Wall clock time and date at job start Tue Mar 31 2020 18:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34813 * 126.59470 * 2 1 4 4 C 1.36598 * 106.83800 * 180.12725 * 3 2 1 5 5 C 1.47522 * 125.77331 * 179.83841 * 4 3 2 6 6 O 1.21600 * 119.99489 * 6.65474 * 5 4 3 7 7 N 1.34770 * 120.00145 * 186.92932 * 5 4 3 8 8 C 1.46920 * 120.63249 * 8.97351 * 7 5 4 9 9 C 1.52763 * 109.01142 * 233.58510 * 8 7 5 10 10 C 1.53039 * 109.38061 * 305.59283 * 9 8 7 11 11 C 1.53036 * 109.54657 * 61.23512 * 10 9 8 12 12 C 1.46927 * 120.62823 * 189.25249 * 7 5 4 13 13 H 1.08992 * 109.58697 * 246.29661 * 12 7 5 14 14 C 1.52996 * 109.58840 * 6.58380 * 12 7 5 15 15 H 1.08999 * 109.87299 * 301.45529 * 14 12 7 16 16 C 1.54326 * 109.88601 * 62.47571 * 14 12 7 17 17 C 1.55156 * 102.94486 * 141.61198 * 16 14 12 18 18 C 1.54909 * 101.58263 * 324.49732 * 17 16 14 19 19 N 1.47029 * 109.88600 * 180.44253 * 14 12 7 20 20 C 1.36937 * 125.64604 * 61.60222 * 19 14 12 21 21 H 1.07998 * 120.00047 * 331.88144 * 20 19 14 22 22 C 1.38804 * 119.99856 * 151.87940 * 20 19 14 23 23 N 1.31617 * 120.00074 * 165.38897 * 22 20 19 24 24 Si 1.86799 * 120.00156 * 345.39039 * 22 20 19 25 25 H 1.48498 * 109.47394 * 85.96397 * 24 22 20 26 26 H 1.48506 * 109.47353 * 205.96565 * 24 22 20 27 27 H 1.48505 * 109.47137 * 325.96256 * 24 22 20 28 28 N 1.34400 * 108.45605 * 359.57711 * 4 3 2 29 29 N 1.28760 * 109.52768 * 0.26353 * 28 4 3 30 30 H 1.08998 * 109.47215 * 270.31733 * 1 2 3 31 31 H 1.09004 * 109.46750 * 30.31644 * 1 2 3 32 32 H 1.08998 * 109.47565 * 150.31565 * 1 2 3 33 33 H 1.07997 * 126.58184 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.58373 * 353.41652 * 8 7 5 35 35 H 1.08998 * 109.59006 * 113.84669 * 8 7 5 36 36 H 1.08994 * 109.56863 * 185.54829 * 9 8 7 37 37 H 1.09008 * 109.35837 * 65.49286 * 9 8 7 38 38 H 1.09004 * 109.45509 * 301.21104 * 10 9 8 39 39 H 1.09007 * 109.45010 * 181.25193 * 10 9 8 40 40 H 1.08994 * 109.50025 * 178.68362 * 11 10 9 41 41 H 1.09001 * 109.52194 * 58.60024 * 11 10 9 42 42 H 1.09003 * 110.71751 * 259.97788 * 16 14 12 43 43 H 1.09000 * 110.71861 * 23.24457 * 16 14 12 44 44 H 1.09003 * 111.00482 * 82.57353 * 17 16 14 45 45 H 1.09000 * 111.00396 * 206.42263 * 17 16 14 46 46 H 1.08994 * 110.36777 * 155.84849 * 18 17 16 47 47 H 1.09001 * 110.36886 * 278.06459 * 18 17 16 48 48 H 0.97007 * 120.00403 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6206 -0.0029 5 6 4.7705 1.4556 -0.0073 6 8 4.6800 2.6622 0.1133 7 7 5.9814 0.8816 -0.1507 8 6 6.0991 -0.5410 -0.4984 9 6 6.9966 -1.2313 0.5271 10 6 8.3337 -0.4917 0.6113 11 6 8.0941 0.9489 1.0687 12 6 7.2090 1.6652 0.0438 13 1 7.7407 1.7525 -0.9037 14 6 6.8507 3.0597 0.5612 15 1 6.1896 3.5592 -0.1469 16 6 6.1588 2.9477 1.9362 17 6 6.7355 4.1593 2.7152 18 6 8.1870 4.2130 2.1768 19 7 8.0742 3.8534 0.7482 20 6 8.9600 4.1985 -0.2375 21 1 9.0753 3.5662 -1.1054 22 6 9.7095 5.3610 -0.1211 23 7 10.7520 5.5527 -0.9013 24 14 9.2387 6.6532 1.1430 25 1 9.8586 6.3164 2.4497 26 1 9.7219 7.9838 0.6942 27 1 7.7614 6.6869 1.2899 28 7 3.5238 -0.7230 0.0048 29 7 2.3008 -1.1258 0.0067 30 1 -0.3633 0.0057 1.0276 31 1 -0.3633 0.8872 -0.5188 32 1 -0.3634 -0.8928 -0.5089 33 1 1.9562 2.1161 -0.0004 34 1 5.1118 -1.0027 -0.4874 35 1 6.5398 -0.6395 -1.4905 36 1 7.1702 -2.2637 0.2239 37 1 6.5098 -1.2150 1.5023 38 1 8.8084 -0.4870 -0.3699 39 1 8.9833 -0.9964 1.3265 40 1 9.0489 1.4682 1.1509 41 1 7.5972 0.9452 2.0389 42 1 5.0774 3.0356 1.8319 43 1 6.4252 2.0116 2.4268 44 1 6.1944 5.0737 2.4718 45 1 6.7238 3.9745 3.7893 46 1 8.5939 5.2186 2.2824 47 1 8.8139 3.4935 2.7036 48 1 11.2760 6.3650 -0.8198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025229325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:06 Heat of formation + Delta-G solvation = 145.930356 kcal Electronic energy + Delta-G solvation = -30935.266558 eV Core-core repulsion = 27030.578163 eV Total energy + Delta-G solvation = -3904.688395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.42410 -40.36466 -37.40361 -36.83478 -34.95236 -32.58127 -32.41412 -31.57262 -30.74319 -29.75180 -28.17963 -27.45335 -25.07499 -24.09969 -23.43285 -22.71067 -22.22756 -21.02936 -20.52541 -19.74382 -18.65118 -17.39481 -16.82848 -16.48351 -16.08342 -15.81862 -15.55925 -15.07397 -14.78798 -14.45975 -14.11129 -14.01073 -13.82466 -13.60809 -13.40471 -13.27842 -13.07110 -12.84678 -12.51150 -12.27713 -12.11482 -11.97573 -11.42073 -11.31496 -11.16876 -11.06353 -10.90461 -10.66375 -10.56836 -10.46144 -10.34136 -10.01770 -9.77370 -9.70834 -9.60924 -9.40490 -9.23945 -8.74516 -8.43006 -8.04658 -6.74675 -5.82728 -3.19049 0.94832 1.62581 1.79825 3.21277 3.40718 3.41500 3.56068 3.62541 4.05830 4.08442 4.55158 4.55907 4.65081 4.79323 4.84174 5.04455 5.13769 5.18203 5.25048 5.29829 5.37802 5.47290 5.49393 5.67292 5.71941 5.74797 5.82308 5.96927 6.01843 6.08023 6.14012 6.24786 6.27995 6.32701 6.39206 6.44087 6.53625 6.59111 6.59481 6.72629 6.79661 6.97012 7.02669 7.06480 7.45996 7.66779 7.83403 7.98361 8.41843 8.52538 8.99905 9.82178 10.39033 11.34365 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.003978 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.370772 B = 7036.153259 C = 7918.650109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.365 5.365 3 C 0.088 3.912 4 C -0.088 4.088 5 C 0.588 3.412 6 O -0.513 6.513 7 N -0.585 5.585 8 C 0.075 3.925 9 C -0.126 4.126 10 C -0.122 4.122 11 C -0.123 4.123 12 C 0.138 3.862 13 H 0.076 0.924 14 C 0.161 3.839 15 H 0.087 0.913 16 C -0.129 4.129 17 C -0.136 4.136 18 C 0.115 3.885 19 N -0.606 5.606 20 C -0.233 4.233 21 H 0.087 0.913 22 C 0.021 3.979 23 N -0.917 5.917 24 Si 0.902 3.098 25 H -0.289 1.289 26 H -0.310 1.310 27 H -0.274 1.274 28 N -0.205 5.205 29 N -0.074 5.074 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.205 0.795 34 H 0.131 0.869 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.038 0.962 47 H 0.027 0.973 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.417 -13.883 3.613 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.150 5.150 3 C -0.068 4.068 4 C -0.227 4.227 5 C 0.374 3.626 6 O -0.389 6.389 7 N -0.317 5.317 8 C -0.048 4.048 9 C -0.164 4.164 10 C -0.160 4.160 11 C -0.160 4.160 12 C 0.034 3.966 13 H 0.094 0.906 14 C 0.055 3.945 15 H 0.104 0.896 16 C -0.167 4.167 17 C -0.175 4.175 18 C -0.009 4.009 19 N -0.332 5.332 20 C -0.361 4.361 21 H 0.105 0.895 22 C -0.177 4.177 23 N -0.562 5.562 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.239 1.239 27 H -0.201 1.201 28 N -0.078 5.078 29 N -0.053 5.053 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.222 0.778 34 H 0.148 0.852 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.284 -14.623 3.542 25.255 hybrid contribution -0.163 1.692 0.723 1.847 sum -20.447 -12.931 4.265 24.566 Atomic orbital electron populations 1.22182 0.72673 1.05731 1.04706 1.50319 1.09009 1.05753 1.49942 1.23392 0.90123 0.94976 0.98299 1.21816 0.95085 0.90089 1.15755 1.16818 0.81525 0.86186 0.78090 1.90806 1.85466 1.12916 1.49677 1.47960 1.05239 1.10968 1.67539 1.22510 1.04363 0.80548 0.97423 1.21743 0.96185 0.98773 0.99734 1.21581 0.96558 0.96343 1.01500 1.21911 1.01180 0.94485 0.98468 1.22022 0.82953 0.92401 0.99179 0.90589 1.21607 0.87559 0.89146 0.96232 0.89578 1.23112 1.00951 0.96973 0.95621 1.22764 0.97533 0.99004 0.98169 1.22004 0.94256 0.97852 0.86804 1.44962 1.23973 1.61933 1.02345 1.18594 1.13669 1.03612 1.00204 0.89524 1.25160 0.97522 0.97144 0.97890 1.69766 1.17440 1.27495 1.41450 0.86614 0.78880 0.80770 0.80121 1.21810 1.23881 1.20058 1.74229 1.11801 1.10611 1.11144 1.81996 0.93887 1.06842 1.22597 0.89293 0.88386 0.88167 0.77788 0.85203 0.92268 0.91416 0.91983 0.92018 0.92376 0.89517 0.91982 0.89508 0.92462 0.91834 0.92373 0.94485 0.95471 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.26 11.51 59.85 0.69 0.95 16 2 N -0.36 -3.05 4.03 -67.85 -0.27 -3.32 16 3 C 0.09 0.85 11.32 -16.83 -0.19 0.66 16 4 C -0.09 -1.15 6.73 -83.55 -0.56 -1.71 16 5 C 0.59 9.36 6.69 -12.48 -0.08 9.27 16 6 O -0.51 -9.25 10.34 5.28 0.05 -9.20 16 7 N -0.59 -9.42 2.94 -166.71 -0.49 -9.90 16 8 C 0.08 1.03 6.26 -3.93 -0.02 1.00 16 9 C -0.13 -1.59 6.07 -26.83 -0.16 -1.76 16 10 C -0.12 -1.74 5.88 -26.69 -0.16 -1.89 16 11 C -0.12 -2.12 4.96 -26.61 -0.13 -2.25 16 12 C 0.14 2.60 2.67 -67.60 -0.18 2.42 16 13 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 14 C 0.16 3.43 2.29 -66.95 -0.15 3.28 16 15 H 0.09 2.06 5.87 -52.20 -0.31 1.75 16 16 C -0.13 -2.42 4.86 -24.90 -0.12 -2.54 16 17 C -0.14 -2.66 7.08 -24.58 -0.17 -2.83 16 18 C 0.12 2.65 6.15 -2.35 -0.01 2.64 16 19 N -0.61 -15.03 2.27 -162.32 -0.37 -15.40 16 20 C -0.23 -6.69 10.24 -15.06 -0.15 -6.84 16 21 H 0.09 2.63 7.59 -52.49 -0.40 2.23 16 22 C 0.02 0.63 5.48 -17.43 -0.10 0.54 16 23 N -0.92 -28.90 13.97 55.49 0.78 -28.12 16 24 Si 0.90 24.00 24.58 -169.99 -4.18 19.82 16 25 H -0.29 -7.48 6.71 56.52 0.38 -7.10 16 26 H -0.31 -8.33 7.11 56.52 0.40 -7.93 16 27 H -0.27 -7.23 7.03 56.52 0.40 -6.84 16 28 N -0.21 -2.67 8.77 32.85 0.29 -2.38 16 29 N -0.07 -0.86 13.78 60.35 0.83 -0.02 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.21 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.73 3.77 -107.75 -0.41 1.32 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.09 1.73 7.84 -51.93 -0.41 1.33 16 41 H 0.06 1.06 5.76 -51.93 -0.30 0.76 16 42 H 0.09 1.59 5.60 -51.94 -0.29 1.30 16 43 H 0.06 1.02 5.51 -51.93 -0.29 0.73 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.04 0.93 2.12 -51.93 -0.11 0.82 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -34.89 357.30 -6.63 -41.52 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.13 Total: 0.71 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.52 Total: 0.93 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.76 Total: -59.16 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.05 Total: -9.20 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -4.18 Total: 19.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.89 -6.63 -41.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025229325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.450 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds