Wall clock time and date at job start Tue Mar 31 2020 17:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47040 * 2 1 4 4 C 1.35312 * 125.86582 * 124.99824 * 3 2 1 5 5 C 1.35359 * 106.17441 * 179.77310 * 4 3 2 6 6 C 1.50700 * 126.74967 * 180.21133 * 5 4 3 7 7 C 1.50701 * 109.47285 * 125.00029 * 6 5 4 8 8 O 1.21281 * 119.99580 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99924 * 179.97438 * 7 6 5 10 10 C 1.46597 * 119.69031 * 359.72978 * 9 7 6 11 11 C 1.54346 * 110.36704 * 132.10910 * 10 9 7 12 12 C 1.51521 * 107.26759 * 51.30546 * 11 10 9 13 13 H 1.09000 * 108.81406 * 53.32104 * 12 11 10 14 14 C 1.55357 * 107.79017 * 295.01197 * 12 11 10 15 15 H 1.09008 * 111.50538 * 309.60205 * 14 12 11 16 16 C 1.53740 * 100.22496 * 190.93150 * 14 12 11 17 17 C 1.55289 * 101.84300 * 39.09398 * 16 14 12 18 18 N 1.45481 * 117.34049 * 177.97257 * 12 11 10 19 19 C 1.36929 * 126.40400 * 329.38527 * 18 12 11 20 20 H 1.08001 * 120.00423 * 0.02562 * 19 18 12 21 21 C 1.38815 * 120.00226 * 179.97438 * 19 18 12 22 22 N 1.31622 * 119.99331 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00570 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46934 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47158 * 119.99841 * 23 21 19 26 26 H 1.48496 * 109.47254 * 240.00081 * 23 21 19 27 27 C 1.47725 * 119.68761 * 179.97438 * 9 7 6 28 28 N 1.33772 * 106.49554 * 0.22938 * 5 4 3 29 29 N 1.28640 * 108.88426 * 359.97438 * 28 5 4 30 30 H 1.09005 * 109.47204 * 59.99535 * 1 2 3 31 31 H 1.08995 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46938 * 299.99969 * 1 2 3 33 33 H 1.08994 * 109.47014 * 240.00337 * 2 1 3 34 34 H 1.08995 * 109.47162 * 120.00455 * 2 1 3 35 35 H 1.08002 * 126.91567 * 0.04325 * 4 3 2 36 36 H 1.09005 * 109.46571 * 244.99990 * 6 5 4 37 37 H 1.09003 * 109.47227 * 4.99774 * 6 5 4 38 38 H 1.08997 * 109.25861 * 252.47549 * 10 9 7 39 39 H 1.08998 * 109.25268 * 11.90819 * 10 9 7 40 40 H 1.09001 * 110.03033 * 291.80616 * 11 10 9 41 41 H 1.09000 * 109.80564 * 170.67662 * 11 10 9 42 42 H 1.08999 * 110.95983 * 157.23450 * 16 14 12 43 43 H 1.09007 * 110.95477 * 280.95742 * 16 14 12 44 44 H 1.09002 * 109.91993 * 218.17643 * 17 16 14 45 45 H 1.09001 * 110.09012 * 96.96250 * 17 16 14 46 46 H 0.97007 * 119.99848 * 180.02562 * 22 21 19 47 47 H 1.09007 * 110.06587 * 351.26027 * 27 9 7 48 48 H 1.09003 * 110.06548 * 112.71944 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9190 0.8983 5 6 3.0577 3.2064 0.5217 6 6 3.9318 4.2293 1.2004 7 6 4.9035 4.8021 0.2010 8 8 4.8880 4.4172 -0.9490 9 7 5.7896 5.7421 0.5852 10 6 5.7983 6.2066 1.9756 11 6 7.2384 6.2120 2.5311 12 6 8.0989 6.9724 1.5426 13 1 7.6468 7.9472 1.3599 14 6 8.1246 6.1644 0.2159 15 1 8.3792 5.1188 0.3897 16 6 9.2387 6.9103 -0.5364 17 6 10.2554 7.1968 0.6019 18 7 9.5034 7.1499 1.8777 19 6 10.0317 7.2537 3.1367 20 1 9.3842 7.2047 3.9998 21 6 11.3995 7.4208 3.3040 22 7 12.1886 7.4800 2.2522 23 14 12.1203 7.5617 5.0214 24 1 11.0302 7.4647 6.0252 25 1 13.0941 6.4623 5.2413 26 1 12.8096 8.8693 5.1633 27 6 6.7394 6.2984 -0.4000 28 7 2.3089 3.3920 -0.5711 29 7 1.7036 2.2924 -0.8528 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.3274 1.4202 1.7430 36 1 3.3099 5.0293 1.6022 37 1 4.4831 3.7549 2.0123 38 1 5.3888 7.2157 2.0200 39 1 5.1814 5.5421 2.5804 40 1 7.6037 5.1900 2.6313 41 1 7.2585 6.7105 3.5002 42 1 9.6820 6.2769 -1.3047 43 1 8.8640 7.8389 -0.9672 44 1 10.6958 8.1847 0.4666 45 1 11.0383 6.4385 0.6042 46 1 13.1446 7.5964 2.3690 47 1 6.6874 5.7328 -1.3304 48 1 6.5118 7.3478 -0.5876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036778038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:53 Heat of formation + Delta-G solvation = 97.222260 kcal Electronic energy + Delta-G solvation = -28875.678022 eV Core-core repulsion = 24968.877486 eV Total energy + Delta-G solvation = -3906.800536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.38412 -40.13327 -38.20998 -35.81041 -35.27401 -33.08534 -32.45906 -31.50022 -31.11613 -29.84361 -28.59016 -27.52213 -24.98787 -24.86257 -23.47926 -22.37217 -22.05659 -21.31309 -20.06215 -19.70766 -18.77485 -17.52838 -17.19103 -16.58111 -16.21405 -15.69478 -15.50568 -14.98038 -14.88830 -14.78809 -14.35665 -13.95836 -13.82326 -13.69072 -13.34997 -13.07093 -12.83653 -12.74081 -12.60532 -12.38943 -12.22158 -12.07206 -11.65846 -11.58890 -11.43610 -11.37474 -10.85534 -10.83824 -10.79825 -10.70288 -10.18156 -10.12672 -10.06097 -9.87125 -9.66342 -9.63146 -9.43285 -9.21820 -8.62918 -8.41316 -6.83372 -5.71895 -3.04947 1.43788 2.10808 2.42383 2.81462 3.19357 3.38338 3.43170 3.46231 3.96525 4.18981 4.32168 4.48092 4.55710 4.59819 4.60845 4.87295 5.01291 5.02477 5.09026 5.13186 5.18515 5.28686 5.34245 5.38709 5.51319 5.56306 5.60657 5.64893 5.71805 5.83588 5.92338 5.96627 6.08626 6.18454 6.21538 6.26819 6.39586 6.40461 6.54353 6.64280 6.66324 6.88296 7.08929 7.55722 7.57690 7.62927 7.81725 8.24424 8.36791 8.44110 9.19034 9.82839 10.51429 11.40641 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.002328 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.684830 B =12023.316490 C =12652.526787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.295 5.295 4 C -0.047 4.047 5 C -0.003 4.003 6 C -0.054 4.054 7 C 0.515 3.485 8 O -0.530 6.530 9 N -0.610 5.610 10 C 0.110 3.890 11 C -0.130 4.130 12 C 0.167 3.833 13 H 0.020 0.980 14 C -0.123 4.123 15 H 0.078 0.922 16 C -0.136 4.136 17 C 0.177 3.823 18 N -0.595 5.595 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.128 3.872 28 N -0.239 5.239 29 N -0.088 5.088 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.190 0.810 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.055 0.945 46 H 0.251 0.749 47 H 0.088 0.912 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.776 -13.064 -0.353 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.089 5.089 4 C -0.198 4.198 5 C -0.142 4.142 6 C -0.096 4.096 7 C 0.301 3.699 8 O -0.406 6.406 9 N -0.343 5.343 10 C -0.013 4.013 11 C -0.169 4.169 12 C 0.058 3.942 13 H 0.037 0.963 14 C -0.143 4.143 15 H 0.097 0.903 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.320 5.320 19 C -0.352 4.352 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.006 3.994 28 N -0.105 5.105 29 N -0.067 5.067 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.207 0.793 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.400 -12.928 -2.122 25.091 hybrid contribution 1.226 -0.330 2.047 2.408 sum -20.174 -13.258 -0.075 24.141 Atomic orbital electron populations 1.22080 0.92705 1.03643 1.04081 1.22074 0.96902 0.76650 1.05237 1.47411 1.30801 1.11940 1.18742 1.23307 1.00913 0.95402 1.00185 1.21263 1.02298 0.94067 0.96590 1.19956 0.95348 0.97057 0.97253 1.20289 0.81229 0.79312 0.89046 1.90722 1.70385 1.59808 1.19646 1.48289 1.34998 1.40227 1.10827 1.21893 0.98470 0.99930 0.81047 1.21968 0.93122 1.01850 0.99942 1.20640 0.87194 0.94552 0.91799 0.96294 1.22611 0.93174 1.00334 0.98176 0.90327 1.22699 0.97191 0.98880 0.98686 1.21533 0.91338 1.00452 0.81448 1.44221 1.00154 1.85070 1.02513 1.19032 0.90841 1.42659 0.82674 0.90324 1.24806 0.96159 1.02379 0.97267 1.69958 1.03456 1.56449 1.26981 0.86077 0.79002 0.77271 0.83599 1.20546 1.21866 1.21826 1.21576 0.87389 0.98464 0.91973 1.75118 1.07529 1.15744 1.12153 1.78285 1.20845 0.92873 1.14701 0.90613 0.89935 0.91736 0.88327 0.87705 0.79332 0.87228 0.87137 0.91547 0.90281 0.91399 0.90573 0.92106 0.92298 0.94421 0.92716 0.93829 0.89351 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.04 37.16 0.37 -0.34 16 2 C 0.11 0.55 7.18 -4.04 -0.03 0.52 16 3 N -0.30 -2.89 3.44 -61.26 -0.21 -3.10 16 4 C -0.05 -0.44 11.49 -17.04 -0.20 -0.64 16 5 C 0.00 -0.04 6.00 -82.77 -0.50 -0.54 16 6 C -0.05 -0.58 4.61 -29.03 -0.13 -0.71 16 7 C 0.51 7.63 7.66 -10.99 -0.08 7.55 16 8 O -0.53 -10.09 14.96 5.56 0.08 -10.00 16 9 N -0.61 -8.71 3.00 -172.27 -0.52 -9.22 16 10 C 0.11 1.34 6.23 -3.28 -0.02 1.32 16 11 C -0.13 -2.06 5.50 -26.77 -0.15 -2.21 16 12 C 0.17 3.24 2.57 -67.98 -0.17 3.07 16 13 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 14 C -0.12 -2.18 2.86 -89.40 -0.26 -2.44 16 15 H 0.08 1.51 8.11 -51.92 -0.42 1.09 16 16 C -0.14 -2.54 6.54 -25.13 -0.16 -2.71 16 17 C 0.18 4.24 5.46 -1.91 -0.01 4.23 16 18 N -0.60 -14.62 3.35 -163.09 -0.55 -15.16 16 19 C -0.22 -5.98 9.88 -15.06 -0.15 -6.13 16 20 H 0.08 2.00 7.21 -52.49 -0.38 1.62 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.78 10.43 55.49 0.58 -26.20 16 23 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.13 2.01 5.95 -3.78 -0.02 1.99 16 28 N -0.24 -3.76 11.82 33.29 0.39 -3.37 16 29 N -0.09 -1.21 12.91 60.35 0.78 -0.44 16 30 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.20 8.07 -51.93 -0.42 -0.22 16 35 H 0.19 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.11 0.95 7.98 -51.93 -0.41 0.54 16 37 H 0.11 0.83 7.54 -51.93 -0.39 0.44 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.70 5.83 -51.93 -0.30 0.40 16 40 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 41 H 0.08 1.22 7.62 -51.93 -0.40 0.82 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.02 8.12 -51.92 -0.42 0.60 16 44 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 45 H 0.05 1.46 7.20 -51.93 -0.37 1.09 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 48 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -36.56 379.98 -7.97 -44.53 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.63 Total: -2.00 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.61 Total: 2.59 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.48 Total: -57.49 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.56 -7.97 -44.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.755 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds