Wall clock time and date at job start Tue Mar 31 2020 17:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47374 * 2 1 4 4 C 1.35317 * 125.86568 * 124.99940 * 3 2 1 5 5 C 1.35353 * 106.17236 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.74838 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46900 * 125.00551 * 6 5 4 8 8 O 1.21287 * 119.99950 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00028 * 179.97438 * 7 6 5 10 10 C 1.46527 * 120.97885 * 0.02562 * 9 7 6 11 11 C 1.51785 * 110.13688 * 233.77112 * 10 9 7 12 12 C 1.49508 * 115.07424 * 318.39647 * 11 10 9 13 13 H 1.09002 * 105.92561 * 156.44891 * 12 11 10 14 14 C 1.52675 * 116.96696 * 40.04363 * 12 11 10 15 15 H 1.08999 * 112.03262 * 82.84877 * 14 12 11 16 16 C 1.56114 * 101.71616 * 202.84482 * 14 12 11 17 17 C 1.55097 * 101.08346 * 37.84408 * 16 14 12 18 18 N 1.46253 * 114.18002 * 272.08716 * 12 11 10 19 19 C 1.36929 * 125.96033 * 315.56743 * 18 12 11 20 20 H 1.08001 * 120.00246 * 349.54122 * 19 18 12 21 21 C 1.38823 * 120.00120 * 169.53913 * 19 18 12 22 22 N 1.31614 * 119.99679 * 350.24758 * 21 19 18 23 23 Si 1.86797 * 119.99903 * 170.24865 * 21 19 18 24 24 H 1.48493 * 109.47371 * 94.47133 * 23 21 19 25 25 H 1.48504 * 109.46820 * 214.47190 * 23 21 19 26 26 H 1.48504 * 109.47356 * 334.46711 * 23 21 19 27 27 C 1.46694 * 120.97736 * 179.72492 * 9 7 6 28 28 N 1.33773 * 106.49802 * 0.27047 * 5 4 3 29 29 N 1.28632 * 108.88655 * 359.55571 * 28 5 4 30 30 H 1.09000 * 109.47112 * 59.99814 * 1 2 3 31 31 H 1.08998 * 109.47779 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46605 * 299.99816 * 1 2 3 33 33 H 1.09001 * 109.46605 * 240.00184 * 2 1 3 34 34 H 1.08998 * 109.46766 * 120.00601 * 2 1 3 35 35 H 1.07991 * 126.91291 * 0.02562 * 4 3 2 36 36 H 1.08999 * 109.47278 * 245.00587 * 6 5 4 37 37 H 1.08999 * 109.47608 * 5.00842 * 6 5 4 38 38 H 1.09001 * 109.35735 * 353.97222 * 10 9 7 39 39 H 1.09000 * 109.35925 * 113.56594 * 10 9 7 40 40 H 1.09002 * 108.36179 * 79.84780 * 11 10 9 41 41 H 1.09004 * 108.36169 * 197.12410 * 11 10 9 42 42 H 1.09003 * 111.10006 * 279.88937 * 16 14 12 43 43 H 1.09000 * 111.13919 * 155.81205 * 16 14 12 44 44 H 1.09002 * 110.35521 * 204.07988 * 17 16 14 45 45 H 1.08998 * 110.44083 * 81.84851 * 17 16 14 46 46 H 0.96994 * 119.99779 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.52701 * 241.07685 * 27 9 7 48 48 H 1.09005 * 109.52656 * 1.28218 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8757 1.9189 0.8983 5 6 3.0543 3.2074 0.5243 6 6 3.9232 4.2322 1.2069 7 6 4.8953 4.8101 0.2108 8 8 4.8833 4.4277 -0.9402 9 7 5.7773 5.7525 0.5987 10 6 5.8101 6.2303 1.9835 11 6 5.6932 7.7433 2.0171 12 6 6.4869 8.4634 0.9746 13 1 5.9989 9.4290 0.8411 14 6 6.5196 7.8447 -0.4208 15 1 5.6418 8.1139 -1.0082 16 6 7.8314 8.4549 -1.0075 17 6 8.7509 8.4416 0.2415 18 7 7.8599 8.7712 1.3733 19 6 8.2513 9.2773 2.5840 20 1 7.5118 9.6420 3.2814 21 6 9.5988 9.3214 2.9149 22 7 10.4829 8.7074 2.1575 23 14 10.1571 10.2521 4.4352 24 1 10.2588 9.3131 5.5810 25 1 11.4846 10.8668 4.1796 26 1 9.1719 11.3167 4.7536 27 6 6.7370 6.3252 -0.3515 28 7 2.3028 3.3941 -0.5665 29 7 1.7061 2.2916 -0.8547 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.3272 1.4201 1.7430 36 1 3.2977 5.0293 1.6086 37 1 4.4742 3.7584 2.0193 38 1 4.9800 5.7914 2.5370 39 1 6.7498 5.9301 2.4471 40 1 4.6433 8.0094 1.8941 41 1 6.0216 8.0914 2.9964 42 1 7.6664 9.4722 -1.3625 43 1 8.2371 7.8262 -1.8001 44 1 9.5338 9.1937 0.1438 45 1 9.1904 7.4539 0.3802 46 1 11.4243 8.7379 2.3890 47 1 7.7523 6.1142 -0.0157 48 1 6.5796 5.8870 -1.3371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036778035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:37 Heat of formation + Delta-G solvation = 72.317657 kcal Electronic energy + Delta-G solvation = -29175.843429 eV Core-core repulsion = 25267.962948 eV Total energy + Delta-G solvation = -3907.880481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.15608 -41.39121 -39.65477 -36.60793 -36.34517 -34.64973 -33.60687 -33.21929 -31.69302 -31.19249 -29.76444 -28.71356 -26.73779 -25.59341 -25.44934 -23.97186 -22.86646 -22.17760 -21.91122 -20.69456 -19.52077 -18.48190 -18.13915 -17.96169 -17.24660 -17.08082 -16.74226 -16.39064 -16.10997 -15.68492 -15.57663 -15.32311 -14.97259 -14.78818 -14.45194 -14.31975 -13.95488 -13.79945 -13.57777 -13.32226 -13.28932 -13.06764 -12.95499 -12.84335 -12.69168 -12.56913 -12.46718 -12.27944 -12.12253 -11.94035 -11.63447 -11.59191 -11.51257 -11.46582 -11.25556 -10.93834 -10.78328 -10.60189 -10.06483 -9.50803 -8.73682 -7.81337 -5.14076 0.72908 1.49243 1.49544 1.51420 1.59957 1.62386 1.72448 2.18564 2.54047 3.34735 3.37689 3.57038 3.68413 3.79811 3.81868 3.94170 3.95383 4.00453 4.07092 4.24002 4.24159 4.31665 4.32792 4.45149 4.46710 4.58254 4.60065 4.62805 4.76220 4.77271 4.78528 4.83248 4.97759 5.02769 5.04199 5.12065 5.17257 5.18826 5.28864 5.41638 5.44463 5.54812 5.63553 5.66100 5.77843 5.79489 6.27191 6.56878 7.14341 7.27447 7.62367 7.84335 8.54053 9.31295 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.002436 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.577868 B =11493.605673 C =12045.501322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.027 4.027 5 C -0.032 4.032 6 C -0.046 4.046 7 C 0.514 3.486 8 O -0.579 6.579 9 N -0.605 5.605 10 C 0.121 3.879 11 C -0.133 4.133 12 C 0.166 3.834 13 H -0.003 1.003 14 C -0.095 4.095 15 H 0.092 0.908 16 C -0.132 4.132 17 C 0.181 3.819 18 N -0.608 5.608 19 C -0.226 4.226 20 H 0.083 0.917 21 C -0.064 4.064 22 N -0.948 5.948 23 Si 0.971 3.029 24 H -0.285 1.285 25 H -0.301 1.301 26 H -0.270 1.270 27 C 0.130 3.870 28 N -0.293 5.293 29 N -0.127 5.127 30 H 0.049 0.951 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.146 0.854 35 H 0.240 0.760 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.124 0.876 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.024 0.976 45 H 0.004 0.996 46 H 0.245 0.755 47 H 0.056 0.944 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.883 -18.329 2.194 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.083 5.083 4 C -0.179 4.179 5 C -0.172 4.172 6 C -0.087 4.087 7 C 0.304 3.696 8 O -0.458 6.458 9 N -0.337 5.337 10 C -0.001 4.001 11 C -0.173 4.173 12 C 0.059 3.941 13 H 0.015 0.985 14 C -0.115 4.115 15 H 0.110 0.890 16 C -0.171 4.171 17 C 0.056 3.944 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.100 0.900 21 C -0.257 4.257 22 N -0.597 5.597 23 Si 0.800 3.200 24 H -0.212 1.212 25 H -0.228 1.228 26 H -0.195 1.195 27 C 0.007 3.993 28 N -0.159 5.159 29 N -0.106 5.106 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.164 0.836 35 H 0.256 0.744 36 H 0.147 0.853 37 H 0.169 0.831 38 H 0.142 0.858 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.042 0.958 45 H 0.022 0.978 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.597 -18.197 0.426 26.023 hybrid contribution 1.633 0.591 1.317 2.179 sum -16.965 -17.607 1.743 24.512 Atomic orbital electron populations 1.22054 0.92540 1.04920 1.02559 1.22569 0.97134 0.74541 1.07527 1.47871 1.29970 1.12876 1.17562 1.24023 0.99148 0.94306 1.00402 1.21705 1.02859 0.95916 0.96756 1.20042 0.94602 0.97465 0.96556 1.21033 0.80846 0.78581 0.89182 1.90697 1.71559 1.61786 1.21789 1.48012 1.34655 1.39414 1.11633 1.21385 1.03406 0.94246 0.81022 1.21145 1.00081 0.95507 1.00560 1.19683 0.86170 0.95523 0.92697 0.98514 1.22357 0.98401 0.94560 0.96146 0.88956 1.23156 0.95584 1.00683 0.97678 1.21209 0.91482 0.96644 0.85035 1.44735 1.02109 1.74109 1.12321 1.19256 0.91539 1.31408 0.93288 0.89953 1.25576 0.96569 1.01967 1.01601 1.70149 1.00912 1.47407 1.41217 0.85180 0.77044 0.78446 0.79350 1.21233 1.22786 1.19504 1.21482 0.91783 0.92352 0.93714 1.75044 1.09386 1.17170 1.14298 1.78188 1.22467 0.93507 1.16447 0.93161 0.87178 0.92230 0.87740 0.83648 0.74404 0.85314 0.83106 0.85807 0.92798 0.90542 0.91081 0.91431 0.90020 0.95753 0.97795 0.94590 0.92570 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 10.04 71.98 0.72 -0.43 16 2 C 0.10 0.72 7.17 86.38 0.62 1.34 16 3 N -0.29 -5.22 3.44 -347.75 -1.20 -6.42 16 4 C -0.03 -0.42 11.49 83.49 0.96 0.54 16 5 C -0.03 -0.78 6.00 41.60 0.25 -0.53 16 6 C -0.05 -0.90 4.64 29.10 0.13 -0.76 16 7 C 0.51 15.56 7.70 87.66 0.67 16.23 16 8 O -0.58 -23.02 15.04 -3.05 -0.05 -23.06 16 9 N -0.61 -18.46 2.94 -822.29 -2.41 -20.87 16 10 C 0.12 3.26 6.39 85.97 0.55 3.80 16 11 C -0.13 -4.23 5.62 29.08 0.16 -4.07 16 12 C 0.17 6.51 2.63 43.81 0.12 6.62 16 13 H 0.00 -0.12 8.06 -2.39 -0.02 -0.14 16 14 C -0.09 -3.37 3.70 -9.60 -0.04 -3.41 16 15 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 16 C -0.13 -4.99 6.46 32.39 0.21 -4.78 16 17 C 0.18 8.80 4.94 86.85 0.43 9.23 16 18 N -0.61 -29.63 3.32 -678.15 -2.25 -31.88 16 19 C -0.23 -11.94 9.37 84.04 0.79 -11.15 16 20 H 0.08 4.14 7.37 -2.91 -0.02 4.12 16 21 C -0.06 -3.51 5.41 84.87 0.46 -3.05 16 22 N -0.95 -55.80 10.76 21.65 0.23 -55.57 16 23 Si 0.97 44.46 29.56 68.60 2.03 46.49 16 24 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C 0.13 4.57 5.57 86.56 0.48 5.05 16 28 N -0.29 -9.56 11.84 -48.60 -0.58 -10.14 16 29 N -0.13 -3.62 12.91 37.02 0.48 -3.14 16 30 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 31 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 34 H 0.15 -0.13 8.07 -2.39 -0.02 -0.15 16 35 H 0.24 1.01 8.06 -2.92 -0.02 0.98 16 36 H 0.13 2.05 7.71 -2.39 -0.02 2.03 16 37 H 0.15 1.64 7.92 -2.39 -0.02 1.62 16 38 H 0.12 2.09 5.95 -2.39 -0.01 2.07 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 2.46 6.81 -2.38 -0.02 2.45 16 42 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.08 2.76 7.98 -2.39 -0.02 2.74 16 44 H 0.02 1.33 7.17 -2.39 -0.02 1.32 16 45 H 0.00 0.22 6.94 -2.39 -0.02 0.20 16 46 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 47 H 0.06 2.21 6.50 -2.39 -0.02 2.20 16 48 H 0.08 2.83 7.00 -2.38 -0.02 2.81 16 Total: -1.00 -83.62 377.24 3.74 -79.88 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.96 Total: 10.08 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.52 Total: 14.64 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -5.72 Total: -128.02 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.05 Total: -23.06 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -83.62 3.74 -79.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.201 kcal (2) G-P(sol) polarization free energy of solvation -83.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds