Wall clock time and date at job start Tue Mar 31 2020 18:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47446 * 110.99737 * 2 1 4 4 C 1.54318 * 107.23303 * 236.74038 * 3 2 1 5 5 C 1.55138 * 103.01792 * 337.71992 * 4 3 2 6 6 C 1.47840 * 110.99988 * 239.15824 * 2 1 3 7 7 H 1.08993 * 110.37873 * 27.42361 * 6 2 1 8 8 C 1.50697 * 110.37378 * 265.18718 * 6 2 1 9 9 C 1.35370 * 126.38423 * 126.16656 * 8 6 2 10 10 C 1.41501 * 105.50137 * 179.90194 * 9 8 6 11 11 C 1.47710 * 126.51321 * 180.10004 * 10 9 8 12 12 O 1.21574 * 120.00533 * 0.29436 * 11 10 9 13 13 N 1.34783 * 119.99994 * 180.28898 * 11 10 9 14 14 C 1.47027 * 125.64378 * 359.69949 * 13 11 10 15 15 C 1.54339 * 107.26403 * 178.84522 * 14 13 11 16 16 C 1.55161 * 103.01956 * 338.14007 * 15 14 13 17 17 H 1.09003 * 111.03404 * 277.21784 * 16 15 14 18 18 N 1.46497 * 111.00263 * 153.38222 * 16 15 14 19 19 C 1.36936 * 119.99627 * 161.35085 * 18 16 15 20 20 H 1.07992 * 120.00618 * 359.97438 * 19 18 16 21 21 C 1.38820 * 119.99748 * 180.02562 * 19 18 16 22 22 N 1.31616 * 119.99776 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99988 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47522 * 89.99374 * 23 21 19 25 25 H 1.48499 * 109.46767 * 209.99911 * 23 21 19 26 26 H 1.48498 * 109.46989 * 329.99455 * 23 21 19 27 27 C 1.47423 * 125.65301 * 180.02562 * 13 11 10 28 28 N 1.31801 * 106.96633 * 0.36688 * 10 9 8 29 29 N 1.28462 * 110.07406 * 359.77063 * 28 10 9 30 30 H 0.96998 * 124.89143 * 180.02562 * 29 28 10 31 31 H 1.08997 * 109.47423 * 60.12781 * 1 2 3 32 32 H 1.09006 * 109.47254 * 180.12862 * 1 2 3 33 33 H 1.09000 * 109.47337 * 300.12676 * 1 2 3 34 34 H 1.08996 * 109.88895 * 356.15286 * 3 2 1 35 35 H 1.09001 * 109.88694 * 117.33682 * 3 2 1 36 36 H 1.09003 * 110.70170 * 96.09788 * 4 3 2 37 37 H 1.09002 * 110.70518 * 219.33180 * 4 3 2 38 38 H 1.09006 * 110.98929 * 277.55627 * 5 4 3 39 39 H 1.09000 * 111.02473 * 153.76108 * 5 4 3 40 40 H 1.08005 * 127.24640 * 0.02562 * 9 8 6 41 41 H 1.08998 * 109.88143 * 298.38870 * 14 13 11 42 42 H 1.08997 * 109.88543 * 59.55473 * 14 13 11 43 43 H 1.08996 * 110.84801 * 219.67465 * 15 14 13 44 44 H 1.08998 * 110.51194 * 96.44801 * 15 14 13 45 45 H 0.96998 * 120.00439 * 341.34162 * 18 16 15 46 46 H 0.97001 * 120.00156 * 180.02562 * 22 21 19 47 47 H 1.08998 * 110.36235 * 322.93552 * 27 13 11 48 48 H 1.08998 * 110.36448 * 85.25453 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 -1.2325 5 6 3.3046 0.0445 -1.5438 6 6 1.9988 -0.7076 -1.1850 7 1 1.2881 -0.6518 -2.0095 8 6 2.2974 -2.1456 -0.8474 9 6 1.8366 -3.2367 -1.5028 10 6 2.3875 -4.3478 -0.8214 11 6 2.1837 -5.7723 -1.1545 12 8 1.4867 -6.0817 -2.1013 13 7 2.7706 -6.7294 -0.4087 14 6 3.6393 -6.4969 0.7545 15 6 4.0514 -7.8798 1.3021 16 6 2.9421 -8.8170 0.7555 17 1 2.0572 -8.7882 1.3913 18 7 3.4372 -10.1881 0.6111 19 6 2.5525 -11.2291 0.5168 20 1 1.4899 -11.0394 0.5494 21 6 3.0217 -12.5285 0.3805 22 7 4.3167 -12.7598 0.3414 23 14 1.8148 -13.9485 0.2513 24 1 1.4790 -14.1844 -1.1758 25 1 2.4285 -15.1733 0.8245 26 1 0.5777 -13.6166 1.0026 27 6 2.6532 -8.1825 -0.6281 28 7 3.1122 -3.8701 0.1704 29 7 3.0698 -2.5861 0.1689 30 1 3.5271 -2.0151 0.8058 31 1 -0.3634 0.5118 -0.8911 32 1 -0.3634 -1.0277 0.0023 33 1 -0.3634 0.5158 0.8888 34 1 1.1754 2.0892 -0.0688 35 1 2.5696 1.5540 0.9105 36 1 2.3743 1.9547 -2.0694 37 1 3.7999 2.1035 -0.9905 38 1 4.1302 -0.2832 -0.9119 39 1 3.5498 -0.0801 -2.5985 40 1 1.1871 -3.2552 -2.3655 41 1 4.5242 -5.9378 0.4503 42 1 3.0942 -5.9446 1.5199 43 1 4.0541 -7.8803 2.3920 44 1 5.0274 -8.1695 0.9127 45 1 4.3916 -10.3587 0.5821 46 1 4.6446 -13.6677 0.2458 47 1 1.6460 -8.4360 -0.9587 48 1 3.3888 -8.5163 -1.3599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018877412.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:50 Heat of formation + Delta-G solvation = 66.933032 kcal Electronic energy + Delta-G solvation = -28305.208649 eV Core-core repulsion = 24397.094673 eV Total energy + Delta-G solvation = -3908.113976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.80453 -39.58465 -39.22243 -37.08089 -34.07382 -32.69968 -32.24046 -31.93535 -31.23774 -29.49423 -28.36734 -27.41810 -26.10430 -24.73162 -23.26409 -22.37002 -21.83308 -21.64117 -21.05765 -20.00141 -18.65556 -17.89035 -17.25122 -16.75801 -16.59248 -16.03054 -15.56695 -15.41359 -14.99923 -14.56239 -14.36688 -14.21564 -13.85041 -13.82836 -13.62435 -13.32715 -13.20544 -13.07698 -12.73559 -12.31459 -12.18282 -12.11063 -12.04607 -11.86505 -11.70511 -11.47419 -11.32552 -11.01141 -10.88739 -10.73161 -10.61066 -10.23398 -9.97225 -9.84021 -9.68937 -9.40873 -9.14091 -8.99823 -8.95494 -8.19862 -7.01953 -5.78687 -3.08915 1.61957 1.96166 2.74753 3.28766 3.43638 3.46019 3.51269 3.52508 3.62378 3.98837 4.06692 4.35392 4.39558 4.52393 4.59713 4.70027 4.82208 4.89173 4.97477 5.04317 5.14741 5.15535 5.26389 5.30822 5.40707 5.41072 5.45235 5.47706 5.51688 5.59882 5.68004 5.69886 5.84317 5.95748 6.12866 6.23152 6.25120 6.33581 6.36941 6.43895 6.51176 6.64460 6.71023 6.89852 6.99214 7.71528 7.78156 7.90931 8.39016 8.47709 9.51119 10.04962 10.40156 11.43475 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032721 B = 0.002018 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.516968 B =13875.169716 C =14127.923347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.535 5.535 3 C 0.040 3.960 4 C -0.143 4.143 5 C -0.123 4.123 6 C 0.138 3.862 7 H 0.085 0.915 8 C 0.032 3.968 9 C -0.176 4.176 10 C -0.002 4.002 11 C 0.608 3.392 12 O -0.541 6.541 13 N -0.600 5.600 14 C 0.116 3.884 15 C -0.142 4.142 16 C 0.172 3.828 17 H 0.064 0.936 18 N -0.712 5.712 19 C -0.245 4.245 20 H 0.073 0.927 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.083 3.917 28 N -0.250 5.250 29 N -0.367 5.367 30 H 0.444 0.556 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.159 0.841 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.387 0.613 46 H 0.256 0.744 47 H 0.072 0.928 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 33.238 -0.145 33.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.087 4.087 4 C -0.181 4.181 5 C -0.162 4.162 6 C 0.029 3.971 7 H 0.103 0.897 8 C -0.095 4.095 9 C -0.205 4.205 10 C -0.162 4.162 11 C 0.394 3.606 12 O -0.417 6.417 13 N -0.333 5.333 14 C -0.007 4.007 15 C -0.181 4.181 16 C 0.059 3.941 17 H 0.082 0.918 18 N -0.352 5.352 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.042 4.042 28 N -0.087 5.087 29 N -0.080 5.080 30 H 0.289 0.711 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.177 0.823 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.221 0.779 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.529 32.327 0.647 32.370 hybrid contribution -0.845 0.149 -1.137 1.424 sum -2.373 32.476 -0.490 32.566 Atomic orbital electron populations 1.22557 0.86639 1.02790 1.00841 1.63377 1.08889 1.14191 1.39478 1.22870 0.98211 0.88921 0.98715 1.22812 1.00245 0.96866 0.98179 1.22779 0.96461 0.94274 1.02664 1.21029 0.96896 0.87209 0.91987 0.89719 1.20921 0.99637 0.95555 0.93364 1.21465 1.05741 0.89355 1.03911 1.21905 1.02503 0.95124 0.96696 1.16543 0.79803 0.82187 0.82020 1.90785 1.39921 1.81940 1.29063 1.48368 1.47648 1.07395 1.29895 1.21991 0.93748 0.97475 0.87516 1.22945 1.00365 0.93759 1.00992 1.21323 0.95207 0.85378 0.92144 0.91774 1.42311 1.06644 0.99324 1.86936 1.19271 0.89592 0.86042 1.42725 0.90916 1.24770 0.95950 0.97472 1.02480 1.69661 1.11337 1.20073 1.56798 0.86165 0.80040 0.82101 0.77734 1.21590 1.21772 1.20659 1.23447 1.02348 0.76617 1.01787 1.73738 1.20959 0.92679 1.21309 1.43204 1.36656 1.04338 1.23847 0.71135 0.95036 0.90906 0.91064 0.92210 0.90167 0.91046 0.90218 0.90626 0.89782 0.82341 0.91544 0.91314 0.90275 0.90601 0.77851 0.93414 0.90946 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.12 60.06 0.55 0.67 16 2 N -0.53 -3.34 5.08 -232.99 -1.18 -4.52 16 3 C 0.04 0.18 6.90 -2.83 -0.02 0.16 16 4 C -0.14 -0.53 6.94 -24.91 -0.17 -0.71 16 5 C -0.12 -0.62 6.48 -24.59 -0.16 -0.78 16 6 C 0.14 0.91 2.92 -67.34 -0.20 0.72 16 7 H 0.08 0.54 7.77 -51.93 -0.40 0.13 16 8 C 0.03 0.30 6.13 -82.21 -0.50 -0.20 16 9 C -0.18 -2.18 10.72 -39.36 -0.42 -2.60 16 10 C 0.00 -0.03 6.98 -82.77 -0.58 -0.60 16 11 C 0.61 11.14 7.86 -12.39 -0.10 11.04 16 12 O -0.54 -11.49 17.18 5.30 0.09 -11.40 16 13 N -0.60 -10.69 3.33 -171.66 -0.57 -11.26 16 14 C 0.12 1.74 5.55 -3.05 -0.02 1.73 16 15 C -0.14 -2.29 6.57 -24.89 -0.16 -2.46 16 16 C 0.17 3.46 3.69 -65.77 -0.24 3.22 16 17 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 18 N -0.71 -17.71 5.28 -51.34 -0.27 -17.98 16 19 C -0.25 -6.80 9.98 -15.06 -0.15 -6.95 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 23 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 C 0.08 1.67 6.60 -2.52 -0.02 1.65 16 28 N -0.25 -3.21 9.76 33.42 0.33 -2.89 16 29 N -0.37 -3.51 6.83 33.50 0.23 -3.28 16 30 H 0.44 3.02 8.96 -190.45 -1.71 1.31 16 31 H 0.03 0.16 8.10 -51.93 -0.42 -0.26 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.23 7.58 -51.93 -0.39 -0.16 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.39 8.05 -51.93 -0.42 -0.03 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 41 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 42 H 0.07 0.97 7.64 -51.93 -0.40 0.58 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 45 H 0.39 10.11 7.71 -40.82 -0.31 9.79 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.07 1.55 8.04 -51.93 -0.42 1.14 16 48 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -33.34 390.43 -11.15 -44.48 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -9.06 Total: 6.19 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.29 Total: 4.50 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -0.75 Total: -67.16 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.34 -11.15 -44.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018877412.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.416 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds