 118.74277 * 53.60878 * 18 17 16 28 28 C 1.53104 * 109.55670 * 310.27346 * 8 7 6 29 29 C 1.50591 * 129.16707 * 179.86725 * 5 4 3 30 30 H 1.09004 * 109.47331 * 269.87966 * 1 2 3 31 31 H 1.09001 * 109.47263 * 29.88100 * 1 2 3 32 32 H 1.09001 * 109.47260 * 149.88138 * 1 2 3 33 33 H 1.09003 * 109.70102 * 76.78324 * 7 6 2 34 34 H 1.09003 * 109.72359 * 316.21546 * 7 6 2 35 35 H 0.96997 * 119.99643 * 0.02562 * 12 10 8 36 36 H 1.08999 * 109.45613 * 298.70988 * 15 13 12 37 37 H 1.09001 * 109.45771 * 58.66314 * 15 13 12 38 38 H 1.08997 * 109.49495 * 301.41463 * 16 15 13 39 39 H 1.08999 * 109.52222 * 181.33217 * 16 15 13 40 40 H 1.09004 * 109.58899 * 185.57489 * 17 16 15 41 41 H 1.09006 * 109.58894 * 65.15421 * 17 16 15 42 42 H 0.97001 * 120.00435 * 180.02562 * 22 21 19 43 43 H 1.08994 * 109.58861 * 186.60934 * 27 18 17 44 44 H 1.08995 * 109.58630 * 66.17591 * 27 18 17 45 45 H 1.08994 * 109.45451 * 310.01937 * 28 8 7 46 46 H 1.09005 * 109.43381 * 190.07211 * 28 8 7 47 47 H 1.09005 * 109.69284 * 76.87932 * 29 5 4 48 48 H 1.09002 * 109.69286 * 316.34265 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2256 1.0461 0.0000 4 7 3.4671 0.6951 -0.0021 5 6 3.5333 -0.6323 -0.0050 6 6 2.2551 -1.0872 -0.0023 7 6 1.8721 -2.5430 -0.0017 8 6 3.1011 -3.3649 0.4086 9 1 3.3133 -3.1983 1.4646 10 6 2.8262 -4.8284 0.1765 11 8 1.7561 -5.1804 -0.2730 12 7 3.7696 -5.7457 0.4676 13 6 3.5020 -7.1684 0.2426 14 1 2.4529 -7.3786 0.4504 15 6 4.3851 -8.0071 1.1694 16 6 4.0829 -9.4924 0.9583 17 6 4.4032 -9.8737 -0.4903 18 7 3.6676 -8.9746 -1.3898 19 6 2.8595 -9.4795 -2.3733 20 1 2.3973 -10.4476 -2.2485 21 6 2.6345 -8.7470 -3.5308 22 7 3.4368 -7.7527 -3.8467 23 14 1.1930 -9.1726 -4.6400 24 1 -0.0026 -8.4007 -4.2159 25 1 1.5311 -8.8294 -6.0447 26 1 0.9046 -10.6259 -4.5412 27 6 3.8158 -7.5234 -1.2143 28 6 4.3086 -2.9339 -0.4284 29 6 4.7467 -1.5241 -0.0109 30 1 -0.3634 -0.0022 1.0277 31 1 -0.3634 0.8910 -0.5120 32 1 -0.3634 -0.8889 -0.5157 33 1 1.5492 -2.8384 -1.0000 34 1 1.0639 -2.7105 0.7103 35 1 4.6255 -5.4640 0.8269 36 1 5.4340 -7.8143 0.9440 37 1 4.1814 -7.7387 2.2060 38 1 3.0284 -9.6812 1.1596 39 1 4.6950 -10.0884 1.6352 40 1 4.0975 -10.9039 -0.6732 41 1 5.4740 -9.7715 -0.6669 42 1 3.2794 -7.2406 -4.6554 43 1 3.1224 -7.0028 -1.8747 44 1 4.8386 -7.2294 -1.4498 45 1 4.0365 -2.9319 -1.4839 46 1 5.1298 -3.6322 -0.2666 47 1 5.1841 -1.5559 0.9870 48 1 5.4800 -1.1420 -0.7211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008323455.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:49 Heat of formation + Delta-G solvation = 71.055367 kcal Electronic energy + Delta-G solvation = -29512.131052 eV Core-core repulsion = 25604.195834 eV Total energy + Delta-G solvation = -3907.935218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.49834 -39.89556 -37.65796 -36.46162 -35.04339 -34.18402 -32.71511 -30.75585 -30.69571 -30.00729 -28.69590 -28.00894 -25.29112 -24.77527 -23.42250 -22.24067 -21.82989 -21.53038 -20.35410 -19.61577 -19.15567 -17.48095 -17.04224 -16.79470 -16.45339 -15.72214 -15.08650 -14.87398 -14.62056 -14.09480 -14.03182 -13.98071 -13.77089 -13.67266 -13.47634 -13.33663 -13.07326 -12.96387 -12.44677 -12.34273 -12.27051 -12.11783 -11.91614 -11.62733 -11.30635 -11.12693 -11.03055 -10.78264 -10.75208 -10.64735 -10.50555 -10.25977 -10.10440 -10.00437 -9.95942 -9.55279 -9.36395 -8.95077 -8.57588 -8.44737 -6.67823 -5.77477 -3.20601 1.41373 2.15492 2.41667 2.92853 3.39126 3.42924 3.48050 3.48333 4.01986 4.28877 4.45077 4.52167 4.62453 4.65553 4.67750 4.75583 4.96918 5.03732 5.15872 5.28590 5.32253 5.33185 5.38168 5.44622 5.52158 5.60545 5.66973 5.69037 5.76792 5.86462 5.89147 6.05229 6.07067 6.11985 6.14347 6.30704 6.39678 6.40700 6.47087 6.67202 6.75058 6.90447 6.93943 7.27569 7.70257 7.80843 7.88510 8.37270 8.45997 8.58398 9.21456 9.85313 10.39902 11.30407 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.003206 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.900526 B = 8732.784258 C = 9859.057132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.286 5.286 3 N -0.102 5.102 4 N -0.262 5.262 5 C -0.023 4.023 6 C -0.010 4.010 7 C -0.027 4.027 8 C -0.100 4.100 9 H 0.101 0.899 10 C 0.516 3.484 11 O -0.532 6.532 12 N -0.718 5.718 13 C 0.116 3.884 14 H 0.081 0.919 15 C -0.116 4.116 16 C -0.131 4.131 17 C 0.142 3.858 18 N -0.589 5.589 19 C -0.256 4.256 20 H 0.066 0.934 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.901 3.099 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.168 3.832 28 C -0.113 4.113 29 C -0.030 4.030 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.393 0.607 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.095 0.905 44 H 0.017 0.983 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 11.228 12.266 16.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.078 5.078 3 N -0.080 5.080 4 N -0.126 5.126 5 C -0.163 4.163 6 C -0.144 4.144 7 C -0.066 4.066 8 C -0.122 4.122 9 H 0.119 0.881 10 C 0.301 3.699 11 O -0.408 6.408 12 N -0.368 5.368 13 C 0.011 3.989 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.171 4.171 17 C 0.016 3.984 18 N -0.312 5.312 19 C -0.386 4.386 20 H 0.084 0.916 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.731 3.269 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.041 3.959 28 C -0.151 4.151 29 C -0.069 4.069 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.226 0.774 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.113 0.887 44 H 0.035 0.965 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.028 12.635 11.765 17.294 hybrid contribution -0.591 -0.991 -0.410 1.224 sum -1.618 11.644 11.355 16.344 Atomic orbital electron populations 1.22294 0.72733 1.06137 1.05050 1.46877 1.09182 1.04633 1.47101 1.78639 0.96087 1.11215 1.22055 1.74762 1.09681 1.11993 1.16200 1.21721 0.95054 0.91289 1.08217 1.21907 0.91231 0.92315 1.08959 1.19945 0.97726 0.84371 1.04577 1.21308 0.96285 0.92326 1.02254 0.88138 1.20220 0.84466 0.87212 0.77994 1.90750 1.24742 1.81574 1.43755 1.46057 1.17345 1.07594 1.65796 1.21989 1.00047 0.77333 0.99538 0.90072 1.21674 0.99513 0.96287 0.97923 1.21999 1.01243 0.94538 0.99312 1.20959 0.94508 0.94516 0.88463 1.43976 1.51766 1.00275 1.35148 1.19159 1.20783 1.04004 0.94643 0.91605 1.25009 0.98577 0.99109 0.96473 1.70013 1.35954 1.23035 1.25260 0.86315 0.82866 0.78050 0.79697 1.21304 1.21780 1.20410 1.21085 0.99524 0.85017 0.90307 1.21671 0.96718 0.95877 1.00834 1.19953 0.92525 0.91356 1.03030 0.89004 0.87980 0.88025 0.88183 0.89560 0.77391 0.92229 0.93141 0.92163 0.92644 0.92649 0.96390 0.93679 0.88722 0.96508 0.90219 0.89679 0.89750 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 11.27 59.84 0.67 1.18 16 2 N -0.29 -3.24 3.73 -63.99 -0.24 -3.48 16 3 N -0.10 -1.43 13.20 60.35 0.80 -0.64 16 4 N -0.26 -3.88 12.40 33.18 0.41 -3.47 16 5 C -0.02 -0.29 7.11 -83.10 -0.59 -0.88 16 6 C -0.01 -0.12 6.77 -82.47 -0.56 -0.67 16 7 C -0.03 -0.30 4.68 -27.74 -0.13 -0.43 16 8 C -0.10 -1.08 2.50 -91.49 -0.23 -1.31 16 9 H 0.10 0.88 8.12 -51.93 -0.42 0.46 16 10 C 0.52 7.83 7.12 -10.98 -0.08 7.75 16 11 O -0.53 -10.61 15.48 5.55 0.09 -10.53 16 12 N -0.72 -10.35 4.90 -53.68 -0.26 -10.61 16 13 C 0.12 2.11 2.60 -67.81 -0.18 1.94 16 14 H 0.08 1.71 7.58 -51.93 -0.39 1.31 16 15 C -0.12 -1.75 5.35 -26.69 -0.14 -1.89 16 16 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 17 C 0.14 2.86 6.52 -3.72 -0.02 2.83 16 18 N -0.59 -14.55 2.99 -172.32 -0.52 -15.07 16 19 C -0.26 -7.06 9.59 -15.06 -0.14 -7.21 16 20 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 21 C 0.01 0.21 4.91 -17.43 -0.09 0.12 16 22 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 23 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.17 3.91 4.88 -3.71 -0.02 3.89 16 28 C -0.11 -1.14 5.17 -26.46 -0.14 -1.27 16 29 C -0.03 -0.29 6.30 -27.72 -0.17 -0.46 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.52 7.96 -51.93 -0.41 0.11 16 33 H 0.10 1.27 7.78 -51.93 -0.40 0.87 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.39 4.27 7.93 -40.82 -0.32 3.94 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.09 2.62 6.04 -51.93 -0.31 2.30 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.95 8.12 -51.93 -0.42 0.52 16 46 H 0.08 0.74 7.30 -51.93 -0.38 0.36 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -35.45 380.18 -8.06 -43.51 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.68 Total: 1.74 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.98 Total: 1.31 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.81 Total: -58.87 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.45 -8.06 -43.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008323455.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.565 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds