Wall clock time and date at job start Tue Mar 31 2020 18:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29103 * 126.00817 * 2 1 4 4 N 1.29025 * 110.25855 * 180.10365 * 3 2 1 5 5 C 1.32908 * 108.63220 * 0.02562 * 4 3 2 6 6 C 1.34391 * 126.00329 * 180.02562 * 2 1 3 7 7 C 1.50535 * 129.25978 * 359.81788 * 6 2 1 8 8 C 1.53439 * 108.32717 * 196.42544 * 7 6 2 9 9 H 1.09007 * 109.45718 * 70.28634 * 8 7 6 10 10 C 1.50703 * 109.45653 * 190.25533 * 8 7 6 11 11 O 1.21281 * 120.00362 * 0.02947 * 10 8 7 12 12 N 1.34776 * 119.99807 * 180.02562 * 10 8 7 13 13 C 1.46497 * 119.99934 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.47109 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.88598 * 308.88455 * 14 13 12 16 16 C 1.55152 * 111.00487 * 185.00287 * 14 13 12 17 17 C 1.54321 * 102.94199 * 206.42295 * 16 14 13 18 18 N 1.47020 * 107.27220 * 22.19035 * 17 16 14 19 19 C 1.36935 * 125.64986 * 181.02099 * 18 17 16 20 20 H 1.08006 * 120.00379 * 170.16473 * 19 18 17 21 21 C 1.38815 * 120.00086 * 350.16982 * 19 18 17 22 22 N 1.31617 * 120.00002 * 164.67953 * 21 19 18 23 23 Si 1.86797 * 119.99769 * 344.39819 * 21 19 18 24 24 H 1.48505 * 109.47123 * 185.80637 * 23 21 19 25 25 H 1.48497 * 109.47500 * 305.80875 * 23 21 19 26 26 H 1.48502 * 109.46750 * 65.81035 * 23 21 19 27 27 C 1.47421 * 108.70172 * 1.28921 * 18 17 16 28 28 C 1.53106 * 109.53637 * 310.27324 * 8 7 6 29 29 C 1.50596 * 129.16064 * 179.77188 * 5 4 3 30 30 H 1.09002 * 109.47719 * 269.96777 * 1 2 3 31 31 H 1.09006 * 109.47064 * 29.96577 * 1 2 3 32 32 H 1.08999 * 109.47258 * 149.96176 * 1 2 3 33 33 H 1.08998 * 109.69351 * 76.71645 * 7 6 2 34 34 H 1.09002 * 109.69147 * 316.12978 * 7 6 2 35 35 H 0.97009 * 120.00158 * 0.02562 * 12 10 8 36 36 H 1.09000 * 109.47022 * 60.00354 * 13 12 10 37 37 H 1.08995 * 109.47153 * 299.99707 * 13 12 10 38 38 H 1.08996 * 110.72276 * 88.05658 * 16 14 13 39 39 H 1.09003 * 110.72144 * 324.78236 * 16 14 13 40 40 H 1.08998 * 109.88381 * 262.77227 * 17 16 14 41 41 H 1.09002 * 109.88661 * 141.61160 * 17 16 14 42 42 H 0.97003 * 119.99918 * 354.76549 * 22 21 19 43 43 H 1.09003 * 110.36905 * 94.48538 * 27 18 17 44 44 H 1.08998 * 110.36578 * 216.80314 * 27 18 17 45 45 H 1.09003 * 109.44938 * 190.10647 * 28 8 7 46 46 H 1.09001 * 109.45275 * 310.03789 * 28 8 7 47 47 H 1.09006 * 109.69178 * 316.33635 * 29 5 4 48 48 H 1.09003 * 109.68659 * 76.86714 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6941 -0.0022 5 6 3.5326 -0.6333 -0.0043 6 6 2.2550 -1.0872 -0.0005 7 6 1.8721 -2.5430 0.0026 8 6 3.1015 -3.3644 0.4124 9 1 3.3152 -3.1962 1.4680 10 6 2.8265 -4.8283 0.1830 11 8 1.7558 -5.1814 -0.2639 12 7 3.7705 -5.7450 0.4743 13 6 3.5030 -7.1681 0.2518 14 6 4.7284 -7.9876 0.6615 15 1 5.6316 -7.5969 0.1927 16 6 4.5315 -9.4891 0.3241 17 6 5.4394 -10.1964 1.3521 18 7 5.6363 -9.2661 2.4735 19 6 6.3984 -9.5065 3.5855 20 1 6.6103 -8.7056 4.2784 21 6 6.8986 -10.7796 3.8221 22 7 7.8621 -10.9551 4.7015 23 14 6.1990 -12.2446 2.8983 24 1 6.7984 -13.4959 3.4278 25 1 4.7257 -12.2863 3.0791 26 1 6.5170 -12.1163 1.4534 27 6 4.8722 -8.0342 2.2054 28 6 4.3077 -2.9344 -0.4269 29 6 4.7467 -1.5243 -0.0119 30 1 -0.3634 -0.0006 1.0276 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3634 -0.8896 -0.5144 33 1 1.5480 -2.8397 -0.9950 34 1 1.0649 -2.7090 0.7161 35 1 4.6269 -5.4627 0.8321 36 1 3.2889 -7.3368 -0.8035 37 1 2.6450 -7.4744 0.8502 38 1 4.8611 -9.7023 -0.6927 39 1 3.4908 -9.7823 0.4627 40 1 6.4000 -10.4354 0.8958 41 1 4.9582 -11.1078 1.7067 42 1 8.2748 -10.1880 5.1284 43 1 3.8917 -8.0854 2.6788 44 1 5.4211 -7.1624 2.5614 45 1 5.1293 -3.6324 -0.2660 46 1 4.0339 -2.9334 -1.4820 47 1 5.4783 -1.1422 -0.7239 48 1 5.1860 -1.5549 0.9852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028764577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:44 Heat of formation + Delta-G solvation = 83.481982 kcal Electronic energy + Delta-G solvation = -28446.564635 eV Core-core repulsion = 24539.168275 eV Total energy + Delta-G solvation = -3907.396360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.74380 -40.29043 -38.22208 -36.95681 -35.28509 -34.94195 -32.73619 -31.11106 -30.97877 -30.14592 -28.79453 -28.23526 -26.17976 -24.65409 -23.70909 -22.95379 -21.78282 -21.13186 -20.65918 -20.11795 -19.65372 -17.84513 -17.46085 -17.26634 -16.74804 -16.40378 -15.74399 -15.38496 -14.99641 -14.94249 -14.32419 -14.23021 -14.20358 -13.85027 -13.70543 -13.62368 -13.28960 -13.17564 -12.92360 -12.59276 -12.57138 -12.41979 -12.10397 -11.89909 -11.68160 -11.55631 -11.42471 -11.25909 -11.02603 -10.89253 -10.66975 -10.52052 -10.31242 -10.02866 -9.96120 -9.37257 -9.20649 -9.14970 -9.00252 -8.73533 -7.07867 -6.34286 -3.25605 1.20819 1.94826 2.21774 2.41651 2.95051 3.39222 3.47837 3.69454 3.75799 4.01672 4.18648 4.32470 4.35945 4.47378 4.49230 4.59657 4.69499 4.75520 4.78758 4.84302 4.94929 5.02416 5.03536 5.10040 5.18122 5.20987 5.41992 5.43011 5.45829 5.54740 5.57733 5.64574 5.69265 5.73068 5.73979 5.90481 5.96644 6.04122 6.15893 6.19621 6.26141 6.35109 6.46287 6.67102 6.72470 7.32654 7.62624 8.01672 8.18233 8.29966 9.00514 9.52646 10.18991 11.16310 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025113 B = 0.002128 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.684703 B =13157.549378 C =13698.008978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.098 5.098 4 N -0.261 5.261 5 C -0.020 4.020 6 C -0.017 4.017 7 C -0.024 4.024 8 C -0.103 4.103 9 H 0.107 0.893 10 C 0.520 3.480 11 O -0.544 6.544 12 N -0.722 5.722 13 C 0.132 3.868 14 C -0.118 4.118 15 H 0.085 0.915 16 C -0.120 4.120 17 C 0.110 3.890 18 N -0.614 5.614 19 C -0.323 4.323 20 H 0.078 0.922 21 C -0.022 4.022 22 N -0.928 5.928 23 Si 1.071 2.929 24 H -0.302 1.302 25 H -0.299 1.299 26 H -0.286 1.286 27 C 0.142 3.858 28 C -0.112 4.112 29 C -0.032 4.032 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.404 0.596 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.029 0.971 42 H 0.261 0.739 43 H 0.024 0.976 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.593 18.958 -13.236 26.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.075 5.075 3 N -0.076 5.076 4 N -0.125 5.125 5 C -0.161 4.161 6 C -0.151 4.151 7 C -0.063 4.063 8 C -0.125 4.125 9 H 0.125 0.875 10 C 0.306 3.694 11 O -0.421 6.421 12 N -0.373 5.373 13 C 0.008 3.992 14 C -0.138 4.138 15 H 0.103 0.897 16 C -0.158 4.158 17 C -0.015 4.015 18 N -0.341 5.341 19 C -0.450 4.450 20 H 0.096 0.904 21 C -0.222 4.222 22 N -0.569 5.569 23 Si 0.905 3.095 24 H -0.230 1.230 25 H -0.227 1.227 26 H -0.213 1.213 27 C 0.016 3.984 28 C -0.150 4.150 29 C -0.071 4.071 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.238 0.762 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.109 0.891 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.222 18.625 -13.585 27.087 hybrid contribution -0.064 0.773 0.469 0.907 sum -14.286 19.398 -13.116 27.430 Atomic orbital electron populations 1.22309 0.72647 1.06081 1.05228 1.46829 1.09236 1.04573 1.46910 1.78596 0.96126 1.11264 1.21641 1.74809 1.09595 1.11945 1.16200 1.21702 0.94983 0.91394 1.07984 1.21815 0.91257 0.92252 1.09746 1.19903 0.97599 0.84594 1.04253 1.21338 0.96485 0.91656 1.03033 0.87483 1.20319 0.84038 0.87551 0.77522 1.90703 1.24518 1.81931 1.44991 1.46049 1.18180 1.07204 1.65845 1.21388 0.98007 0.78661 1.01124 1.22690 0.97027 0.95475 0.98618 0.89690 1.22544 1.00301 0.93826 0.99136 1.21982 0.97224 0.93523 0.88757 1.44837 1.55895 1.13724 1.19663 1.20159 1.26645 0.97390 1.00850 0.90430 1.25855 0.97799 0.98774 0.99740 1.70896 1.23205 1.33207 1.29583 0.83835 0.74655 0.76034 0.74998 1.23009 1.22737 1.21337 1.21648 0.94952 0.90732 0.91090 1.21663 0.96618 0.96412 1.00297 1.19955 0.92581 0.91044 1.03493 0.88863 0.87878 0.88112 0.88486 0.89425 0.76159 0.91366 0.91140 0.91030 0.91231 0.93548 0.95375 0.92865 0.95829 0.93957 0.89658 0.90527 0.89143 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 11.27 59.85 0.67 0.99 16 2 N -0.28 -2.53 3.73 -64.00 -0.24 -2.77 16 3 N -0.10 -1.18 13.19 60.35 0.80 -0.39 16 4 N -0.26 -3.36 12.40 33.16 0.41 -2.94 16 5 C -0.02 -0.21 7.11 -83.12 -0.59 -0.80 16 6 C -0.02 -0.15 6.76 -82.50 -0.56 -0.71 16 7 C -0.02 -0.18 4.68 -27.74 -0.13 -0.31 16 8 C -0.10 -0.76 2.50 -91.49 -0.23 -0.98 16 9 H 0.11 0.70 8.12 -51.93 -0.42 0.28 16 10 C 0.52 5.26 7.15 -10.98 -0.08 5.18 16 11 O -0.54 -7.37 15.82 5.56 0.09 -7.28 16 12 N -0.72 -7.03 5.32 -60.29 -0.32 -7.35 16 13 C 0.13 1.53 5.13 -4.04 -0.02 1.51 16 14 C -0.12 -1.63 3.06 -88.35 -0.27 -1.90 16 15 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 16 C -0.12 -1.81 6.42 -24.90 -0.16 -1.97 16 17 C 0.11 2.29 4.61 -3.07 -0.01 2.27 16 18 N -0.61 -14.44 3.33 -169.94 -0.57 -15.01 16 19 C -0.32 -9.08 10.55 -15.06 -0.16 -9.24 16 20 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 21 C -0.02 -0.65 5.49 -17.43 -0.10 -0.75 16 22 N -0.93 -28.92 13.70 55.49 0.76 -28.16 16 23 Si 1.07 26.54 24.53 -169.99 -4.17 22.37 16 24 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 25 H -0.30 -7.18 6.84 56.52 0.39 -6.79 16 26 H -0.29 -6.42 5.42 56.52 0.31 -6.11 16 27 C 0.14 2.57 6.65 -2.41 -0.02 2.56 16 28 C -0.11 -0.70 5.17 -26.47 -0.14 -0.83 16 29 C -0.03 -0.23 6.30 -27.73 -0.17 -0.40 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.22 7.96 -51.93 -0.41 -0.19 16 33 H 0.10 0.76 7.78 -51.93 -0.40 0.35 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 3.23 7.80 -40.82 -0.32 2.91 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 40 H 0.05 1.01 6.74 -51.93 -0.35 0.66 16 41 H 0.03 0.63 3.89 -51.93 -0.20 0.43 16 42 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 43 H 0.02 0.44 7.91 -51.93 -0.41 0.03 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.42 7.30 -51.93 -0.38 0.04 16 46 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -37.00 375.96 -7.17 -44.17 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -7.64 Total: -2.94 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.96 Total: -5.38 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.84 Total: -56.62 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.09 Total: -7.28 kcal Atomic # 14 Polarization: 26.54 SS G_CDS: -4.17 Total: 22.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.00 -7.17 -44.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028764577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.653 kcal (2) G-P(sol) polarization free energy of solvation -36.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds