Wall clock time and date at job start Tue Mar 31 2020 18:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47005 * 2 1 4 4 N 1.28513 * 124.44402 * 269.97664 * 3 2 1 5 5 C 1.31134 * 109.05831 * 179.74100 * 4 3 2 6 6 C 1.50699 * 127.11429 * 180.29398 * 5 4 3 7 7 C 1.40921 * 105.77512 * 0.42732 * 5 4 3 8 8 C 1.47805 * 127.23738 * 179.84634 * 7 5 4 9 9 O 1.21554 * 119.99804 * 359.70441 * 8 7 5 10 10 N 1.34780 * 119.99991 * 179.71285 * 8 7 5 11 11 C 1.46501 * 119.99922 * 179.97438 * 10 8 7 12 12 C 1.53418 * 109.41283 * 120.20642 * 11 10 8 13 13 C 1.53697 * 108.94112 * 66.14802 * 12 11 10 14 14 H 1.09003 * 112.58469 * 187.92716 * 13 12 11 15 15 C 1.54608 * 107.83050 * 312.22493 * 13 12 11 16 16 C 1.54304 * 104.75423 * 88.65896 * 15 13 12 17 17 C 1.54616 * 104.75028 * 0.02562 * 16 15 13 18 18 H 1.09000 * 112.69308 * 147.06598 * 17 16 15 19 19 C 1.53138 * 109.43512 * 240.24350 * 11 10 8 20 20 N 1.48290 * 107.27790 * 64.00049 * 13 12 11 21 21 C 1.36939 * 128.21045 * 107.39787 * 20 13 12 22 22 H 1.07999 * 120.00102 * 163.32955 * 21 20 13 23 23 C 1.38811 * 119.99906 * 343.33246 * 21 20 13 24 24 N 1.31621 * 119.99829 * 350.92582 * 23 21 20 25 25 Si 1.86803 * 119.99959 * 170.93163 * 23 21 20 26 26 H 1.48499 * 109.46985 * 59.99570 * 25 23 21 27 27 H 1.48499 * 109.47257 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46670 * 299.99529 * 25 23 21 29 29 N 1.28595 * 124.44034 * 90.00218 * 3 2 1 30 30 H 1.09001 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47428 * 299.99806 * 1 2 3 32 32 H 1.09000 * 109.47466 * 59.99734 * 1 2 3 33 33 H 1.09005 * 109.46807 * 239.99816 * 2 1 3 34 34 H 1.09001 * 109.46944 * 120.00278 * 2 1 3 35 35 H 1.08999 * 109.47298 * 270.16296 * 6 5 4 36 36 H 1.09005 * 109.46993 * 30.16256 * 6 5 4 37 37 H 1.09004 * 109.47423 * 150.16140 * 6 5 4 38 38 H 0.96995 * 119.99723 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.39968 * 0.13651 * 11 10 8 40 40 H 1.08999 * 109.54080 * 306.30005 * 12 11 10 41 41 H 1.09003 * 109.53624 * 185.98543 * 12 11 10 42 42 H 1.09006 * 110.38475 * 207.48423 * 15 13 12 43 43 H 1.09006 * 110.37823 * 329.72776 * 15 13 12 44 44 H 1.08995 * 110.39038 * 241.18959 * 16 15 13 45 45 H 1.08999 * 110.38283 * 118.82221 * 16 15 13 46 46 H 1.08998 * 109.57226 * 174.00890 * 19 11 10 47 47 H 1.08999 * 109.57284 * 53.76611 * 19 11 10 48 48 H 0.97004 * 119.99299 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 -1.0598 5 6 2.6770 3.2603 -0.7119 6 6 3.0680 4.3901 -1.6293 7 6 2.6858 3.2674 0.6973 8 6 3.0802 4.3825 1.5836 9 8 3.4527 5.4362 1.1056 10 7 3.0269 4.2310 2.9218 11 6 3.4183 5.3360 3.8003 12 6 2.2302 5.7264 4.6890 13 6 1.9177 4.5631 5.6436 14 1 0.9985 4.7200 6.2079 15 6 1.8750 3.2632 4.8076 16 6 3.3309 2.7519 4.8013 17 6 4.1165 3.7907 5.6347 18 1 4.9413 3.3461 6.1916 19 6 4.5930 4.8968 4.6791 20 7 3.0957 4.3902 6.5276 21 6 3.2132 4.7089 7.8542 22 1 4.0189 4.2922 8.4404 23 6 2.2967 5.5675 8.4455 24 7 1.4255 6.2144 7.7006 25 14 2.3000 5.8050 10.2984 26 1 3.6185 6.3372 10.7268 27 1 1.2325 6.7657 10.6762 28 1 2.0520 4.5014 10.9649 29 7 2.2608 2.0669 1.0605 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.1324 4.3233 -1.8549 36 1 2.4956 4.3217 -2.5544 37 1 2.8590 5.3426 -1.1423 38 1 2.7293 3.3902 3.3031 39 1 3.7183 6.1912 3.1947 40 1 1.3600 5.9308 4.0652 41 1 2.4839 6.6150 5.2671 42 1 1.2176 2.5313 5.2770 43 1 1.5411 3.4758 3.7920 44 1 3.7155 2.7134 3.7822 45 1 3.3900 1.7685 5.2677 46 1 4.9548 5.7473 5.2569 47 1 5.3967 4.5145 4.0500 48 1 0.7853 6.8147 8.1139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021474964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:26 Heat of formation + Delta-G solvation = 169.067243 kcal Electronic energy + Delta-G solvation = -30476.828398 eV Core-core repulsion = 26573.143294 eV Total energy + Delta-G solvation = -3903.685104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.70905 -40.94121 -38.24389 -35.26584 -34.23934 -33.06863 -32.08345 -31.66313 -30.97365 -30.23088 -29.03694 -28.03910 -25.50586 -24.34619 -23.27576 -22.85558 -21.45524 -21.11850 -20.28738 -19.56169 -19.32596 -17.79451 -17.25006 -16.74997 -16.59002 -15.28719 -14.86854 -14.74284 -14.39723 -14.23353 -13.98394 -13.75577 -13.47752 -13.11751 -12.90364 -12.89421 -12.74419 -12.70553 -12.46970 -12.14350 -12.07576 -11.80203 -11.63239 -11.58714 -11.43120 -11.03831 -10.93029 -10.89325 -10.62938 -10.34704 -10.33562 -10.28320 -10.05146 -9.81870 -9.53910 -9.45216 -9.34455 -9.26082 -8.61772 -8.15960 -6.81467 -5.78540 -3.13684 1.34828 1.89437 2.01419 3.38480 3.44012 3.44365 3.47957 3.49926 3.89771 4.44865 4.45730 4.50471 4.71426 4.73216 5.02073 5.18198 5.20945 5.27615 5.34856 5.44362 5.47757 5.61002 5.62746 5.65398 5.68593 5.73128 5.83060 5.89060 5.90324 6.02635 6.06379 6.20355 6.24361 6.36819 6.47896 6.57166 6.57615 6.60033 6.66147 6.81806 6.91787 7.03131 7.14248 7.52800 7.54255 7.73193 7.86602 8.14292 8.21586 8.52567 9.11832 9.74052 10.53334 11.34302 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.003318 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.546647 B = 8437.753896 C = 9174.125439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.144 5.144 4 N -0.296 5.296 5 C 0.057 3.943 6 C -0.067 4.067 7 C -0.041 4.041 8 C 0.588 3.412 9 O -0.542 6.542 10 N -0.719 5.719 11 C 0.140 3.860 12 C -0.123 4.123 13 C 0.184 3.816 14 H 0.108 0.892 15 C -0.172 4.172 16 C -0.159 4.159 17 C 0.149 3.851 18 H 0.069 0.931 19 C -0.138 4.138 20 N -0.583 5.583 21 C -0.226 4.226 22 H 0.074 0.926 23 C -0.002 4.002 24 N -0.910 5.910 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 N -0.250 5.250 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.433 0.567 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.048 0.952 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -11.195 -16.237 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.046 5.046 4 N -0.137 5.137 5 C -0.106 4.106 6 C -0.126 4.126 7 C -0.205 4.205 8 C 0.371 3.629 9 O -0.418 6.418 10 N -0.391 5.391 11 C 0.037 3.963 12 C -0.163 4.163 13 C 0.077 3.923 14 H 0.126 0.874 15 C -0.211 4.211 16 C -0.199 4.199 17 C 0.041 3.959 18 H 0.087 0.913 19 C -0.178 4.178 20 N -0.304 5.304 21 C -0.354 4.354 22 H 0.092 0.908 23 C -0.200 4.200 24 N -0.556 5.556 25 Si 0.740 3.260 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.213 1.213 29 N -0.098 5.098 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.295 0.705 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.066 0.934 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.405 -11.656 -16.259 20.009 hybrid contribution 0.098 0.487 1.064 1.174 sum -0.307 -11.168 -15.195 18.860 Atomic orbital electron populations 1.22199 0.92913 1.04000 1.03931 1.22071 0.96235 0.74198 1.06003 1.48079 1.44026 1.13337 0.99195 1.73895 1.19122 1.05254 1.15407 1.23265 1.00881 0.93694 0.92807 1.20214 1.01790 0.93890 0.96663 1.23163 1.09041 0.93757 0.94507 1.16951 0.78223 0.84752 0.83022 1.90719 1.48447 1.26752 1.75902 1.49076 1.64938 1.20488 1.04622 1.21245 0.95959 0.88763 0.90346 1.22422 0.95017 1.02018 0.96872 1.21429 0.93823 0.88340 0.88741 0.87402 1.23401 0.95791 1.01320 1.00618 1.23234 0.96633 0.99932 1.00079 1.21555 0.92352 0.91581 0.90437 0.91328 1.22516 0.96109 1.01266 0.97939 1.45145 1.07524 1.71863 1.05838 1.18923 1.12026 1.21595 0.82890 0.90823 1.24851 0.99689 0.97436 0.97991 1.69865 1.22040 1.30345 1.33374 0.86248 0.77165 0.77408 0.85180 1.21125 1.21658 1.21267 1.74370 1.14995 1.04618 1.15819 0.89462 0.91092 0.91392 0.87235 0.87063 0.90233 0.90917 0.88486 0.70516 0.89567 0.93804 0.89313 0.92293 0.90513 0.90356 0.92193 0.90624 0.93364 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.16 0.38 -0.70 16 2 C 0.13 0.96 7.24 -4.04 -0.03 0.93 16 3 N -0.14 -1.75 3.94 -10.61 -0.04 -1.79 16 4 N -0.30 -3.91 12.01 33.92 0.41 -3.50 16 5 C 0.06 0.81 7.39 -81.88 -0.61 0.21 16 6 C -0.07 -0.77 9.99 36.01 0.36 -0.41 16 7 C -0.04 -0.65 7.21 -82.68 -0.60 -1.25 16 8 C 0.59 10.31 7.83 -12.35 -0.10 10.21 16 9 O -0.54 -10.40 14.53 5.32 0.08 -10.32 16 10 N -0.72 -12.52 2.78 -54.48 -0.15 -12.67 16 11 C 0.14 2.68 3.17 -67.64 -0.21 2.46 16 12 C -0.12 -2.63 5.39 -26.15 -0.14 -2.77 16 13 C 0.18 4.12 3.12 -65.74 -0.20 3.91 16 14 H 0.11 2.78 6.45 -51.93 -0.34 2.44 16 15 C -0.17 -3.19 5.75 -25.20 -0.14 -3.34 16 16 C -0.16 -2.78 5.76 -25.20 -0.15 -2.92 16 17 C 0.15 2.97 4.32 -65.72 -0.28 2.68 16 18 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 19 C -0.14 -2.60 5.48 -26.27 -0.14 -2.75 16 20 N -0.58 -13.90 2.81 -152.75 -0.43 -14.33 16 21 C -0.23 -5.98 10.37 -15.06 -0.16 -6.13 16 22 H 0.07 1.90 7.84 -52.49 -0.41 1.49 16 23 C 0.00 -0.06 5.42 -17.43 -0.09 -0.16 16 24 N -0.91 -25.15 10.54 55.49 0.58 -24.56 16 25 Si 0.91 21.35 29.56 -169.99 -5.03 16.32 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 N -0.25 -3.59 11.84 33.42 0.40 -3.20 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.23 6.77 -51.93 -0.35 0.87 16 38 H 0.43 7.24 1.67 -64.29 -0.11 7.14 16 39 H 0.09 1.69 6.89 -51.93 -0.36 1.34 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 2.15 7.89 -51.93 -0.41 1.74 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.36 5.28 -51.93 -0.27 1.09 16 44 H 0.08 1.29 5.26 -51.93 -0.27 1.02 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -30.74 370.25 -7.87 -38.61 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.15 Total: 9.85 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.12 Total: 0.00 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.76 Total: -60.04 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.74 -7.87 -38.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021474964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.679 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds