Wall clock time and date at job start Tue Mar 31 2020 18:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34583 * 125.74185 * 2 1 4 4 N 1.30873 * 107.62435 * 180.02562 * 3 2 1 5 5 C 1.34553 * 107.26541 * 0.02562 * 4 3 2 6 6 C 1.47873 * 126.04613 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99984 * 187.42102 * 6 5 4 8 8 N 1.34779 * 120.00062 * 7.42798 * 6 5 4 9 9 C 1.46966 * 120.65160 * 7.33172 * 8 6 5 10 10 C 1.53195 * 108.88679 * 126.46207 * 9 8 6 11 11 C 1.53048 * 109.31117 * 54.55560 * 10 9 8 12 12 C 1.53037 * 109.53798 * 298.63421 * 11 10 9 13 13 C 1.46921 * 120.63340 * 187.14536 * 8 6 5 14 14 H 1.09001 * 109.58353 * 113.67472 * 13 8 6 15 15 C 1.53008 * 109.58311 * 353.40090 * 13 8 6 16 16 H 1.08996 * 110.63937 * 312.54850 * 15 13 8 17 17 C 1.55155 * 110.72098 * 75.69526 * 15 13 8 18 18 C 1.54908 * 101.57979 * 154.04151 * 17 15 13 19 19 N 1.47428 * 104.83363 * 322.99025 * 18 17 15 20 20 C 1.36934 * 125.64411 * 204.09674 * 19 18 17 21 21 H 1.08000 * 119.99241 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00784 * 0.02562 * 20 19 18 23 23 N 1.31619 * 119.99693 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00319 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46999 * 60.00425 * 24 22 20 26 26 H 1.48506 * 109.47030 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47228 * 300.00154 * 24 22 20 28 28 C 1.47012 * 108.70123 * 24.12729 * 19 18 17 29 29 N 1.28846 * 125.74995 * 180.32192 * 2 1 3 30 30 H 1.09000 * 109.47241 * 89.99840 * 1 2 3 31 31 H 1.09005 * 109.46455 * 209.99354 * 1 2 3 32 32 H 1.08992 * 109.47596 * 329.99455 * 1 2 3 33 33 H 1.07996 * 126.19012 * 0.02709 * 3 2 1 34 34 H 1.09001 * 109.59169 * 6.60648 * 9 8 6 35 35 H 1.08991 * 109.46714 * 246.24873 * 9 8 6 36 36 H 1.09001 * 109.49718 * 294.60724 * 10 9 8 37 37 H 1.09002 * 109.52053 * 174.52312 * 10 9 8 38 38 H 1.08998 * 109.45785 * 178.60819 * 11 10 9 39 39 H 1.08998 * 109.44489 * 58.64504 * 11 10 9 40 40 H 1.09002 * 109.49529 * 301.41457 * 12 11 10 41 41 H 1.09001 * 109.52335 * 181.33181 * 12 11 10 42 42 H 1.09000 * 111.00656 * 35.96527 * 17 15 13 43 43 H 1.08998 * 111.00238 * 272.11304 * 17 15 13 44 44 H 1.09003 * 110.37011 * 81.83210 * 18 17 15 45 45 H 1.09003 * 110.36823 * 204.14892 * 18 17 15 46 46 H 0.96996 * 120.00506 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.88759 * 239.52369 * 28 19 18 48 48 H 1.09002 * 109.88544 * 118.35964 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0924 0.0000 4 7 3.4950 0.6854 -0.0006 5 6 3.4750 -0.6600 -0.0015 6 6 4.6576 -1.5478 -0.0029 7 8 4.5168 -2.7474 -0.1396 8 7 5.8915 -1.0269 0.1475 9 6 6.0700 0.3950 0.4733 10 6 6.9547 0.5112 1.7186 11 6 8.2621 -0.2487 1.4832 12 6 7.9576 -1.7292 1.2435 13 6 7.0843 -1.8708 -0.0070 14 1 7.6470 -1.5508 -0.8840 15 6 6.6608 -3.3315 -0.1743 16 1 5.9223 -3.6062 0.5788 17 6 6.1085 -3.5829 -1.6023 18 6 6.3893 -5.0957 -1.7825 19 7 7.6840 -5.3214 -1.1145 20 6 8.5554 -6.3419 -1.3871 21 1 9.4828 -6.4209 -0.8393 22 6 8.2468 -7.2750 -2.3675 23 7 7.1168 -7.1784 -3.0354 24 14 9.4352 -8.6675 -2.7388 25 1 9.6368 -9.4855 -1.5158 26 1 8.8766 -9.5202 -3.8187 27 1 10.7370 -8.1036 -3.1773 28 6 7.8843 -4.2698 -0.1069 29 7 2.2178 -1.0457 -0.0059 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8898 0.5139 33 1 1.9163 2.1191 0.0004 34 1 5.0991 0.8492 0.6712 35 1 6.5491 0.9021 -0.3640 36 1 6.4345 0.0834 2.5756 37 1 7.1739 1.5611 1.9129 38 1 8.9038 -0.1470 2.3584 39 1 8.7695 0.1635 0.6110 40 1 7.4280 -2.1358 2.1051 41 1 8.8905 -2.2743 1.0994 42 1 6.6522 -2.9939 -2.3408 43 1 5.0394 -3.3756 -1.6497 44 1 5.6077 -5.6862 -1.3044 45 1 6.4600 -5.3449 -2.8412 46 1 6.9009 -7.8306 -3.7202 47 1 8.7930 -3.7106 -0.3301 48 1 7.9552 -4.7156 0.8852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039200642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:19 Heat of formation + Delta-G solvation = 134.959473 kcal Electronic energy + Delta-G solvation = -30184.487835 eV Core-core repulsion = 26279.323707 eV Total energy + Delta-G solvation = -3905.164128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.63674 -40.43732 -37.26255 -36.75981 -34.91511 -32.87060 -32.71106 -31.92615 -30.91275 -28.93296 -28.12861 -27.03322 -25.37744 -24.29290 -23.57344 -22.98482 -22.02761 -20.89655 -19.71328 -19.50883 -19.35435 -17.51443 -16.98518 -16.69949 -16.26752 -16.10518 -15.28653 -15.06026 -14.72727 -14.48482 -14.09122 -13.99132 -13.70252 -13.61446 -13.41690 -13.29640 -12.90828 -12.82684 -12.35561 -12.12591 -11.86624 -11.60810 -11.31135 -11.15091 -11.08174 -10.82204 -10.74743 -10.69405 -10.65836 -10.62785 -10.08947 -9.96444 -9.88223 -9.64510 -9.57906 -9.41016 -9.12655 -8.72820 -8.42988 -8.13945 -6.58653 -5.43616 -2.85225 1.31888 1.93281 1.97446 3.00294 3.44163 3.51672 3.54853 3.56971 3.90495 4.07588 4.43975 4.58933 4.65322 4.74243 4.88302 4.92593 4.95775 5.04258 5.20696 5.41295 5.49945 5.64571 5.66269 5.71896 5.82810 5.86403 5.92182 5.96994 6.05869 6.12453 6.15569 6.19093 6.22798 6.26828 6.43047 6.47585 6.58481 6.69929 6.78685 6.96491 7.12230 7.27561 7.42348 7.55077 7.79789 7.85049 7.93022 8.12987 8.45441 8.60847 9.43746 10.05464 10.73777 11.58957 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.003373 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.448213 B = 8298.680636 C = 9901.694067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.307 5.307 3 C 0.184 3.816 4 N -0.485 5.485 5 C 0.155 3.845 6 C 0.591 3.409 7 O -0.475 6.475 8 N -0.587 5.587 9 C 0.082 3.918 10 C -0.133 4.133 11 C -0.121 4.121 12 C -0.131 4.131 13 C 0.163 3.837 14 H 0.073 0.927 15 C -0.094 4.094 16 H 0.100 0.900 17 C -0.136 4.136 18 C 0.157 3.843 19 N -0.605 5.605 20 C -0.218 4.218 21 H 0.074 0.926 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.139 3.861 29 N -0.253 5.253 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.224 0.776 34 H 0.133 0.867 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.086 0.914 44 H 0.009 0.991 45 H 0.099 0.901 46 H 0.250 0.750 47 H 0.017 0.983 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 24.472 9.073 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.102 5.102 3 C -0.110 4.110 4 N -0.211 5.211 5 C -0.125 4.125 6 C 0.375 3.625 7 O -0.346 6.346 8 N -0.321 5.321 9 C -0.041 4.041 10 C -0.171 4.171 11 C -0.159 4.159 12 C -0.169 4.169 13 C 0.060 3.940 14 H 0.091 0.909 15 C -0.113 4.113 16 H 0.118 0.882 17 C -0.174 4.174 18 C 0.032 3.968 19 N -0.331 5.331 20 C -0.347 4.347 21 H 0.092 0.908 22 C -0.210 4.210 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.013 3.987 29 N -0.091 5.091 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.240 0.760 34 H 0.150 0.850 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.027 0.973 45 H 0.117 0.883 46 H 0.061 0.939 47 H 0.035 0.965 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -12.017 23.127 8.841 27.521 hybrid contribution 0.364 -0.281 -0.179 0.493 sum -11.654 22.846 8.663 27.070 Atomic orbital electron populations 1.22240 0.72352 1.05886 1.05027 1.47374 1.09301 1.03888 1.49641 1.26604 0.86323 0.95963 1.02151 1.71103 1.19247 1.09771 1.21020 1.24146 0.92458 0.89194 1.06735 1.16450 0.80808 0.85831 0.79423 1.90922 1.84516 1.13095 1.46090 1.47686 1.04468 1.10650 1.69321 1.22557 1.04077 0.80922 0.96527 1.21922 0.96509 1.00306 0.98359 1.21557 0.97010 0.95682 1.01607 1.22027 1.00488 0.96225 0.98207 1.21416 0.84114 0.91175 0.97265 0.90900 1.22644 0.97400 0.90480 1.00752 0.88161 1.23479 1.00469 0.99941 0.93522 1.21854 0.85605 0.88719 1.00616 1.44547 1.19862 1.28445 1.40234 1.19040 0.98587 1.01818 1.15223 0.90801 1.24780 0.97552 0.99329 0.99312 1.69853 1.23148 1.36953 1.27071 0.86189 0.80029 0.81999 0.77500 1.21379 1.21701 1.21338 1.21393 0.94746 0.90145 0.92434 1.74414 1.02873 1.13004 1.18842 0.89134 0.88137 0.88092 0.75960 0.84976 0.91977 0.91983 0.91150 0.92010 0.91872 0.91519 0.90050 0.94077 0.89650 0.97276 0.88339 0.93949 0.96497 0.96625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 11.38 59.85 0.68 0.96 16 2 N -0.31 -2.69 3.72 -69.39 -0.26 -2.95 16 3 C 0.18 1.38 12.62 -90.48 -1.14 0.24 16 4 N -0.49 -5.57 7.88 -12.36 -0.10 -5.66 16 5 C 0.15 2.30 7.64 -156.35 -1.19 1.10 16 6 C 0.59 10.20 7.32 -12.32 -0.09 10.11 16 7 O -0.47 -9.83 9.91 5.32 0.05 -9.78 16 8 N -0.59 -8.92 2.98 -166.28 -0.50 -9.42 16 9 C 0.08 0.96 6.08 -3.69 -0.02 0.94 16 10 C -0.13 -1.35 6.08 -26.61 -0.16 -1.51 16 11 C -0.12 -1.32 5.88 -26.69 -0.16 -1.48 16 12 C -0.13 -1.82 4.87 -26.61 -0.13 -1.95 16 13 C 0.16 2.67 2.46 -67.60 -0.17 2.51 16 14 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 15 C -0.09 -1.94 1.86 -88.78 -0.16 -2.11 16 16 H 0.10 2.24 6.04 -51.87 -0.31 1.93 16 17 C -0.14 -3.15 5.58 -24.58 -0.14 -3.29 16 18 C 0.16 4.38 5.89 -2.53 -0.01 4.36 16 19 N -0.61 -17.21 3.39 -170.07 -0.58 -17.79 16 20 C -0.22 -6.56 10.27 -15.06 -0.15 -6.72 16 21 H 0.07 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.44 5.49 -17.43 -0.10 -0.54 16 23 N -0.92 -28.96 10.09 55.49 0.56 -28.40 16 24 Si 0.91 23.40 29.55 -169.99 -5.02 18.38 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.14 3.25 5.86 -3.07 -0.02 3.23 16 29 N -0.25 -3.57 12.09 32.08 0.39 -3.18 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.22 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.13 1.53 4.16 -59.42 -0.25 1.28 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.15 6.78 -51.93 -0.35 0.80 16 42 H 0.04 0.94 7.89 -51.93 -0.41 0.53 16 43 H 0.09 2.01 5.34 -53.42 -0.29 1.72 16 44 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.10 3.03 5.87 -51.93 -0.30 2.72 16 46 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.02 0.38 6.94 -51.93 -0.36 0.02 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -38.44 364.89 -10.22 -48.66 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -7.30 Total: -1.24 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.97 Total: 5.87 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -0.48 Total: -67.39 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.05 Total: -9.78 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.44 -10.22 -48.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039200642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.621 kcal (2) G-P(sol) polarization free energy of solvation -38.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds