Wall clock time and date at job start Tue Mar 31 2020 18:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47290 * 2 1 4 4 N 1.28520 * 124.43927 * 270.02759 * 3 2 1 5 5 C 1.31137 * 109.06002 * 179.69087 * 4 3 2 6 6 C 1.40932 * 105.77139 * 0.43047 * 5 4 3 7 7 C 1.47800 * 127.23444 * 179.83979 * 6 5 4 8 8 O 1.21555 * 120.00136 * 6.23986 * 7 6 5 9 9 N 1.34769 * 119.99875 * 186.23667 * 7 6 5 10 10 C 1.47271 * 120.93727 * 6.38053 * 9 7 6 11 11 C 1.53119 * 109.20532 * 126.72138 * 10 9 7 12 12 C 1.53147 * 109.61680 * 53.92734 * 11 10 9 13 13 C 1.52817 * 109.26127 * 299.14923 * 12 11 10 14 14 H 1.08997 * 109.47570 * 301.99769 * 13 12 11 15 15 C 1.53070 * 110.33974 * 181.45801 * 13 12 11 16 16 N 1.47060 * 108.36824 * 184.58209 * 15 13 12 17 17 C 1.36941 * 120.47439 * 233.27142 * 16 15 13 18 18 H 1.07995 * 120.00234 * 144.23507 * 17 16 15 19 19 C 1.38814 * 119.99642 * 324.24335 * 17 16 15 20 20 N 1.31623 * 119.99742 * 169.30818 * 19 17 16 21 21 Si 1.86800 * 120.00095 * 349.30327 * 19 17 16 22 22 H 1.48504 * 109.47052 * 92.24456 * 21 19 17 23 23 H 1.48497 * 109.47335 * 212.24579 * 21 19 17 24 24 H 1.48503 * 109.47134 * 332.24767 * 21 19 17 25 25 C 1.46862 * 119.06042 * 53.29718 * 16 15 13 26 26 C 1.53312 * 109.10068 * 307.34587 * 25 16 15 27 27 C 1.46714 * 120.84605 * 186.19509 * 9 7 6 28 28 H 1.09006 * 109.53142 * 114.55000 * 27 9 7 29 29 N 1.28580 * 124.44917 * 89.99685 * 3 2 1 30 30 H 1.08992 * 109.47366 * 60.00174 * 1 2 3 31 31 H 1.09002 * 109.47227 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46806 * 300.00010 * 1 2 3 33 33 H 1.09002 * 109.47047 * 239.99258 * 2 1 3 34 34 H 1.09008 * 109.47100 * 119.99885 * 2 1 3 35 35 H 1.07995 * 127.11547 * 180.28284 * 5 4 3 36 36 H 1.09005 * 109.52190 * 6.76514 * 10 9 7 37 37 H 1.09002 * 109.47615 * 246.64950 * 10 9 7 38 38 H 1.09002 * 109.45234 * 293.88052 * 11 10 9 39 39 H 1.09003 * 109.44993 * 173.96760 * 11 10 9 40 40 H 1.08999 * 109.50652 * 179.21271 * 12 11 10 41 41 H 1.08994 * 109.50907 * 59.08705 * 12 11 10 42 42 H 1.09005 * 109.68857 * 64.85195 * 15 13 12 43 43 H 1.08996 * 109.69314 * 304.31556 * 15 13 12 44 44 H 0.97000 * 119.99838 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.53485 * 67.23357 * 25 16 15 46 46 H 1.09005 * 109.53758 * 187.38537 * 25 16 15 47 47 H 1.09002 * 109.56181 * 173.94462 * 26 25 16 48 48 H 1.08999 * 109.56038 * 294.26709 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2602 2.0666 -1.0599 5 6 2.6756 3.2608 -0.7122 6 6 2.6849 3.2678 0.6971 7 6 3.0791 4.3831 1.5833 8 8 3.3365 5.4730 1.1108 9 7 3.1530 4.1915 2.9153 10 6 2.9825 2.8497 3.4978 11 6 4.1803 2.5357 4.3985 12 6 4.3565 3.6553 5.4285 13 6 4.6195 4.9730 4.7008 14 1 5.5052 4.8713 4.0736 15 6 4.8356 6.1039 5.7094 16 7 4.9741 7.3662 4.9676 17 6 6.0576 8.1778 5.1742 18 1 6.4862 8.7269 4.3489 19 6 6.6051 8.2946 6.4444 20 7 7.7623 8.8998 6.6092 21 14 5.6996 7.5930 7.9200 22 1 6.1626 6.2043 8.1704 23 1 5.9766 8.4302 9.1147 24 1 4.2398 7.5865 7.6477 25 6 3.9337 7.7444 4.0026 26 6 3.7096 6.5840 3.0260 27 6 3.4098 5.3146 3.8237 28 1 2.5370 5.4791 4.4556 29 7 2.2608 2.0669 1.0603 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5140 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 2.9551 4.0707 -1.3697 36 1 2.9233 2.1106 2.6989 37 1 2.0661 2.8233 4.0875 38 1 5.0813 2.4572 3.7901 39 1 4.0083 1.5913 4.9150 40 1 5.2009 3.4231 6.0775 41 1 3.4503 3.7448 6.0275 42 1 5.7419 5.9147 6.2848 43 1 3.9799 6.1650 6.3817 44 1 8.1451 8.9811 7.4967 45 1 3.0057 7.9591 4.5326 46 1 4.2519 8.6295 3.4517 47 1 2.8664 6.8131 2.3743 48 1 4.6067 6.4342 2.4253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021572665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:55 Heat of formation + Delta-G solvation = 100.003520 kcal Electronic energy + Delta-G solvation = -30208.525213 eV Core-core repulsion = 26301.845281 eV Total energy + Delta-G solvation = -3906.679932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.73670 -41.71010 -39.26732 -37.50007 -35.84086 -34.68346 -34.32664 -33.62004 -32.38142 -31.41006 -31.03033 -27.34977 -26.98006 -25.53219 -24.89119 -24.18217 -23.71207 -22.51943 -21.72970 -21.25067 -20.44671 -18.84070 -18.44688 -17.80500 -17.70734 -17.37372 -16.69219 -16.48214 -16.01119 -15.84317 -15.56229 -15.37981 -15.25619 -14.94603 -14.89032 -14.41963 -14.05760 -14.02685 -13.87070 -13.65416 -13.47322 -13.11479 -13.04641 -12.95899 -12.83283 -12.54495 -12.49258 -12.28937 -12.20249 -11.90473 -11.79477 -11.64771 -11.58433 -11.45281 -11.25136 -11.01728 -10.90725 -10.47970 -10.40470 -9.56867 -8.76166 -8.16315 -5.60924 0.19098 0.87800 1.17569 1.30394 1.41480 1.51828 1.87909 2.15081 2.42060 2.82505 3.09433 3.30332 3.50390 3.75144 3.81088 3.90248 3.94348 3.95778 4.04855 4.08991 4.22866 4.27158 4.29205 4.41252 4.48530 4.55063 4.59590 4.64044 4.74871 4.76157 4.77523 4.82722 4.83638 4.88433 4.97555 5.03624 5.07111 5.14231 5.18777 5.19508 5.30246 5.40580 5.50386 5.61183 5.74323 5.92179 6.14289 6.34614 6.93587 6.96280 7.13355 7.59666 8.03016 9.03687 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024456 B = 0.003165 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.627738 B = 8844.306711 C = 9551.789419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.132 5.132 4 N -0.295 5.295 5 C 0.026 3.974 6 C -0.061 4.061 7 C 0.598 3.402 8 O -0.549 6.549 9 N -0.592 5.592 10 C 0.088 3.912 11 C -0.123 4.123 12 C -0.115 4.115 13 C -0.105 4.105 14 H 0.046 0.954 15 C 0.131 3.869 16 N -0.622 5.622 17 C -0.254 4.254 18 H 0.037 0.963 19 C -0.035 4.035 20 N -0.965 5.965 21 Si 0.959 3.041 22 H -0.269 1.269 23 H -0.311 1.311 24 H -0.249 1.249 25 C 0.140 3.860 26 C -0.102 4.102 27 C 0.164 3.836 28 H 0.085 0.915 29 N -0.243 5.243 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.057 0.943 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.216 0.784 36 H 0.126 0.874 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.263 0.737 45 H 0.038 0.962 46 H 0.049 0.951 47 H 0.083 0.917 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.083 -25.672 -10.424 33.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.037 5.037 4 N -0.135 5.135 5 C -0.156 4.156 6 C -0.221 4.221 7 C 0.384 3.616 8 O -0.426 6.426 9 N -0.323 5.323 10 C -0.034 4.034 11 C -0.161 4.161 12 C -0.153 4.153 13 C -0.126 4.126 14 H 0.065 0.935 15 C 0.006 3.994 16 N -0.347 5.347 17 C -0.384 4.384 18 H 0.055 0.945 19 C -0.230 4.230 20 N -0.610 5.610 21 Si 0.787 3.213 22 H -0.195 1.195 23 H -0.240 1.240 24 H -0.173 1.173 25 C 0.015 3.985 26 C -0.141 4.141 27 C 0.061 3.939 28 H 0.103 0.897 29 N -0.093 5.093 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.076 0.924 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.233 0.767 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.101 0.899 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.306 -26.329 -10.604 33.775 hybrid contribution 0.880 1.462 0.624 1.817 sum -17.425 -24.867 -9.980 31.962 Atomic orbital electron populations 1.22170 0.92048 1.05547 1.02599 1.22678 0.96878 0.72159 1.08290 1.49018 1.41589 1.14424 0.98695 1.74013 1.18002 1.05366 1.16109 1.25058 1.01299 0.95735 0.93532 1.22980 1.10443 0.93676 0.95013 1.17101 0.77257 0.85639 0.81570 1.90868 1.50994 1.25125 1.75654 1.48126 1.69066 1.10383 1.04727 1.22612 0.98730 0.82589 0.99419 1.21867 0.97901 0.99272 0.97076 1.21574 1.02847 0.92843 0.98033 1.21908 0.97357 0.96039 0.97333 0.93499 1.21472 0.99058 0.85067 0.93782 1.44473 1.22779 1.19499 1.47962 1.18780 1.05084 1.21575 0.92951 0.94475 1.26230 0.97538 0.98689 1.00528 1.69932 1.19260 1.48517 1.23311 0.85722 0.80435 0.77261 0.77926 1.19499 1.23964 1.17270 1.21273 0.90555 0.96298 0.90407 1.22246 1.01935 0.93750 0.96196 1.21121 0.97178 0.85365 0.90244 0.89731 1.74168 1.15597 1.04138 1.15384 0.92636 0.86538 0.92389 0.85178 0.84791 0.76693 0.85681 0.89717 0.93125 0.87415 0.91505 0.89995 0.93085 0.93788 0.92855 0.94378 0.93281 0.89856 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.24 71.98 0.74 -0.05 16 2 C 0.12 0.71 7.24 86.38 0.63 1.34 16 3 N -0.13 -2.18 3.94 -187.48 -0.74 -2.92 16 4 N -0.29 -5.92 12.01 -56.16 -0.67 -6.59 16 5 C 0.03 0.58 12.05 85.46 1.03 1.61 16 6 C -0.06 -1.51 6.89 42.24 0.29 -1.22 16 7 C 0.60 18.25 7.63 86.77 0.66 18.92 16 8 O -0.55 -20.13 12.51 -3.89 -0.05 -20.18 16 9 N -0.59 -16.62 2.99 -798.26 -2.38 -19.00 16 10 C 0.09 1.80 6.14 86.27 0.53 2.33 16 11 C -0.12 -2.45 6.07 30.68 0.19 -2.26 16 12 C -0.11 -2.90 5.24 30.58 0.16 -2.74 16 13 C -0.11 -3.67 2.21 -10.74 -0.02 -3.69 16 14 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 15 C 0.13 5.59 3.47 86.30 0.30 5.89 16 16 N -0.62 -31.05 2.70 -698.91 -1.88 -32.93 16 17 C -0.25 -15.29 10.01 84.03 0.84 -14.45 16 18 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 19 C -0.04 -2.14 5.35 84.86 0.45 -1.69 16 20 N -0.96 -62.76 13.97 21.65 0.30 -62.46 16 21 Si 0.96 47.10 24.34 68.60 1.67 48.77 16 22 H -0.27 -12.27 6.78 99.48 0.67 -11.60 16 23 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 24 H -0.25 -11.39 6.14 99.48 0.61 -10.78 16 25 C 0.14 6.04 6.50 86.42 0.56 6.60 16 26 C -0.10 -3.93 3.79 30.66 0.12 -3.82 16 27 C 0.16 5.33 2.63 45.01 0.12 5.45 16 28 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 29 N -0.24 -4.86 8.66 -48.16 -0.42 -5.28 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.13 0.24 8.14 -2.38 -0.02 0.22 16 35 H 0.22 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.13 2.37 4.22 -13.97 -0.06 2.32 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 2.38 4.98 -2.38 -0.01 2.37 16 43 H 0.04 1.76 6.61 -2.39 -0.02 1.74 16 44 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.05 2.23 7.93 -2.38 -0.02 2.21 16 47 H 0.08 3.11 6.46 -2.39 -0.02 3.10 16 48 H 0.04 1.98 7.14 -2.39 -0.02 1.96 16 Total: -1.00 -78.52 364.21 3.20 -75.32 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.78 Total: 13.08 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.59 Total: 12.20 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -5.80 Total: -129.19 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.05 Total: -20.18 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.67 Total: 48.77 kcal Total: -78.52 3.20 -75.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021572665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.323 kcal (2) G-P(sol) polarization free energy of solvation -78.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds