Wall clock time and date at job start Tue Mar 31 2020 17:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47374 * 2 1 4 4 C 1.35317 * 125.86568 * 124.99940 * 3 2 1 5 5 C 1.35353 * 106.17236 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.74838 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46900 * 125.00551 * 6 5 4 8 8 O 1.21287 * 119.99950 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00028 * 179.97438 * 7 6 5 10 10 C 1.46527 * 120.97885 * 0.02562 * 9 7 6 11 11 C 1.51785 * 110.13688 * 233.77112 * 10 9 7 12 12 C 1.49508 * 115.07424 * 318.39647 * 11 10 9 13 13 H 1.09002 * 105.92561 * 156.44891 * 12 11 10 14 14 C 1.52675 * 116.96696 * 40.04363 * 12 11 10 15 15 H 1.08999 * 112.03262 * 82.84877 * 14 12 11 16 16 C 1.56114 * 101.71616 * 202.84482 * 14 12 11 17 17 C 1.55097 * 101.08346 * 37.84408 * 16 14 12 18 18 N 1.46253 * 114.18002 * 272.08716 * 12 11 10 19 19 C 1.36929 * 125.96033 * 315.56743 * 18 12 11 20 20 H 1.08001 * 120.00246 * 349.54122 * 19 18 12 21 21 C 1.38823 * 120.00120 * 169.53913 * 19 18 12 22 22 N 1.31614 * 119.99679 * 350.24758 * 21 19 18 23 23 Si 1.86797 * 119.99903 * 170.24865 * 21 19 18 24 24 H 1.48493 * 109.47371 * 94.47133 * 23 21 19 25 25 H 1.48504 * 109.46820 * 214.47190 * 23 21 19 26 26 H 1.48504 * 109.47356 * 334.46711 * 23 21 19 27 27 C 1.46694 * 120.97736 * 179.72492 * 9 7 6 28 28 N 1.33773 * 106.49802 * 0.27047 * 5 4 3 29 29 N 1.28632 * 108.88655 * 359.55571 * 28 5 4 30 30 H 1.09000 * 109.47112 * 59.99814 * 1 2 3 31 31 H 1.08998 * 109.47779 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46605 * 299.99816 * 1 2 3 33 33 H 1.09001 * 109.46605 * 240.00184 * 2 1 3 34 34 H 1.08998 * 109.46766 * 120.00601 * 2 1 3 35 35 H 1.07991 * 126.91291 * 0.02562 * 4 3 2 36 36 H 1.08999 * 109.47278 * 245.00587 * 6 5 4 37 37 H 1.08999 * 109.47608 * 5.00842 * 6 5 4 38 38 H 1.09001 * 109.35735 * 353.97222 * 10 9 7 39 39 H 1.09000 * 109.35925 * 113.56594 * 10 9 7 40 40 H 1.09002 * 108.36179 * 79.84780 * 11 10 9 41 41 H 1.09004 * 108.36169 * 197.12410 * 11 10 9 42 42 H 1.09003 * 111.10006 * 279.88937 * 16 14 12 43 43 H 1.09000 * 111.13919 * 155.81205 * 16 14 12 44 44 H 1.09002 * 110.35521 * 204.07988 * 17 16 14 45 45 H 1.08998 * 110.44083 * 81.84851 * 17 16 14 46 46 H 0.96994 * 119.99779 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.52701 * 241.07685 * 27 9 7 48 48 H 1.09005 * 109.52656 * 1.28218 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8757 1.9189 0.8983 5 6 3.0543 3.2074 0.5243 6 6 3.9232 4.2322 1.2069 7 6 4.8953 4.8101 0.2108 8 8 4.8833 4.4277 -0.9402 9 7 5.7773 5.7525 0.5987 10 6 5.8101 6.2303 1.9835 11 6 5.6932 7.7433 2.0171 12 6 6.4869 8.4634 0.9746 13 1 5.9989 9.4290 0.8411 14 6 6.5196 7.8447 -0.4208 15 1 5.6418 8.1139 -1.0082 16 6 7.8314 8.4549 -1.0075 17 6 8.7509 8.4416 0.2415 18 7 7.8599 8.7712 1.3733 19 6 8.2513 9.2773 2.5840 20 1 7.5118 9.6420 3.2814 21 6 9.5988 9.3214 2.9149 22 7 10.4829 8.7074 2.1575 23 14 10.1571 10.2521 4.4352 24 1 10.2588 9.3131 5.5810 25 1 11.4846 10.8668 4.1796 26 1 9.1719 11.3167 4.7536 27 6 6.7370 6.3252 -0.3515 28 7 2.3028 3.3941 -0.5665 29 7 1.7061 2.2916 -0.8547 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.3272 1.4201 1.7430 36 1 3.2977 5.0293 1.6086 37 1 4.4742 3.7584 2.0193 38 1 4.9800 5.7914 2.5370 39 1 6.7498 5.9301 2.4471 40 1 4.6433 8.0094 1.8941 41 1 6.0216 8.0914 2.9964 42 1 7.6664 9.4722 -1.3625 43 1 8.2371 7.8262 -1.8001 44 1 9.5338 9.1937 0.1438 45 1 9.1904 7.4539 0.3802 46 1 11.4243 8.7379 2.3890 47 1 7.7523 6.1142 -0.0157 48 1 6.5796 5.8870 -1.3371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036778035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:39 Heat of formation + Delta-G solvation = 96.498087 kcal Electronic energy + Delta-G solvation = -29174.794887 eV Core-core repulsion = 25267.962948 eV Total energy + Delta-G solvation = -3906.831939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.33681 -40.01941 -38.17216 -35.76279 -35.05541 -33.04006 -32.48938 -31.68651 -31.07947 -29.55533 -28.47001 -27.35998 -25.09184 -24.94046 -23.89787 -22.53172 -22.04173 -21.31416 -20.13290 -19.43693 -18.08105 -17.47586 -17.03113 -16.44932 -16.33455 -15.74253 -15.34039 -15.04753 -14.83107 -14.69321 -14.40800 -13.94402 -13.89427 -13.60426 -13.17409 -13.06012 -12.86964 -12.70831 -12.47096 -12.13683 -12.04066 -12.03909 -11.69298 -11.57890 -11.34367 -11.21973 -10.94975 -10.79092 -10.74403 -10.48785 -10.16492 -10.13017 -10.04064 -9.84286 -9.67465 -9.62430 -9.57002 -9.15205 -8.58065 -8.13588 -6.76739 -5.76250 -3.07913 1.48049 2.14619 2.48692 2.92142 3.36677 3.38841 3.44121 3.45536 4.00123 4.24432 4.34731 4.47520 4.58924 4.63750 4.71751 4.96574 5.04067 5.11272 5.18937 5.25460 5.30541 5.33263 5.41097 5.50406 5.54131 5.57200 5.59123 5.75231 5.80906 5.90447 5.98846 6.03201 6.17691 6.30390 6.37327 6.39182 6.44619 6.46913 6.64302 6.72087 6.82197 6.99254 7.04837 7.51328 7.59394 7.77352 7.79686 8.25379 8.49091 8.49781 9.17885 9.81464 10.51637 11.36921 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.002436 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.577868 B =11493.605673 C =12045.501322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.296 5.296 4 C -0.049 4.049 5 C -0.001 4.001 6 C -0.054 4.054 7 C 0.517 3.483 8 O -0.534 6.534 9 N -0.605 5.605 10 C 0.116 3.884 11 C -0.135 4.135 12 C 0.171 3.829 13 H 0.007 0.993 14 C -0.105 4.105 15 H 0.077 0.923 16 C -0.144 4.144 17 C 0.173 3.827 18 N -0.591 5.591 19 C -0.225 4.225 20 H 0.075 0.925 21 C -0.006 4.006 22 N -0.915 5.915 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.123 3.877 28 N -0.238 5.238 29 N -0.088 5.088 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.189 0.811 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.030 0.970 46 H 0.252 0.748 47 H 0.077 0.923 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.903 -16.500 0.064 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.090 5.090 4 C -0.200 4.200 5 C -0.140 4.140 6 C -0.096 4.096 7 C 0.303 3.697 8 O -0.410 6.410 9 N -0.337 5.337 10 C -0.006 4.006 11 C -0.175 4.175 12 C 0.064 3.936 13 H 0.025 0.975 14 C -0.125 4.125 15 H 0.095 0.905 16 C -0.184 4.184 17 C 0.048 3.952 18 N -0.316 5.316 19 C -0.354 4.354 20 H 0.093 0.907 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.001 3.999 28 N -0.104 5.104 29 N -0.067 5.067 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.206 0.794 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.063 0.937 47 H 0.095 0.905 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.548 -16.361 -1.701 23.332 hybrid contribution 1.065 0.092 2.006 2.273 sum -15.483 -16.269 0.305 22.460 Atomic orbital electron populations 1.22078 0.92731 1.03607 1.04100 1.22058 0.96882 0.76714 1.05167 1.47410 1.30892 1.11980 1.18704 1.23287 1.00933 0.95462 1.00278 1.21274 1.02098 0.93957 0.96645 1.19927 0.95489 0.96917 0.97220 1.20200 0.81002 0.79539 0.88915 1.90711 1.70367 1.60502 1.19470 1.47961 1.34995 1.39283 1.11498 1.21320 1.02187 0.95626 0.81507 1.21219 0.99369 0.94182 1.02716 1.19463 0.88089 0.95189 0.90877 0.97506 1.22407 0.98500 0.94460 0.97148 0.90501 1.23276 0.96128 0.99701 0.99245 1.21461 0.91377 0.99441 0.82875 1.44516 1.00341 1.74001 1.12773 1.18903 0.91340 1.32462 0.92685 0.90686 1.24816 0.96268 1.00523 0.98651 1.69952 1.01201 1.45610 1.39435 0.86184 0.78055 0.79527 0.82463 1.21708 1.21714 1.20644 1.21751 0.92182 0.92622 0.93384 1.75127 1.07609 1.15548 1.12164 1.78288 1.21018 0.92816 1.14600 0.90611 0.89964 0.91734 0.88377 0.87752 0.79374 0.87193 0.87303 0.90823 0.90960 0.93194 0.89858 0.92028 0.91944 0.92027 0.95181 0.93746 0.90463 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.04 37.16 0.37 -0.39 16 2 C 0.11 0.58 7.17 -4.04 -0.03 0.55 16 3 N -0.30 -3.01 3.44 -61.27 -0.21 -3.22 16 4 C -0.05 -0.48 11.49 -17.04 -0.20 -0.67 16 5 C 0.00 -0.01 6.00 -82.78 -0.50 -0.51 16 6 C -0.05 -0.63 4.64 -29.04 -0.13 -0.76 16 7 C 0.52 8.30 7.70 -10.99 -0.08 8.22 16 8 O -0.53 -10.70 15.04 5.55 0.08 -10.61 16 9 N -0.60 -9.74 2.94 -173.84 -0.51 -10.25 16 10 C 0.12 1.72 6.39 -4.64 -0.03 1.69 16 11 C -0.13 -2.29 5.62 -29.07 -0.16 -2.45 16 12 C 0.17 3.43 2.63 -69.95 -0.18 3.24 16 13 H 0.01 0.15 8.06 -51.93 -0.42 -0.26 16 14 C -0.11 -1.91 3.70 -88.78 -0.33 -2.23 16 15 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 16 C -0.14 -2.71 6.46 -23.95 -0.15 -2.87 16 17 C 0.17 4.04 4.94 -2.24 -0.01 4.03 16 18 N -0.59 -14.21 3.32 -165.70 -0.55 -14.76 16 19 C -0.23 -5.92 9.37 -15.06 -0.14 -6.06 16 20 H 0.08 1.91 7.37 -52.49 -0.39 1.52 16 21 C -0.01 -0.15 5.41 -17.43 -0.09 -0.24 16 22 N -0.92 -26.00 10.76 55.49 0.60 -25.40 16 23 Si 0.91 21.37 29.56 -169.99 -5.03 16.34 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.12 2.17 5.57 -3.60 -0.02 2.15 16 28 N -0.24 -3.92 11.84 33.29 0.39 -3.52 16 29 N -0.09 -1.26 12.91 60.35 0.78 -0.48 16 30 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.22 8.07 -51.93 -0.42 -0.20 16 35 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.11 1.12 7.71 -51.93 -0.40 0.72 16 37 H 0.11 0.90 7.92 -51.93 -0.41 0.49 16 38 H 0.07 0.80 5.95 -51.93 -0.31 0.50 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.52 6.81 -51.93 -0.35 1.16 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.05 7.98 -51.93 -0.41 0.64 16 44 H 0.06 1.61 7.17 -51.93 -0.37 1.24 16 45 H 0.03 0.76 6.94 -51.93 -0.36 0.40 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.08 1.48 6.50 -51.93 -0.34 1.15 16 48 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -35.51 377.24 -7.94 -43.45 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.49 Total: -0.90 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.69 Total: 3.70 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.50 Total: -57.65 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.51 -7.94 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.944 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds