Wall clock time and date at job start Tue Mar 31 2020 18:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47132 * 2 1 4 4 C 1.34773 * 120.00313 * 275.54920 * 3 2 1 5 5 O 1.21278 * 119.99953 * 184.62673 * 4 3 2 6 6 C 1.50705 * 119.99974 * 4.62317 * 4 3 2 7 7 H 1.08996 * 109.71890 * 25.40090 * 6 4 3 8 8 C 1.53350 * 109.72006 * 145.89088 * 6 4 3 9 9 C 1.53114 * 109.62294 * 169.28547 * 8 6 4 10 10 C 1.53422 * 109.57024 * 290.00123 * 9 8 6 11 11 C 1.50593 * 108.33610 * 49.80939 * 10 9 8 12 12 N 1.32907 * 129.16278 * 163.45342 * 11 10 9 13 13 N 1.29019 * 108.63770 * 180.21234 * 12 11 10 14 14 N 1.29107 * 110.25485 * 359.97438 * 13 12 11 15 15 H 0.97005 * 125.99956 * 179.91339 * 14 13 12 16 16 C 1.34390 * 107.99023 * 359.92772 * 14 13 12 17 17 C 1.46504 * 119.99746 * 95.54680 * 3 2 1 18 18 H 1.09005 * 110.64114 * 187.91158 * 17 3 2 19 19 C 1.55156 * 110.72197 * 311.05234 * 17 3 2 20 20 C 1.55118 * 101.48808 * 153.73404 * 19 17 3 21 21 N 1.47423 * 104.94286 * 323.22456 * 20 19 17 22 22 C 1.36933 * 125.64921 * 204.03567 * 21 20 19 23 23 H 1.08004 * 120.00038 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00229 * 359.96277 * 22 21 20 25 25 N 1.31615 * 119.99846 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00297 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47049 * 89.99684 * 26 24 22 28 28 H 1.48496 * 109.46871 * 209.99765 * 26 24 22 29 29 H 1.48497 * 109.46838 * 329.99835 * 26 24 22 30 30 C 1.47026 * 108.70410 * 24.00229 * 21 20 19 31 31 H 1.09004 * 109.47090 * 65.72583 * 1 2 3 32 32 H 1.09005 * 109.47206 * 185.72184 * 1 2 3 33 33 H 1.09001 * 109.47271 * 305.72587 * 1 2 3 34 34 H 1.09004 * 109.47026 * 240.00262 * 2 1 3 35 35 H 1.09001 * 109.47064 * 120.00497 * 2 1 3 36 36 H 1.08998 * 109.35605 * 49.28005 * 8 6 4 37 37 H 1.09002 * 109.49185 * 289.36812 * 8 6 4 38 38 H 1.08998 * 109.45332 * 169.97247 * 9 8 6 39 39 H 1.08991 * 109.45549 * 50.03295 * 9 8 6 40 40 H 1.08998 * 109.69146 * 290.09280 * 10 9 8 41 41 H 1.09003 * 109.72233 * 169.53817 * 10 9 8 42 42 H 1.09000 * 111.00252 * 271.94197 * 19 17 3 43 43 H 1.09004 * 110.99976 * 35.78773 * 19 17 3 44 44 H 1.09004 * 110.41977 * 204.29652 * 20 19 17 45 45 H 1.09000 * 110.20602 * 82.04432 * 20 19 17 46 46 H 0.97002 * 120.00493 * 179.97438 * 25 24 22 47 47 H 1.09000 * 109.88203 * 239.52881 * 30 21 20 48 48 H 1.08997 * 109.88324 * 118.35726 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1366 2.0542 -1.1617 5 8 2.6192 3.1667 -1.1715 6 6 1.6691 1.4242 -2.4484 7 1 0.8954 0.6863 -2.2368 8 6 1.1084 2.5054 -3.3801 9 6 0.8830 1.9158 -4.7751 10 6 2.2372 1.6314 -5.4377 11 6 3.0859 0.8541 -4.4665 12 7 4.1871 0.1456 -4.6943 13 7 4.5898 -0.3609 -3.5781 14 7 3.7980 -0.0149 -2.6188 15 1 3.8864 -0.2690 -1.6868 16 6 2.8299 0.7589 -3.1384 17 6 2.3781 2.0309 1.2629 18 1 2.5864 3.0891 1.1049 19 6 1.2543 1.8439 2.3161 20 6 2.0532 1.9461 3.6418 21 7 3.3403 1.2839 3.3621 22 6 4.1677 0.7208 4.2965 23 1 5.0934 0.2571 3.9888 24 6 3.8170 0.7459 5.6394 25 7 2.6894 1.3115 6.0145 26 14 4.9455 -0.0230 6.9141 27 1 5.9083 0.9968 7.4022 28 1 4.1360 -0.5248 8.0533 29 1 5.6893 -1.1520 6.2999 30 6 3.5879 1.3275 1.9135 31 1 -0.3633 0.4225 -0.9368 32 1 -0.3634 -1.0226 0.1025 33 1 -0.3634 0.6001 0.8343 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.8182 3.3301 -3.4449 37 1 0.1615 2.8719 -2.9836 38 1 0.3233 2.6263 -5.3834 39 1 0.3184 0.9875 -4.6899 40 1 2.7297 2.5717 -5.6852 41 1 2.0871 1.0457 -6.3447 42 1 0.5125 2.6390 2.2413 43 1 0.7860 0.8644 2.2181 44 1 1.5268 1.4287 4.4439 45 1 2.2138 2.9916 3.9049 46 1 2.4440 1.3288 6.9528 47 1 3.6817 0.3143 1.5227 48 1 4.4981 1.8915 1.7098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033941174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:32 Heat of formation + Delta-G solvation = 85.586090 kcal Electronic energy + Delta-G solvation = -30247.495615 eV Core-core repulsion = 26340.190497 eV Total energy + Delta-G solvation = -3907.305119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.73457 -40.45155 -37.92755 -36.79783 -35.56258 -34.05718 -32.44108 -30.81373 -30.66341 -30.37924 -29.29664 -27.31608 -25.20919 -24.49944 -23.58708 -23.33950 -22.93079 -20.86921 -20.36306 -19.80892 -18.98407 -18.33234 -17.62538 -17.09482 -16.51221 -15.95307 -15.62457 -14.88522 -14.79623 -14.55942 -14.27952 -14.19268 -14.09912 -13.88844 -13.64773 -13.37920 -12.75114 -12.58908 -12.51612 -12.19693 -11.94296 -11.84704 -11.68893 -11.63769 -11.56072 -11.37820 -11.27896 -11.18247 -11.03242 -10.92631 -10.87626 -10.57757 -10.45618 -10.19535 -9.93194 -9.86411 -9.65948 -9.08514 -8.75513 -8.65106 -6.96279 -5.75823 -3.18578 1.27324 2.25327 2.36260 2.48070 2.83813 3.33933 3.39453 3.40734 3.89667 4.15621 4.23978 4.37085 4.41055 4.56966 4.62970 4.81426 4.87073 4.96426 4.97829 5.09705 5.17524 5.27768 5.29994 5.35162 5.40737 5.48800 5.53614 5.56480 5.59243 5.68049 5.68763 5.70178 5.73139 5.93746 5.98862 5.99766 6.07966 6.22750 6.37042 6.42840 6.54937 6.55870 6.78747 7.31190 7.38747 7.51587 7.72911 8.01208 8.22584 8.23852 9.10762 9.71151 10.34269 11.27896 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019952 B = 0.003109 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.050610 B = 9002.575227 C = 9695.964346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 N -0.597 5.597 4 C 0.512 3.488 5 O -0.525 6.525 6 C -0.036 4.036 7 H 0.115 0.885 8 C -0.104 4.104 9 C -0.117 4.117 10 C -0.035 4.035 11 C -0.007 4.007 12 N -0.259 5.259 13 N -0.081 5.081 14 N -0.378 5.378 15 H 0.448 0.552 16 C -0.002 4.002 17 C 0.126 3.874 18 H 0.103 0.897 19 C -0.154 4.154 20 C 0.153 3.847 21 N -0.601 5.601 22 C -0.226 4.226 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.921 5.921 26 Si 0.915 3.085 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.130 3.870 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.014 0.986 46 H 0.253 0.747 47 H 0.023 0.977 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 -1.572 -19.374 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.027 4.027 3 N -0.329 5.329 4 C 0.298 3.702 5 O -0.400 6.400 6 C -0.059 4.059 7 H 0.132 0.868 8 C -0.142 4.142 9 C -0.155 4.155 10 C -0.074 4.074 11 C -0.147 4.147 12 N -0.124 5.124 13 N -0.060 5.060 14 N -0.097 5.097 15 H 0.295 0.705 16 C -0.139 4.139 17 C 0.023 3.977 18 H 0.121 0.879 19 C -0.193 4.193 20 C 0.028 3.972 21 N -0.327 5.327 22 C -0.354 4.354 23 H 0.095 0.905 24 C -0.204 4.204 25 N -0.569 5.569 26 Si 0.746 3.254 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.207 1.207 30 C 0.003 3.997 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.128 0.872 45 H 0.032 0.968 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.661 -1.800 -19.653 21.170 hybrid contribution -0.137 -0.097 1.790 1.798 sum -7.798 -1.897 -17.863 19.583 Atomic orbital electron populations 1.22413 0.95142 1.03033 1.02962 1.21613 0.95319 0.82642 1.03078 1.48136 1.64226 1.13907 1.06671 1.20353 0.79048 0.86173 0.84660 1.90717 1.43496 1.19570 1.86221 1.20131 0.93816 0.98778 0.93211 0.86773 1.21544 1.02210 0.96905 0.93574 1.21650 0.96483 1.01803 0.95598 1.20015 0.92920 0.98805 0.95658 1.21693 0.96885 1.03055 0.93027 1.74840 1.10417 1.10225 1.16966 1.78605 1.15731 1.20781 0.90849 1.44839 1.18207 1.34038 1.12636 0.70536 1.21336 0.96114 1.01467 0.94939 1.22313 0.96326 0.97833 0.81233 0.87893 1.23529 0.97031 1.01168 0.97611 1.21990 0.85719 0.96348 0.93135 1.44413 1.21510 1.67047 0.99757 1.19055 1.00342 1.29478 0.86512 0.90480 1.24787 0.97807 1.00865 0.96930 1.69767 1.22794 1.49003 1.15369 0.86062 0.79495 0.78744 0.81125 1.21529 1.21571 1.20667 1.21525 0.94669 0.96793 0.86754 0.92522 0.91207 0.90616 0.92172 0.88299 0.89431 0.90008 0.89905 0.91198 0.89557 0.89495 0.91938 0.91096 0.87173 0.96755 0.93597 0.95903 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.66 37.16 0.36 -1.16 16 2 C 0.10 0.99 4.63 -4.04 -0.02 0.97 16 3 N -0.60 -7.79 2.48 -164.02 -0.41 -8.20 16 4 C 0.51 6.81 6.60 -10.98 -0.07 6.74 16 5 O -0.52 -9.04 15.47 5.56 0.09 -8.95 16 6 C -0.04 -0.35 2.07 -92.82 -0.19 -0.54 16 7 H 0.11 0.87 4.89 -51.93 -0.25 0.61 16 8 C -0.10 -0.87 5.05 -26.49 -0.13 -1.00 16 9 C -0.12 -0.72 5.90 -26.45 -0.16 -0.88 16 10 C -0.03 -0.28 6.30 -27.72 -0.17 -0.45 16 11 C -0.01 -0.08 7.11 -83.12 -0.59 -0.67 16 12 N -0.26 -3.68 12.40 33.16 0.41 -3.27 16 13 N -0.08 -1.14 13.40 60.35 0.81 -0.33 16 14 N -0.38 -4.50 6.68 33.39 0.22 -4.28 16 15 H 0.45 4.60 8.17 -190.07 -1.55 3.05 16 16 C 0.00 -0.03 6.14 -82.50 -0.51 -0.53 16 17 C 0.13 2.12 3.29 -66.09 -0.22 1.90 16 18 H 0.10 1.92 7.06 -51.93 -0.37 1.55 16 19 C -0.15 -2.64 5.95 -24.47 -0.15 -2.79 16 20 C 0.15 3.50 5.89 -2.42 -0.01 3.49 16 21 N -0.60 -14.65 3.40 -169.94 -0.58 -15.22 16 22 C -0.23 -6.07 10.27 -15.06 -0.15 -6.23 16 23 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 24 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 25 N -0.92 -25.86 10.09 55.49 0.56 -25.30 16 26 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 C 0.13 2.59 6.77 -3.06 -0.02 2.57 16 31 H 0.06 0.41 6.44 -51.93 -0.33 0.07 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.76 5.98 -51.93 -0.31 0.45 16 34 H 0.06 0.49 5.70 -51.93 -0.30 0.20 16 35 H 0.10 1.17 6.70 -51.93 -0.35 0.82 16 36 H 0.09 0.91 7.46 -51.93 -0.39 0.52 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.13 5.22 -51.93 -0.27 0.86 16 44 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.02 0.43 6.83 -51.93 -0.35 0.08 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -32.64 365.63 -8.67 -41.31 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.13 Total: 1.16 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.14 Total: 1.09 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 1.02 Total: -56.60 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.64 -8.67 -41.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033941174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.900 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds