Wall clock time and date at job start Tue Mar 31 2020 17:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47040 * 2 1 4 4 C 1.35312 * 125.86582 * 124.99824 * 3 2 1 5 5 C 1.35359 * 106.17441 * 179.77310 * 4 3 2 6 6 C 1.50700 * 126.74967 * 180.21133 * 5 4 3 7 7 C 1.50701 * 109.47285 * 125.00029 * 6 5 4 8 8 O 1.21281 * 119.99580 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99924 * 179.97438 * 7 6 5 10 10 C 1.46597 * 119.69031 * 359.72978 * 9 7 6 11 11 C 1.54346 * 110.36704 * 132.10910 * 10 9 7 12 12 C 1.51521 * 107.26759 * 51.30546 * 11 10 9 13 13 H 1.09000 * 108.81406 * 53.32104 * 12 11 10 14 14 C 1.55357 * 107.79017 * 295.01197 * 12 11 10 15 15 H 1.09008 * 111.50538 * 309.60205 * 14 12 11 16 16 C 1.53740 * 100.22496 * 190.93150 * 14 12 11 17 17 C 1.55289 * 101.84300 * 39.09398 * 16 14 12 18 18 N 1.45481 * 117.34049 * 177.97257 * 12 11 10 19 19 C 1.36929 * 126.40400 * 329.38527 * 18 12 11 20 20 H 1.08001 * 120.00423 * 0.02562 * 19 18 12 21 21 C 1.38815 * 120.00226 * 179.97438 * 19 18 12 22 22 N 1.31622 * 119.99331 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00570 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46934 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47158 * 119.99841 * 23 21 19 26 26 H 1.48496 * 109.47254 * 240.00081 * 23 21 19 27 27 C 1.47725 * 119.68761 * 179.97438 * 9 7 6 28 28 N 1.33772 * 106.49554 * 0.22938 * 5 4 3 29 29 N 1.28640 * 108.88426 * 359.97438 * 28 5 4 30 30 H 1.09005 * 109.47204 * 59.99535 * 1 2 3 31 31 H 1.08995 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46938 * 299.99969 * 1 2 3 33 33 H 1.08994 * 109.47014 * 240.00337 * 2 1 3 34 34 H 1.08995 * 109.47162 * 120.00455 * 2 1 3 35 35 H 1.08002 * 126.91567 * 0.04325 * 4 3 2 36 36 H 1.09005 * 109.46571 * 244.99990 * 6 5 4 37 37 H 1.09003 * 109.47227 * 4.99774 * 6 5 4 38 38 H 1.08997 * 109.25861 * 252.47549 * 10 9 7 39 39 H 1.08998 * 109.25268 * 11.90819 * 10 9 7 40 40 H 1.09001 * 110.03033 * 291.80616 * 11 10 9 41 41 H 1.09000 * 109.80564 * 170.67662 * 11 10 9 42 42 H 1.08999 * 110.95983 * 157.23450 * 16 14 12 43 43 H 1.09007 * 110.95477 * 280.95742 * 16 14 12 44 44 H 1.09002 * 109.91993 * 218.17643 * 17 16 14 45 45 H 1.09001 * 110.09012 * 96.96250 * 17 16 14 46 46 H 0.97007 * 119.99848 * 180.02562 * 22 21 19 47 47 H 1.09007 * 110.06587 * 351.26027 * 27 9 7 48 48 H 1.09003 * 110.06548 * 112.71944 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9190 0.8983 5 6 3.0577 3.2064 0.5217 6 6 3.9318 4.2293 1.2004 7 6 4.9035 4.8021 0.2010 8 8 4.8880 4.4172 -0.9490 9 7 5.7896 5.7421 0.5852 10 6 5.7983 6.2066 1.9756 11 6 7.2384 6.2120 2.5311 12 6 8.0989 6.9724 1.5426 13 1 7.6468 7.9472 1.3599 14 6 8.1246 6.1644 0.2159 15 1 8.3792 5.1188 0.3897 16 6 9.2387 6.9103 -0.5364 17 6 10.2554 7.1968 0.6019 18 7 9.5034 7.1499 1.8777 19 6 10.0317 7.2537 3.1367 20 1 9.3842 7.2047 3.9998 21 6 11.3995 7.4208 3.3040 22 7 12.1886 7.4800 2.2522 23 14 12.1203 7.5617 5.0214 24 1 11.0302 7.4647 6.0252 25 1 13.0941 6.4623 5.2413 26 1 12.8096 8.8693 5.1633 27 6 6.7394 6.2984 -0.4000 28 7 2.3089 3.3920 -0.5711 29 7 1.7036 2.2924 -0.8528 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.3274 1.4202 1.7430 36 1 3.3099 5.0293 1.6022 37 1 4.4831 3.7549 2.0123 38 1 5.3888 7.2157 2.0200 39 1 5.1814 5.5421 2.5804 40 1 7.6037 5.1900 2.6313 41 1 7.2585 6.7105 3.5002 42 1 9.6820 6.2769 -1.3047 43 1 8.8640 7.8389 -0.9672 44 1 10.6958 8.1847 0.4666 45 1 11.0383 6.4385 0.6042 46 1 13.1446 7.5964 2.3690 47 1 6.6874 5.7328 -1.3304 48 1 6.5118 7.3478 -0.5876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036778038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:52 Heat of formation + Delta-G solvation = 71.905315 kcal Electronic energy + Delta-G solvation = -28876.775847 eV Core-core repulsion = 24968.877486 eV Total energy + Delta-G solvation = -3907.898361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.15673 -41.38041 -39.63999 -36.75964 -36.36030 -34.58628 -33.61998 -32.92652 -31.70590 -31.37223 -29.98634 -28.66543 -26.63107 -25.53253 -24.90815 -23.69024 -22.85099 -22.14730 -21.81542 -21.09930 -19.90657 -18.64186 -18.14503 -17.86388 -17.23043 -16.95531 -16.65248 -16.50236 -15.93585 -15.68892 -15.59436 -15.31746 -14.94043 -14.81278 -14.61556 -14.15365 -13.95466 -13.79997 -13.60838 -13.37139 -13.24089 -13.07394 -13.06071 -12.91604 -12.68863 -12.60938 -12.41379 -12.29032 -12.01892 -11.92953 -11.74650 -11.62606 -11.57522 -11.48264 -10.96723 -10.93266 -10.75421 -10.68838 -10.06441 -9.59992 -8.84274 -7.80027 -5.14443 0.72715 1.48728 1.49172 1.49550 1.59485 1.61800 1.74144 2.13671 2.53569 3.34198 3.39237 3.48578 3.64368 3.79377 3.90418 3.94920 3.98559 3.99952 4.05285 4.22906 4.28401 4.29380 4.31955 4.45748 4.47258 4.56027 4.58727 4.69788 4.75439 4.76738 4.78275 4.87932 4.89237 4.97599 5.04193 5.08852 5.11245 5.17725 5.27502 5.30167 5.51566 5.58537 5.62955 5.69047 5.78926 5.79154 6.23733 6.49880 7.12095 7.27965 7.62100 7.82945 8.52491 9.32349 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.002328 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.684830 B =12023.316490 C =12652.526787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.029 4.029 5 C -0.033 4.033 6 C -0.047 4.047 7 C 0.511 3.489 8 O -0.579 6.579 9 N -0.610 5.610 10 C 0.116 3.884 11 C -0.123 4.123 12 C 0.156 3.844 13 H 0.020 0.980 14 C -0.106 4.106 15 H 0.063 0.937 16 C -0.124 4.124 17 C 0.182 3.818 18 N -0.615 5.615 19 C -0.223 4.223 20 H 0.093 0.907 21 C -0.076 4.076 22 N -0.957 5.957 23 Si 0.975 3.025 24 H -0.258 1.258 25 H -0.297 1.297 26 H -0.298 1.298 27 C 0.136 3.864 28 N -0.293 5.293 29 N -0.128 5.128 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.238 0.762 36 H 0.133 0.867 37 H 0.151 0.849 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.002 0.998 45 H 0.017 0.983 46 H 0.243 0.757 47 H 0.077 0.923 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.137 -14.724 2.253 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.018 4.018 3 N -0.083 5.083 4 C -0.181 4.181 5 C -0.173 4.173 6 C -0.088 4.088 7 C 0.300 3.700 8 O -0.459 6.459 9 N -0.343 5.343 10 C -0.006 4.006 11 C -0.162 4.162 12 C 0.049 3.951 13 H 0.037 0.963 14 C -0.127 4.127 15 H 0.082 0.918 16 C -0.163 4.163 17 C 0.057 3.943 18 N -0.340 5.340 19 C -0.352 4.352 20 H 0.110 0.890 21 C -0.268 4.268 22 N -0.607 5.607 23 Si 0.805 3.195 24 H -0.182 1.182 25 H -0.225 1.225 26 H -0.226 1.226 27 C 0.013 3.987 28 N -0.158 5.158 29 N -0.107 5.107 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.163 0.837 35 H 0.255 0.745 36 H 0.151 0.849 37 H 0.169 0.831 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.020 0.980 45 H 0.035 0.965 46 H 0.052 0.948 47 H 0.096 0.904 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.839 -14.598 0.493 27.958 hybrid contribution 1.937 0.129 1.218 2.292 sum -21.902 -14.469 1.711 26.305 Atomic orbital electron populations 1.22053 0.92481 1.04912 1.02589 1.22564 0.97184 0.74579 1.07474 1.47860 1.29956 1.12796 1.17673 1.24039 0.99273 0.94387 1.00356 1.21757 1.02950 0.96003 0.96573 1.20094 0.94539 0.97618 0.96543 1.21086 0.81280 0.78444 0.89221 1.90709 1.71774 1.61281 1.22097 1.48365 1.34478 1.40104 1.11357 1.22039 0.96406 1.02157 0.80028 1.21902 0.94659 1.00494 0.99159 1.20896 0.85118 0.95265 0.93822 0.96276 1.22422 0.94100 0.98861 0.97284 0.91844 1.22580 0.96271 1.00192 0.97213 1.21281 0.92061 0.97220 0.83694 1.44516 1.02519 1.84937 1.02000 1.19489 0.91109 1.40559 0.84066 0.88968 1.25672 0.96916 1.03396 1.00832 1.70192 1.03069 1.58433 1.29015 0.85034 0.78338 0.76283 0.79881 1.18224 1.22494 1.22601 1.21357 0.86383 0.99019 0.91966 1.75037 1.09265 1.17263 1.14273 1.78189 1.22320 0.93606 1.16566 0.93121 0.87234 0.92173 0.87809 0.83724 0.74544 0.84936 0.83120 0.90003 0.85731 0.92246 0.90325 0.90806 0.90608 0.97970 0.96498 0.94763 0.90450 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 10.04 71.98 0.72 -0.37 16 2 C 0.10 0.70 7.18 86.38 0.62 1.32 16 3 N -0.29 -5.06 3.44 -347.73 -1.20 -6.26 16 4 C -0.03 -0.43 11.49 83.49 0.96 0.53 16 5 C -0.03 -0.75 6.00 41.60 0.25 -0.50 16 6 C -0.05 -0.81 4.61 29.10 0.13 -0.68 16 7 C 0.51 13.95 7.66 87.66 0.67 14.63 16 8 O -0.58 -21.81 14.96 -3.03 -0.05 -21.86 16 9 N -0.61 -15.75 3.00 -817.32 -2.45 -18.20 16 10 C 0.12 2.32 6.23 86.82 0.54 2.86 16 11 C -0.12 -3.56 5.50 30.57 0.17 -3.39 16 12 C 0.16 5.89 2.57 45.51 0.12 6.01 16 13 H 0.02 0.76 7.92 -2.39 -0.02 0.74 16 14 C -0.11 -3.71 2.86 -10.00 -0.03 -3.74 16 15 H 0.06 2.42 8.11 -2.38 -0.02 2.40 16 16 C -0.12 -4.67 6.54 31.63 0.21 -4.47 16 17 C 0.18 9.12 5.46 86.85 0.47 9.60 16 18 N -0.62 -30.54 3.35 -669.89 -2.24 -32.78 16 19 C -0.22 -11.94 9.88 84.04 0.83 -11.11 16 20 H 0.09 4.56 7.21 -2.91 -0.02 4.54 16 21 C -0.08 -4.27 5.49 84.86 0.47 -3.81 16 22 N -0.96 -57.98 10.43 21.65 0.23 -57.75 16 23 Si 0.98 45.00 29.55 68.60 2.03 47.02 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 27 C 0.14 4.07 5.95 85.88 0.51 4.58 16 28 N -0.29 -9.15 11.82 -48.60 -0.57 -9.73 16 29 N -0.13 -3.53 12.91 37.02 0.48 -3.05 16 30 H 0.05 0.60 8.12 -2.38 -0.02 0.58 16 31 H 0.11 0.12 8.14 -2.39 -0.02 0.11 16 32 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.14 -0.14 8.07 -2.39 -0.02 -0.16 16 35 H 0.24 0.91 8.06 -2.91 -0.02 0.88 16 36 H 0.13 1.67 7.98 -2.38 -0.02 1.65 16 37 H 0.15 1.33 7.54 -2.39 -0.02 1.31 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.12 1.42 5.83 -2.39 -0.01 1.41 16 40 H 0.06 1.83 8.11 -2.39 -0.02 1.81 16 41 H 0.08 2.26 7.62 -2.39 -0.02 2.24 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.08 2.60 8.12 -2.38 -0.02 2.58 16 44 H 0.00 0.12 7.77 -2.39 -0.02 0.10 16 45 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 46 H 0.24 14.41 8.31 -92.70 -0.77 13.64 16 47 H 0.08 2.54 7.00 -2.38 -0.02 2.52 16 48 H 0.08 2.18 8.08 -2.39 -0.02 2.16 16 Total: -1.00 -87.04 379.98 3.82 -83.22 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.95 Total: 7.92 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.64 Total: 11.47 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -5.76 Total: -127.78 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -87.04 3.82 -83.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.129 kcal (2) G-P(sol) polarization free energy of solvation -87.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds