Wall clock time and date at job start Tue Mar 31 2020 18:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46854 * 2 1 4 4 C 1.34777 * 119.99942 * 82.79501 * 3 2 1 5 5 O 1.21557 * 120.00341 * 184.33262 * 4 3 2 6 6 C 1.47859 * 119.99860 * 4.33513 * 4 3 2 7 7 C 1.40071 * 120.09537 * 173.37877 * 6 4 3 8 8 C 1.38292 * 117.99440 * 179.97438 * 7 6 4 9 9 C 1.39605 * 118.02574 * 0.25368 * 8 7 6 10 10 N 1.38507 * 120.04629 * 179.74676 * 9 8 7 11 11 C 1.46504 * 119.99936 * 4.99788 * 10 9 8 12 12 C 1.46497 * 119.99908 * 185.00230 * 10 9 8 13 13 N 1.32854 * 119.90211 * 359.48438 * 9 8 7 14 14 N 1.28354 * 122.16522 * 0.53567 * 13 9 8 15 15 C 1.46497 * 120.00223 * 262.79325 * 3 2 1 16 16 H 1.08998 * 110.88783 * 10.16545 * 15 3 2 17 17 C 1.55152 * 111.00478 * 246.28184 * 15 3 2 18 18 C 1.54319 * 102.94455 * 277.42621 * 17 15 3 19 19 N 1.47015 * 107.27265 * 337.81123 * 18 17 15 20 20 C 1.36944 * 125.65124 * 178.98658 * 19 18 17 21 21 H 1.07998 * 120.00055 * 185.12309 * 20 19 18 22 22 C 1.38810 * 119.99639 * 5.12869 * 20 19 18 23 23 N 1.31620 * 120.00174 * 5.16469 * 22 20 19 24 24 Si 1.86804 * 119.99678 * 185.16784 * 22 20 19 25 25 H 1.48502 * 109.47160 * 94.99574 * 24 22 20 26 26 H 1.48500 * 109.46882 * 214.99341 * 24 22 20 27 27 H 1.48494 * 109.47025 * 334.99555 * 24 22 20 28 28 C 1.47428 * 108.70330 * 358.93684 * 19 18 17 29 29 H 1.08997 * 109.46996 * 59.99832 * 1 2 3 30 30 H 1.09002 * 109.46461 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46997 * 299.99512 * 1 2 3 32 32 H 1.08996 * 109.47431 * 240.00329 * 2 1 3 33 33 H 1.08995 * 109.47724 * 120.00065 * 2 1 3 34 34 H 1.07998 * 121.00601 * 359.95782 * 7 6 4 35 35 H 1.07992 * 120.98666 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.46669 * 90.00086 * 11 10 9 37 37 H 1.08996 * 109.47060 * 210.00276 * 11 10 9 38 38 H 1.09001 * 109.46982 * 330.00096 * 11 10 9 39 39 H 1.09003 * 109.46932 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.47313 * 120.00181 * 12 10 9 41 41 H 1.08996 * 109.46875 * 240.00059 * 12 10 9 42 42 H 1.08999 * 110.72109 * 35.79524 * 17 15 3 43 43 H 1.09003 * 110.71716 * 159.06567 * 17 15 3 44 44 H 1.09003 * 109.88062 * 97.22877 * 18 17 15 45 45 H 1.09003 * 109.88483 * 218.38858 * 18 17 15 46 46 H 0.96996 * 120.00055 * 180.02562 * 23 22 20 47 47 H 1.09004 * 110.36786 * 265.28939 * 28 19 18 48 48 H 1.08995 * 110.36708 * 142.96977 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1049 2.0654 1.1580 5 8 2.4346 3.2354 1.1496 6 6 1.7989 1.3928 2.4387 7 6 2.0206 2.0573 3.6516 8 6 1.7187 1.3877 4.8233 9 6 1.2167 0.0887 4.7258 10 7 0.9052 -0.6224 5.8728 11 6 0.9982 0.0248 7.1838 12 6 0.4828 -2.0218 5.7751 13 7 1.0331 -0.4625 3.5309 14 7 1.3127 0.1574 2.4423 15 6 2.4125 2.0189 -1.2587 16 1 2.1189 1.4081 -2.1123 17 6 3.9362 2.3103 -1.2811 18 6 4.0452 3.6404 -0.5062 19 7 2.7292 4.2924 -0.5709 20 6 2.4013 5.4880 0.0108 21 1 1.3824 5.8444 -0.0247 22 6 3.3785 6.2419 0.6460 23 7 4.6371 5.8592 0.6020 24 14 2.9073 7.7994 1.5633 25 1 2.7144 7.4873 3.0023 26 1 3.9884 8.8068 1.4160 27 1 1.6448 8.3423 1.0009 28 6 1.8211 3.4466 -1.3668 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.4157 3.0622 3.6712 35 1 1.8712 1.8540 5.7853 36 1 0.0419 0.4865 7.4297 37 1 1.2473 -0.7198 7.9398 38 1 1.7747 0.7894 7.1573 39 1 0.4734 -2.3262 4.7285 40 1 1.1783 -2.6509 6.3307 41 1 -0.5179 -2.1292 6.1934 42 1 4.4875 1.5204 -0.7710 43 1 4.2909 2.4303 -2.3048 44 1 4.3107 3.4435 0.5325 45 1 4.7983 4.2784 -0.9688 46 1 5.3199 6.3858 1.0462 47 1 1.8103 3.7750 -2.4062 48 1 0.8147 3.4729 -0.9493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034012702.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:54 Heat of formation + Delta-G solvation = 141.964161 kcal Electronic energy + Delta-G solvation = -30697.337367 eV Core-core repulsion = 26792.476985 eV Total energy + Delta-G solvation = -3904.860382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.04311 -39.49054 -37.27871 -35.95572 -35.16048 -32.90860 -32.21811 -31.16760 -29.78492 -28.71483 -28.65289 -27.15398 -26.02931 -24.39273 -24.18161 -22.98993 -22.31922 -21.07328 -19.76690 -18.76912 -17.55637 -17.46618 -16.82417 -16.28951 -15.79482 -15.39776 -15.06027 -14.76448 -14.46766 -14.42327 -14.22110 -13.78459 -13.59143 -13.51292 -13.21370 -12.93535 -12.83202 -12.44022 -12.21088 -11.99421 -11.84577 -11.75037 -11.59974 -11.53717 -11.20068 -10.84512 -10.69304 -10.66790 -10.55345 -10.29505 -10.09301 -9.90993 -9.79629 -9.62131 -9.35514 -9.29277 -8.71108 -8.32231 -7.94281 -7.69851 -6.18226 -5.35671 -2.60756 0.91142 1.03960 2.58822 3.31660 3.54429 3.55795 3.60764 3.62431 4.17842 4.29538 4.48444 4.70889 4.76174 4.77239 4.87400 5.00586 5.14750 5.17448 5.28984 5.32614 5.43586 5.53179 5.58322 5.62434 5.73057 5.76918 5.84717 5.88106 5.97523 5.99145 6.06433 6.12899 6.22857 6.36706 6.45194 6.64990 6.68441 6.74017 6.74247 6.76850 6.87260 6.95945 7.46082 7.84190 7.98848 8.10286 8.17705 8.60965 8.81784 9.16666 9.56700 10.18841 10.86317 11.76856 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.004435 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.306175 B = 6311.286774 C = 7992.073341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.103 3.897 3 N -0.596 5.596 4 C 0.522 3.478 5 O -0.402 6.402 6 C -0.014 4.014 7 C -0.022 4.022 8 C -0.193 4.193 9 C 0.345 3.655 10 N -0.607 5.607 11 C 0.090 3.910 12 C 0.092 3.908 13 N -0.319 5.319 14 N -0.167 5.167 15 C 0.133 3.867 16 H 0.083 0.917 17 C -0.160 4.160 18 C 0.190 3.810 19 N -0.565 5.565 20 C -0.181 4.181 21 H 0.065 0.935 22 C -0.012 4.012 23 N -0.925 5.925 24 Si 0.898 3.102 25 H -0.296 1.296 26 H -0.296 1.296 27 H -0.286 1.286 28 C 0.131 3.869 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.162 0.838 35 H 0.148 0.852 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.044 0.956 46 H 0.243 0.757 47 H 0.022 0.978 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -17.367 8.712 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 N -0.332 5.332 4 C 0.304 3.696 5 O -0.266 6.266 6 C -0.165 4.165 7 C -0.051 4.051 8 C -0.226 4.226 9 C 0.106 3.894 10 N -0.322 5.322 11 C -0.053 4.053 12 C -0.051 4.051 13 N -0.172 5.172 14 N -0.014 5.014 15 C 0.029 3.971 16 H 0.101 0.899 17 C -0.200 4.200 18 C 0.065 3.935 19 N -0.290 5.290 20 C -0.310 4.310 21 H 0.083 0.917 22 C -0.206 4.206 23 N -0.575 5.575 24 Si 0.731 3.269 25 H -0.224 1.224 26 H -0.223 1.223 27 H -0.212 1.212 28 C 0.003 3.997 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.180 0.820 35 H 0.165 0.835 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.040 0.960 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.122 -17.868 8.144 20.889 hybrid contribution 0.097 1.861 1.646 2.487 sum -7.025 -16.007 9.791 20.036 Atomic orbital electron populations 1.22008 0.96604 1.01054 1.01215 1.21927 0.94265 0.82773 1.03060 1.47621 1.65993 1.13658 1.05974 1.17948 0.81751 0.87599 0.82325 1.91660 1.39341 1.11564 1.84024 1.23160 1.03107 0.93454 0.96740 1.22285 0.91214 1.01144 0.90421 1.21785 1.05514 0.94797 1.00473 1.20053 0.90579 0.89698 0.89060 1.45984 1.71337 1.11998 1.02895 1.21771 1.01992 0.98592 0.82931 1.21702 0.98805 0.80041 1.04575 1.73060 1.20569 1.29852 0.93697 1.73399 1.04985 1.06016 1.16964 1.22312 0.95596 0.94773 0.84459 0.89860 1.23384 0.94754 1.00999 1.00820 1.21099 0.88040 0.87285 0.97052 1.44100 1.07051 1.20118 1.57727 1.18800 0.93244 0.92705 1.26241 0.91670 1.24532 0.95435 0.98472 1.02162 1.69951 0.99028 1.39556 1.48979 0.86276 0.76802 0.83697 0.80157 1.22413 1.22327 1.21185 1.21754 0.94423 0.88804 0.94714 0.93578 0.92493 0.92835 0.92063 0.87602 0.82035 0.83482 0.92635 0.90727 0.90859 0.88825 0.92716 0.92733 0.92499 0.91889 0.94031 0.93839 0.94624 0.96023 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.61 37.16 0.36 -1.69 16 2 C 0.10 1.49 5.70 -4.04 -0.02 1.47 16 3 N -0.60 -10.61 2.58 -164.78 -0.42 -11.03 16 4 C 0.52 10.63 7.05 -12.32 -0.09 10.54 16 5 O -0.40 -9.93 8.36 5.32 0.04 -9.88 16 6 C -0.01 -0.24 6.60 -82.84 -0.55 -0.79 16 7 C -0.02 -0.35 9.71 -38.87 -0.38 -0.73 16 8 C -0.19 -2.51 9.33 -39.05 -0.36 -2.87 16 9 C 0.35 4.53 7.44 -154.94 -1.15 3.37 16 10 N -0.61 -6.01 3.38 -189.55 -0.64 -6.65 16 11 C 0.09 0.60 10.33 59.85 0.62 1.21 16 12 C 0.09 0.73 10.71 59.85 0.64 1.37 16 13 N -0.32 -4.74 10.03 31.21 0.31 -4.43 16 14 N -0.17 -2.69 5.65 33.32 0.19 -2.50 16 15 C 0.13 2.43 3.77 -65.79 -0.25 2.18 16 16 H 0.08 1.26 7.89 -51.93 -0.41 0.85 16 17 C -0.16 -3.16 6.52 -24.90 -0.16 -3.32 16 18 C 0.19 4.84 4.24 -3.07 -0.01 4.83 16 19 N -0.56 -14.92 1.73 -170.08 -0.29 -15.22 16 20 C -0.18 -5.27 8.74 -15.06 -0.13 -5.40 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.34 5.46 -17.43 -0.10 -0.44 16 23 N -0.92 -28.41 10.41 55.49 0.58 -27.83 16 24 Si 0.90 23.34 29.56 -169.99 -5.02 18.32 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 C 0.13 2.86 6.19 -2.53 -0.02 2.84 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.84 6.88 -51.93 -0.36 0.48 16 32 H 0.06 0.76 7.90 -51.93 -0.41 0.35 16 33 H 0.11 1.60 5.16 -54.64 -0.28 1.32 16 34 H 0.16 2.78 7.73 -52.49 -0.41 2.37 16 35 H 0.15 1.45 6.11 -52.49 -0.32 1.13 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 38 H 0.07 0.45 6.01 -51.93 -0.31 0.14 16 39 H 0.09 0.89 6.83 -51.93 -0.35 0.53 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.04 1.19 6.25 -51.93 -0.32 0.87 16 45 H 0.04 1.25 7.10 -51.93 -0.37 0.88 16 46 H 0.24 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -34.71 369.77 -8.60 -43.31 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -7.32 Total: -2.23 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: -1.60 Total: 12.57 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.28 Total: -67.67 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.04 Total: -9.88 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.71 -8.60 -43.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034012702.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.279 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds