Wall clock time and date at job start Tue Mar 31 2020 18:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.29339 * 126.02205 * 2 1 4 4 N 1.29023 * 110.23528 * 180.10062 * 3 2 1 5 5 C 1.32903 * 108.63926 * 0.06276 * 4 3 2 6 6 C 1.34398 * 126.00722 * 180.11982 * 2 1 3 7 7 C 1.50528 * 129.25486 * 359.82194 * 6 2 1 8 8 C 1.53439 * 108.32278 * 196.49498 * 7 6 2 9 9 H 1.08991 * 109.45887 * 70.30408 * 8 7 6 10 10 C 1.50708 * 109.44185 * 190.26118 * 8 7 6 11 11 O 1.21286 * 119.99599 * 0.07484 * 10 8 7 12 12 N 1.34777 * 119.99989 * 180.02562 * 10 8 7 13 13 C 1.46496 * 119.99572 * 179.97438 * 12 10 8 14 14 H 1.08995 * 109.50379 * 324.93460 * 13 12 10 15 15 C 1.53045 * 109.49644 * 204.83579 * 13 12 10 16 16 C 1.53039 * 109.53743 * 178.68719 * 15 13 12 17 17 C 1.53187 * 109.31294 * 61.36552 * 16 15 13 18 18 N 1.46922 * 108.77748 * 305.36554 * 17 16 15 19 19 C 1.36947 * 120.62982 * 233.58909 * 18 17 16 20 20 H 1.08001 * 119.99837 * 27.69125 * 19 18 17 21 21 C 1.38805 * 119.99804 * 207.69737 * 19 18 17 22 22 N 1.31615 * 120.00292 * 17.35292 * 21 19 18 23 23 Si 1.86805 * 120.00012 * 197.35473 * 21 19 18 24 24 H 1.48495 * 109.46914 * 89.99579 * 23 21 19 25 25 H 1.48497 * 109.47109 * 209.99817 * 23 21 19 26 26 H 1.48497 * 109.46870 * 329.99928 * 23 21 19 27 27 C 1.46924 * 118.74277 * 53.60878 * 18 17 16 28 28 C 1.53104 * 109.55670 * 310.27346 * 8 7 6 29 29 C 1.50591 * 129.16707 * 179.86725 * 5 4 3 30 30 H 1.09004 * 109.47331 * 269.87966 * 1 2 3 31 31 H 1.09001 * 109.47263 * 29.88100 * 1 2 3 32 32 H 1.09001 * 109.47260 * 149.88138 * 1 2 3 33 33 H 1.09003 * 109.70102 * 76.78324 * 7 6 2 34 34 H 1.09003 * 109.72359 * 316.21546 * 7 6 2 35 35 H 0.96997 * 119.99643 * 0.02562 * 12 10 8 36 36 H 1.08999 * 109.45613 * 298.70988 * 15 13 12 37 37 H 1.09001 * 109.45771 * 58.66314 * 15 13 12 38 38 H 1.08997 * 109.49495 * 301.41463 * 16 15 13 39 39 H 1.08999 * 109.52222 * 181.33217 * 16 15 13 40 40 H 1.09004 * 109.58899 * 185.57489 * 17 16 15 41 41 H 1.09006 * 109.58894 * 65.15421 * 17 16 15 42 42 H 0.97001 * 120.00435 * 180.02562 * 22 21 19 43 43 H 1.08994 * 109.58861 * 186.60934 * 27 18 17 44 44 H 1.08995 * 109.58630 * 66.17591 * 27 18 17 45 45 H 1.08994 * 109.45451 * 310.01937 * 28 8 7 46 46 H 1.09005 * 109.43381 * 190.07211 * 28 8 7 47 47 H 1.09005 * 109.69284 * 76.87932 * 29 5 4 48 48 H 1.09002 * 109.69286 * 316.34265 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2256 1.0461 0.0000 4 7 3.4671 0.6951 -0.0021 5 6 3.5333 -0.6323 -0.0050 6 6 2.2551 -1.0872 -0.0023 7 6 1.8721 -2.5430 -0.0017 8 6 3.1011 -3.3649 0.4086 9 1 3.3133 -3.1983 1.4646 10 6 2.8262 -4.8284 0.1765 11 8 1.7561 -5.1804 -0.2730 12 7 3.7696 -5.7457 0.4676 13 6 3.5020 -7.1684 0.2426 14 1 2.4529 -7.3786 0.4504 15 6 4.3851 -8.0071 1.1694 16 6 4.0829 -9.4924 0.9583 17 6 4.4032 -9.8737 -0.4903 18 7 3.6676 -8.9746 -1.3898 19 6 2.8595 -9.4795 -2.3733 20 1 2.3973 -10.4476 -2.2485 21 6 2.6345 -8.7470 -3.5308 22 7 3.4368 -7.7527 -3.8467 23 14 1.1930 -9.1726 -4.6400 24 1 -0.0026 -8.4007 -4.2159 25 1 1.5311 -8.8294 -6.0447 26 1 0.9046 -10.6259 -4.5412 27 6 3.8158 -7.5234 -1.2143 28 6 4.3086 -2.9339 -0.4284 29 6 4.7467 -1.5241 -0.0109 30 1 -0.3634 -0.0022 1.0277 31 1 -0.3634 0.8910 -0.5120 32 1 -0.3634 -0.8889 -0.5157 33 1 1.5492 -2.8384 -1.0000 34 1 1.0639 -2.7105 0.7103 35 1 4.6255 -5.4640 0.8269 36 1 5.4340 -7.8143 0.9440 37 1 4.1814 -7.7387 2.2060 38 1 3.0284 -9.6812 1.1596 39 1 4.6950 -10.0884 1.6352 40 1 4.0975 -10.9039 -0.6732 41 1 5.4740 -9.7715 -0.6669 42 1 3.2794 -7.2406 -4.6554 43 1 3.1224 -7.0028 -1.8747 44 1 4.8386 -7.2294 -1.4498 45 1 4.0365 -2.9319 -1.4839 46 1 5.1298 -3.6322 -0.2666 47 1 5.1841 -1.5559 0.9870 48 1 5.4800 -1.1420 -0.7211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008323455.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:48 Heat of formation + Delta-G solvation = 46.069289 kcal Electronic energy + Delta-G solvation = -29513.214529 eV Core-core repulsion = 25604.195834 eV Total energy + Delta-G solvation = -3909.018696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.41790 -41.14770 -39.11883 -37.54992 -35.92354 -35.74765 -34.40840 -32.02246 -31.63479 -31.52453 -30.10904 -28.73426 -27.21669 -25.81332 -24.36470 -23.90150 -23.25691 -22.39841 -21.52340 -21.00419 -20.34184 -18.74131 -18.43895 -17.91381 -17.45339 -17.22542 -16.62740 -16.14100 -15.81600 -15.62021 -15.26100 -14.98858 -14.87755 -14.87733 -14.68832 -14.38162 -14.14216 -14.10571 -13.93562 -13.71087 -13.45045 -13.13037 -13.04480 -12.92199 -12.69543 -12.60966 -12.45025 -12.20836 -12.17890 -12.02515 -11.96266 -11.66835 -11.58698 -11.52094 -11.21481 -10.96335 -10.67009 -10.54470 -10.00947 -9.87950 -8.66574 -7.87804 -5.32953 0.50073 1.40578 1.41509 1.45658 1.45696 1.51865 1.71652 2.24244 2.50103 3.14986 3.27924 3.41724 3.70196 3.73743 3.76582 3.83100 3.92893 4.01777 4.13767 4.19582 4.22947 4.26702 4.35849 4.43060 4.49583 4.53394 4.54270 4.65499 4.68956 4.86012 4.88414 4.90613 4.96475 5.01735 5.08134 5.13036 5.21779 5.24113 5.28706 5.32045 5.39111 5.53458 5.56784 5.58900 5.64499 5.84408 6.38259 6.70829 7.14348 7.41690 7.41768 7.87955 8.35869 9.16359 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.003206 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.900526 B = 8732.784258 C = 9859.057132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.279 5.279 3 N -0.127 5.127 4 N -0.295 5.295 5 C -0.031 4.031 6 C -0.013 4.013 7 C -0.020 4.020 8 C -0.086 4.086 9 H 0.136 0.864 10 C 0.514 3.486 11 O -0.585 6.585 12 N -0.705 5.705 13 C 0.131 3.869 14 H 0.050 0.950 15 C -0.107 4.107 16 C -0.122 4.122 17 C 0.135 3.865 18 N -0.611 5.611 19 C -0.264 4.264 20 H 0.066 0.934 21 C -0.047 4.047 22 N -0.928 5.928 23 Si 0.957 3.043 24 H -0.293 1.293 25 H -0.293 1.293 26 H -0.264 1.264 27 C 0.179 3.821 28 C -0.107 4.107 29 C -0.023 4.023 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.415 0.585 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.022 0.978 42 H 0.247 0.753 43 H 0.044 0.956 44 H 0.001 0.999 45 H 0.054 0.946 46 H 0.104 0.896 47 H 0.111 0.889 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 10.984 14.914 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.072 5.072 3 N -0.104 5.104 4 N -0.159 5.159 5 C -0.173 4.173 6 C -0.148 4.148 7 C -0.060 4.060 8 C -0.108 4.108 9 H 0.154 0.846 10 C 0.301 3.699 11 O -0.465 6.465 12 N -0.357 5.357 13 C 0.025 3.975 14 H 0.069 0.931 15 C -0.145 4.145 16 C -0.162 4.162 17 C 0.010 3.990 18 N -0.335 5.335 19 C -0.394 4.394 20 H 0.084 0.916 21 C -0.243 4.243 22 N -0.574 5.574 23 Si 0.786 3.214 24 H -0.221 1.221 25 H -0.219 1.219 26 H -0.188 1.188 27 C 0.052 3.948 28 C -0.146 4.146 29 C -0.062 4.062 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.252 0.748 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.019 0.981 45 H 0.073 0.927 46 H 0.122 0.878 47 H 0.129 0.871 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.292 12.400 14.459 19.050 hybrid contribution -0.837 -0.962 -1.244 1.782 sum -1.129 11.438 13.214 17.513 Atomic orbital electron populations 1.22722 0.70254 1.07391 1.06955 1.47247 1.10624 1.03935 1.45381 1.78558 0.96361 1.12204 1.23287 1.74718 1.10313 1.13197 1.17637 1.22255 0.96407 0.91000 1.07608 1.21977 0.91265 0.92492 1.09111 1.19859 0.98348 0.84046 1.03746 1.21278 0.96404 0.88707 1.04414 0.84585 1.20979 0.83566 0.88906 0.76450 1.90735 1.27097 1.82670 1.45990 1.45852 1.18394 1.06089 1.65322 1.21466 0.99183 0.79995 0.96875 0.93144 1.21641 0.99393 0.94599 0.98845 1.21896 1.01457 0.95990 0.96819 1.21180 0.94051 0.93641 0.90168 1.44271 1.52327 1.01433 1.35445 1.19485 1.20829 1.03897 0.95189 0.91642 1.25705 1.00861 0.99585 0.98112 1.70157 1.37495 1.24205 1.25512 0.85412 0.79762 0.78402 0.77839 1.22076 1.21909 1.18800 1.20808 0.96970 0.84183 0.92819 1.21639 0.96863 0.96875 0.99175 1.20030 0.91548 0.89947 1.04671 0.86726 0.86715 0.86892 0.90408 0.88275 0.74765 0.90611 0.89466 0.93144 0.88637 0.92958 0.96046 0.94437 0.93775 0.98109 0.92743 0.87800 0.87056 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 11.27 127.77 1.44 2.20 16 2 N -0.28 -6.09 3.73 -356.35 -1.33 -7.42 16 3 N -0.13 -3.51 13.20 37.02 0.49 -3.02 16 4 N -0.30 -8.62 12.40 -48.95 -0.61 -9.22 16 5 C -0.03 -0.76 7.11 41.77 0.30 -0.46 16 6 C -0.01 -0.30 6.77 41.52 0.28 -0.02 16 7 C -0.02 -0.44 4.68 29.94 0.14 -0.30 16 8 C -0.09 -1.72 2.50 -11.36 -0.03 -1.75 16 9 H 0.14 1.83 8.12 -2.39 -0.02 1.81 16 10 C 0.51 15.24 7.12 87.66 0.62 15.87 16 11 O -0.59 -24.00 15.48 -3.05 -0.05 -24.04 16 12 N -0.71 -19.15 4.90 -442.14 -2.17 -21.31 16 13 C 0.13 4.67 2.60 45.07 0.12 4.78 16 14 H 0.05 2.13 7.58 -2.39 -0.02 2.12 16 15 C -0.11 -2.84 5.35 30.62 0.16 -2.67 16 16 C -0.12 -3.58 6.08 30.67 0.19 -3.39 16 17 C 0.13 5.26 6.52 86.36 0.56 5.83 16 18 N -0.61 -30.61 2.99 -699.10 -2.09 -32.71 16 19 C -0.26 -14.85 9.59 84.03 0.81 -14.04 16 20 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 21 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 22 N -0.93 -56.32 11.19 21.65 0.24 -56.08 16 23 Si 0.96 46.76 29.59 68.60 2.03 48.79 16 24 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 27 C 0.18 8.54 4.88 86.37 0.42 8.96 16 28 C -0.11 -1.99 5.17 30.77 0.16 -1.83 16 29 C -0.02 -0.40 6.30 29.96 0.19 -0.21 16 30 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.04 7.96 -2.39 -0.02 1.03 16 33 H 0.08 2.05 7.78 -2.39 -0.02 2.03 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 35 H 0.42 7.60 7.93 -92.71 -0.74 6.86 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.05 2.03 7.93 -2.38 -0.02 2.01 16 41 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 43 H 0.04 2.55 6.04 -2.39 -0.01 2.54 16 44 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.05 1.30 8.12 -2.39 -0.02 1.28 16 46 H 0.10 1.54 7.30 -2.38 -0.02 1.52 16 47 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 48 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -82.36 380.18 2.53 -79.83 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.23 Total: 14.50 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.78 Total: 10.69 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -5.47 Total: -129.76 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -82.36 2.53 -79.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008323455.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.900 kcal (2) G-P(sol) polarization free energy of solvation -82.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds