Wall clock time and date at job start Tue Mar 31 2020 18:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34813 * 126.59470 * 2 1 4 4 C 1.36598 * 106.83800 * 180.12725 * 3 2 1 5 5 C 1.47522 * 125.77331 * 179.83841 * 4 3 2 6 6 O 1.21600 * 119.99489 * 6.65474 * 5 4 3 7 7 N 1.34770 * 120.00145 * 186.92932 * 5 4 3 8 8 C 1.46920 * 120.63249 * 8.97351 * 7 5 4 9 9 C 1.52763 * 109.01142 * 233.58510 * 8 7 5 10 10 C 1.53039 * 109.38061 * 305.59283 * 9 8 7 11 11 C 1.53036 * 109.54657 * 61.23512 * 10 9 8 12 12 C 1.46927 * 120.62823 * 189.25249 * 7 5 4 13 13 H 1.08992 * 109.58697 * 246.29661 * 12 7 5 14 14 C 1.52996 * 109.58840 * 6.58380 * 12 7 5 15 15 H 1.08999 * 109.87299 * 301.45529 * 14 12 7 16 16 C 1.54326 * 109.88601 * 62.47571 * 14 12 7 17 17 C 1.55156 * 102.94486 * 141.61198 * 16 14 12 18 18 C 1.54909 * 101.58263 * 324.49732 * 17 16 14 19 19 N 1.47029 * 109.88600 * 180.44253 * 14 12 7 20 20 C 1.36937 * 125.64604 * 61.60222 * 19 14 12 21 21 H 1.07998 * 120.00047 * 331.88144 * 20 19 14 22 22 C 1.38804 * 119.99856 * 151.87940 * 20 19 14 23 23 N 1.31617 * 120.00074 * 165.38897 * 22 20 19 24 24 Si 1.86799 * 120.00156 * 345.39039 * 22 20 19 25 25 H 1.48498 * 109.47394 * 85.96397 * 24 22 20 26 26 H 1.48506 * 109.47353 * 205.96565 * 24 22 20 27 27 H 1.48505 * 109.47137 * 325.96256 * 24 22 20 28 28 N 1.34400 * 108.45605 * 359.57711 * 4 3 2 29 29 N 1.28760 * 109.52768 * 0.26353 * 28 4 3 30 30 H 1.08998 * 109.47215 * 270.31733 * 1 2 3 31 31 H 1.09004 * 109.46750 * 30.31644 * 1 2 3 32 32 H 1.08998 * 109.47565 * 150.31565 * 1 2 3 33 33 H 1.07997 * 126.58184 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.58373 * 353.41652 * 8 7 5 35 35 H 1.08998 * 109.59006 * 113.84669 * 8 7 5 36 36 H 1.08994 * 109.56863 * 185.54829 * 9 8 7 37 37 H 1.09008 * 109.35837 * 65.49286 * 9 8 7 38 38 H 1.09004 * 109.45509 * 301.21104 * 10 9 8 39 39 H 1.09007 * 109.45010 * 181.25193 * 10 9 8 40 40 H 1.08994 * 109.50025 * 178.68362 * 11 10 9 41 41 H 1.09001 * 109.52194 * 58.60024 * 11 10 9 42 42 H 1.09003 * 110.71751 * 259.97788 * 16 14 12 43 43 H 1.09000 * 110.71861 * 23.24457 * 16 14 12 44 44 H 1.09003 * 111.00482 * 82.57353 * 17 16 14 45 45 H 1.09000 * 111.00396 * 206.42263 * 17 16 14 46 46 H 1.08994 * 110.36777 * 155.84849 * 18 17 16 47 47 H 1.09001 * 110.36886 * 278.06459 * 18 17 16 48 48 H 0.97007 * 120.00403 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6206 -0.0029 5 6 4.7705 1.4556 -0.0073 6 8 4.6800 2.6622 0.1133 7 7 5.9814 0.8816 -0.1507 8 6 6.0991 -0.5410 -0.4984 9 6 6.9966 -1.2313 0.5271 10 6 8.3337 -0.4917 0.6113 11 6 8.0941 0.9489 1.0687 12 6 7.2090 1.6652 0.0438 13 1 7.7407 1.7525 -0.9037 14 6 6.8507 3.0597 0.5612 15 1 6.1896 3.5592 -0.1469 16 6 6.1588 2.9477 1.9362 17 6 6.7355 4.1593 2.7152 18 6 8.1870 4.2130 2.1768 19 7 8.0742 3.8534 0.7482 20 6 8.9600 4.1985 -0.2375 21 1 9.0753 3.5662 -1.1054 22 6 9.7095 5.3610 -0.1211 23 7 10.7520 5.5527 -0.9013 24 14 9.2387 6.6532 1.1430 25 1 9.8586 6.3164 2.4497 26 1 9.7219 7.9838 0.6942 27 1 7.7614 6.6869 1.2899 28 7 3.5238 -0.7230 0.0048 29 7 2.3008 -1.1258 0.0067 30 1 -0.3633 0.0057 1.0276 31 1 -0.3633 0.8872 -0.5188 32 1 -0.3634 -0.8928 -0.5089 33 1 1.9562 2.1161 -0.0004 34 1 5.1118 -1.0027 -0.4874 35 1 6.5398 -0.6395 -1.4905 36 1 7.1702 -2.2637 0.2239 37 1 6.5098 -1.2150 1.5023 38 1 8.8084 -0.4870 -0.3699 39 1 8.9833 -0.9964 1.3265 40 1 9.0489 1.4682 1.1509 41 1 7.5972 0.9452 2.0389 42 1 5.0774 3.0356 1.8319 43 1 6.4252 2.0116 2.4268 44 1 6.1944 5.0737 2.4718 45 1 6.7238 3.9745 3.7893 46 1 8.5939 5.2186 2.2824 47 1 8.8139 3.4935 2.7036 48 1 11.2760 6.3650 -0.8198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025229325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:05 Heat of formation + Delta-G solvation = 121.838807 kcal Electronic energy + Delta-G solvation = -30936.311246 eV Core-core repulsion = 27030.578163 eV Total energy + Delta-G solvation = -3905.733083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.26998 -41.71293 -38.96892 -38.18144 -35.66136 -34.58342 -33.75424 -32.90967 -31.84739 -31.60028 -28.97573 -28.70136 -26.49840 -25.99381 -24.59264 -23.81429 -23.16149 -22.62094 -21.72389 -21.28005 -19.92082 -18.99534 -18.17178 -17.90769 -17.27448 -16.91872 -16.84488 -16.41204 -16.13338 -15.70618 -15.51372 -15.26681 -15.05561 -14.81999 -14.66592 -14.52051 -14.20759 -14.01964 -13.96283 -13.86039 -13.35387 -13.16892 -13.03169 -12.84230 -12.80177 -12.57449 -12.42403 -12.27161 -11.82930 -11.75761 -11.67603 -11.46504 -11.32826 -11.27316 -11.20264 -10.87946 -10.65372 -10.25454 -10.21055 -9.39417 -8.81261 -8.14511 -5.46757 0.20328 0.62603 1.21608 1.27107 1.38293 1.50373 1.99282 2.27091 2.42714 3.09932 3.18515 3.38365 3.52346 3.80506 3.87724 3.95134 3.99674 4.01731 4.10127 4.12233 4.19423 4.32411 4.35442 4.41795 4.44813 4.49027 4.65478 4.67969 4.68915 4.72891 4.82602 4.86540 4.99955 5.01742 5.08198 5.14947 5.19119 5.25445 5.31264 5.33473 5.38048 5.50092 5.51786 5.62190 5.82257 5.85883 6.17570 6.49423 6.83870 6.91542 7.24336 7.59532 8.22756 9.06686 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.003978 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.370772 B = 7036.153259 C = 7918.650109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.349 5.349 3 C 0.108 3.892 4 C -0.117 4.117 5 C 0.587 3.413 6 O -0.541 6.541 7 N -0.589 5.589 8 C 0.073 3.927 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.113 4.113 12 C 0.147 3.853 13 H 0.038 0.962 14 C 0.159 3.841 15 H 0.058 0.942 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.106 3.894 19 N -0.620 5.620 20 C -0.218 4.218 21 H 0.052 0.948 22 C -0.038 4.038 23 N -0.963 5.963 24 Si 0.965 3.035 25 H -0.275 1.275 26 H -0.314 1.314 27 H -0.270 1.270 28 N -0.221 5.221 29 N -0.090 5.090 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.234 0.766 34 H 0.142 0.858 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.096 0.904 46 H 0.022 0.978 47 H 0.035 0.965 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.773 -15.225 5.798 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.134 5.134 3 C -0.050 4.050 4 C -0.256 4.256 5 C 0.375 3.625 6 O -0.419 6.419 7 N -0.320 5.320 8 C -0.050 4.050 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.151 4.151 12 C 0.043 3.957 13 H 0.056 0.944 14 C 0.054 3.946 15 H 0.076 0.924 16 C -0.150 4.150 17 C -0.165 4.165 18 C -0.018 4.018 19 N -0.346 5.346 20 C -0.347 4.347 21 H 0.070 0.930 22 C -0.232 4.232 23 N -0.610 5.610 24 Si 0.798 3.202 25 H -0.203 1.203 26 H -0.244 1.244 27 H -0.196 1.196 28 N -0.093 5.093 29 N -0.070 5.070 30 H 0.126 0.874 31 H 0.145 0.855 32 H 0.128 0.872 33 H 0.250 0.750 34 H 0.159 0.841 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.115 0.885 46 H 0.039 0.961 47 H 0.053 0.947 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.709 -16.033 5.747 29.193 hybrid contribution 0.716 2.004 -0.056 2.129 sum -22.993 -14.030 5.691 27.530 Atomic orbital electron populations 1.22719 0.69342 1.07739 1.06577 1.50659 1.10619 1.04463 1.47658 1.23771 0.89028 0.96285 0.95923 1.21467 0.94964 0.90255 1.18957 1.17159 0.82096 0.86214 0.77008 1.90776 1.85971 1.14121 1.51047 1.47967 1.04498 1.11706 1.67854 1.22701 1.05405 0.79171 0.97714 1.21696 0.94531 0.99704 0.99535 1.21552 0.98079 0.94562 1.01367 1.21771 0.99001 0.95998 0.98337 1.21560 0.84391 0.92100 0.97697 0.94402 1.21657 0.85825 0.89506 0.97615 0.92418 1.22995 1.01137 0.97384 0.93466 1.22757 0.94480 0.98951 1.00359 1.22172 0.97010 0.96936 0.85680 1.45058 1.24493 1.62367 1.02726 1.18463 1.13591 1.02673 0.99992 0.93049 1.25789 0.97726 0.99170 1.00549 1.69899 1.18934 1.28168 1.44025 0.85571 0.78585 0.77719 0.78320 1.20316 1.24410 1.19629 1.74105 1.12827 1.10584 1.11804 1.81909 0.93812 1.08131 1.23156 0.87404 0.85492 0.87156 0.74964 0.84103 0.92542 0.88707 0.91698 0.92917 0.90598 0.92917 0.91124 0.88510 0.91159 0.92392 0.88517 0.96076 0.94684 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.14 11.51 127.77 1.47 1.61 16 2 N -0.35 -4.68 4.03 -368.58 -1.49 -6.17 16 3 C 0.11 1.76 11.32 83.85 0.95 2.71 16 4 C -0.12 -2.86 6.73 40.82 0.27 -2.58 16 5 C 0.59 18.39 6.69 86.69 0.58 18.97 16 6 O -0.54 -19.40 10.34 -4.03 -0.04 -19.44 16 7 N -0.59 -19.01 2.94 -799.60 -2.35 -21.36 16 8 C 0.07 1.94 6.26 86.22 0.54 2.48 16 9 C -0.12 -2.73 6.07 30.53 0.19 -2.54 16 10 C -0.12 -3.27 5.88 30.62 0.18 -3.09 16 11 C -0.11 -3.94 4.96 30.67 0.15 -3.79 16 12 C 0.15 5.75 2.67 44.98 0.12 5.87 16 13 H 0.04 1.74 7.58 -2.39 -0.02 1.72 16 14 C 0.16 6.93 2.29 45.34 0.10 7.03 16 15 H 0.06 2.87 5.87 -6.79 -0.04 2.83 16 16 C -0.11 -4.03 4.86 31.78 0.15 -3.88 16 17 C -0.13 -4.64 7.08 31.99 0.23 -4.42 16 18 C 0.11 4.79 6.15 86.79 0.53 5.32 16 19 N -0.62 -31.52 2.27 -667.45 -1.52 -33.04 16 20 C -0.22 -13.14 10.24 84.03 0.86 -12.28 16 21 H 0.05 3.39 7.59 -2.91 -0.02 3.36 16 22 C -0.04 -2.37 5.48 84.86 0.46 -1.90 16 23 N -0.96 -63.24 13.97 21.65 0.30 -62.94 16 24 Si 0.97 50.74 24.58 68.60 1.69 52.43 16 25 H -0.28 -13.70 6.71 99.48 0.67 -13.03 16 26 H -0.31 -16.61 7.11 99.48 0.71 -15.90 16 27 H -0.27 -13.86 7.03 99.48 0.70 -13.16 16 28 N -0.22 -5.36 8.77 -49.99 -0.44 -5.80 16 29 N -0.09 -1.88 13.78 37.02 0.51 -1.37 16 30 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.13 -0.42 8.14 -2.38 -0.02 -0.44 16 32 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.23 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.14 3.58 3.77 -74.62 -0.28 3.29 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.05 2.18 7.84 -2.39 -0.02 2.16 16 41 H 0.07 2.32 5.76 -2.39 -0.01 2.31 16 42 H 0.10 3.36 5.60 -2.78 -0.02 3.35 16 43 H 0.07 2.34 5.51 -2.39 -0.01 2.32 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 46 H 0.02 1.05 2.12 -2.39 -0.01 1.04 16 47 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 48 H 0.26 16.29 8.31 -92.70 -0.77 15.52 16 Total: -1.00 -80.14 357.30 4.10 -76.04 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.64 Total: 12.16 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.80 Total: 9.49 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -4.98 Total: -130.68 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.04 Total: -19.44 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 1.69 Total: 52.43 kcal Total: -80.14 4.10 -76.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025229325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.881 kcal (2) G-P(sol) polarization free energy of solvation -80.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds