Wall clock time and date at job start Tue Mar 31 2020 18:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34583 * 125.74185 * 2 1 4 4 N 1.30873 * 107.62435 * 180.02562 * 3 2 1 5 5 C 1.34553 * 107.26541 * 0.02562 * 4 3 2 6 6 C 1.47873 * 126.04613 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99984 * 187.42102 * 6 5 4 8 8 N 1.34779 * 120.00062 * 7.42798 * 6 5 4 9 9 C 1.46966 * 120.65160 * 7.33172 * 8 6 5 10 10 C 1.53195 * 108.88679 * 126.46207 * 9 8 6 11 11 C 1.53048 * 109.31117 * 54.55560 * 10 9 8 12 12 C 1.53037 * 109.53798 * 298.63421 * 11 10 9 13 13 C 1.46921 * 120.63340 * 187.14536 * 8 6 5 14 14 H 1.09001 * 109.58353 * 113.67472 * 13 8 6 15 15 C 1.53008 * 109.58311 * 353.40090 * 13 8 6 16 16 H 1.08996 * 110.63937 * 312.54850 * 15 13 8 17 17 C 1.55155 * 110.72098 * 75.69526 * 15 13 8 18 18 C 1.54908 * 101.57979 * 154.04151 * 17 15 13 19 19 N 1.47428 * 104.83363 * 322.99025 * 18 17 15 20 20 C 1.36934 * 125.64411 * 204.09674 * 19 18 17 21 21 H 1.08000 * 119.99241 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00784 * 0.02562 * 20 19 18 23 23 N 1.31619 * 119.99693 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00319 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46999 * 60.00425 * 24 22 20 26 26 H 1.48506 * 109.47030 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47228 * 300.00154 * 24 22 20 28 28 C 1.47012 * 108.70123 * 24.12729 * 19 18 17 29 29 N 1.28846 * 125.74995 * 180.32192 * 2 1 3 30 30 H 1.09000 * 109.47241 * 89.99840 * 1 2 3 31 31 H 1.09005 * 109.46455 * 209.99354 * 1 2 3 32 32 H 1.08992 * 109.47596 * 329.99455 * 1 2 3 33 33 H 1.07996 * 126.19012 * 0.02709 * 3 2 1 34 34 H 1.09001 * 109.59169 * 6.60648 * 9 8 6 35 35 H 1.08991 * 109.46714 * 246.24873 * 9 8 6 36 36 H 1.09001 * 109.49718 * 294.60724 * 10 9 8 37 37 H 1.09002 * 109.52053 * 174.52312 * 10 9 8 38 38 H 1.08998 * 109.45785 * 178.60819 * 11 10 9 39 39 H 1.08998 * 109.44489 * 58.64504 * 11 10 9 40 40 H 1.09002 * 109.49529 * 301.41457 * 12 11 10 41 41 H 1.09001 * 109.52335 * 181.33181 * 12 11 10 42 42 H 1.09000 * 111.00656 * 35.96527 * 17 15 13 43 43 H 1.08998 * 111.00238 * 272.11304 * 17 15 13 44 44 H 1.09003 * 110.37011 * 81.83210 * 18 17 15 45 45 H 1.09003 * 110.36823 * 204.14892 * 18 17 15 46 46 H 0.96996 * 120.00506 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.88759 * 239.52369 * 28 19 18 48 48 H 1.09002 * 109.88544 * 118.35964 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0924 0.0000 4 7 3.4950 0.6854 -0.0006 5 6 3.4750 -0.6600 -0.0015 6 6 4.6576 -1.5478 -0.0029 7 8 4.5168 -2.7474 -0.1396 8 7 5.8915 -1.0269 0.1475 9 6 6.0700 0.3950 0.4733 10 6 6.9547 0.5112 1.7186 11 6 8.2621 -0.2487 1.4832 12 6 7.9576 -1.7292 1.2435 13 6 7.0843 -1.8708 -0.0070 14 1 7.6470 -1.5508 -0.8840 15 6 6.6608 -3.3315 -0.1743 16 1 5.9223 -3.6062 0.5788 17 6 6.1085 -3.5829 -1.6023 18 6 6.3893 -5.0957 -1.7825 19 7 7.6840 -5.3214 -1.1145 20 6 8.5554 -6.3419 -1.3871 21 1 9.4828 -6.4209 -0.8393 22 6 8.2468 -7.2750 -2.3675 23 7 7.1168 -7.1784 -3.0354 24 14 9.4352 -8.6675 -2.7388 25 1 9.6368 -9.4855 -1.5158 26 1 8.8766 -9.5202 -3.8187 27 1 10.7370 -8.1036 -3.1773 28 6 7.8843 -4.2698 -0.1069 29 7 2.2178 -1.0457 -0.0059 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8898 0.5139 33 1 1.9163 2.1191 0.0004 34 1 5.0991 0.8492 0.6712 35 1 6.5491 0.9021 -0.3640 36 1 6.4345 0.0834 2.5756 37 1 7.1739 1.5611 1.9129 38 1 8.9038 -0.1470 2.3584 39 1 8.7695 0.1635 0.6110 40 1 7.4280 -2.1358 2.1051 41 1 8.8905 -2.2743 1.0994 42 1 6.6522 -2.9939 -2.3408 43 1 5.0394 -3.3756 -1.6497 44 1 5.6077 -5.6862 -1.3044 45 1 6.4600 -5.3449 -2.8412 46 1 6.9009 -7.8306 -3.7202 47 1 8.7930 -3.7106 -0.3301 48 1 7.9552 -4.7156 0.8852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039200642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:18 Heat of formation + Delta-G solvation = 109.924595 kcal Electronic energy + Delta-G solvation = -30185.573429 eV Core-core repulsion = 26279.323707 eV Total energy + Delta-G solvation = -3906.249722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.42635 -41.76353 -38.79042 -38.29794 -35.73364 -34.73918 -33.76470 -32.76282 -32.58544 -30.87628 -28.82902 -28.73181 -26.88872 -25.91247 -24.61839 -24.03892 -23.02346 -22.26202 -21.47952 -21.03371 -20.53485 -18.87621 -18.34808 -17.74668 -17.40822 -17.29044 -16.77286 -16.53456 -16.08061 -15.75487 -15.62764 -15.15147 -14.97817 -14.62070 -14.29277 -14.16715 -14.12207 -13.95895 -13.94133 -13.63284 -13.40980 -13.17410 -12.93334 -12.78493 -12.69396 -12.27355 -12.19042 -12.08393 -11.96090 -11.74758 -11.70871 -11.55206 -11.42463 -11.30632 -11.09477 -10.77092 -10.68988 -10.43220 -10.17323 -9.45198 -8.87807 -7.74332 -5.21258 0.38358 1.16092 1.34905 1.43738 1.49599 1.55841 1.98765 2.28598 2.50620 3.06244 3.32571 3.45063 3.66933 3.77201 3.85176 3.94010 4.06935 4.17050 4.21217 4.29517 4.36443 4.38511 4.41899 4.47304 4.62124 4.68332 4.71038 4.73406 4.79652 4.92925 4.93070 5.00916 5.07244 5.12517 5.16701 5.21999 5.26184 5.31993 5.44300 5.45353 5.51090 5.56544 5.63954 5.74512 5.81671 5.93170 6.29510 6.38400 6.96473 7.10292 7.23804 7.79009 8.47107 9.27415 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.003373 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.448213 B = 8298.680636 C = 9901.694067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.303 5.303 3 C 0.206 3.794 4 N -0.500 5.500 5 C 0.127 3.873 6 C 0.584 3.416 7 O -0.529 6.529 8 N -0.583 5.583 9 C 0.078 3.922 10 C -0.126 4.126 11 C -0.115 4.115 12 C -0.127 4.127 13 C 0.167 3.833 14 H 0.074 0.926 15 C -0.074 4.074 16 H 0.081 0.919 17 C -0.118 4.118 18 C 0.165 3.835 19 N -0.627 5.627 20 C -0.241 4.241 21 H 0.084 0.916 22 C -0.075 4.075 23 N -0.954 5.954 24 Si 0.989 3.011 25 H -0.277 1.277 26 H -0.293 1.293 27 H -0.272 1.272 28 C 0.137 3.863 29 N -0.293 5.293 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.284 0.716 34 H 0.140 0.860 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.083 0.917 44 H -0.031 1.031 45 H 0.067 0.933 46 H 0.246 0.754 47 H 0.035 0.965 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 28.156 10.180 32.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.097 5.097 3 C -0.087 4.087 4 N -0.227 5.227 5 C -0.151 4.151 6 C 0.370 3.630 7 O -0.405 6.405 8 N -0.316 5.316 9 C -0.043 4.043 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.165 4.165 13 C 0.064 3.936 14 H 0.092 0.908 15 C -0.093 4.093 16 H 0.099 0.901 17 C -0.156 4.156 18 C 0.039 3.961 19 N -0.353 5.353 20 C -0.370 4.370 21 H 0.102 0.898 22 C -0.267 4.267 23 N -0.604 5.604 24 Si 0.816 3.184 25 H -0.203 1.203 26 H -0.219 1.219 27 H -0.198 1.198 28 C 0.012 3.988 29 N -0.134 5.134 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.166 0.834 33 H 0.299 0.701 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.101 0.899 44 H -0.013 1.013 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -11.698 26.883 9.985 30.972 hybrid contribution 0.086 -1.327 -0.498 1.420 sum -11.612 25.556 9.486 29.630 Atomic orbital electron populations 1.22733 0.69345 1.07817 1.06476 1.47766 1.10826 1.03054 1.48104 1.27683 0.84839 0.97586 0.98610 1.70977 1.21691 1.07853 1.22150 1.23583 0.91800 0.90327 1.09438 1.16902 0.82069 0.85739 0.78334 1.90870 1.85475 1.15291 1.48833 1.47810 1.03447 1.11959 1.68366 1.22834 1.05204 0.78566 0.97716 1.21908 0.95477 1.02047 0.96984 1.21546 0.97826 0.93014 1.02888 1.21982 0.99400 0.98944 0.96196 1.21242 0.85064 0.88348 0.98901 0.90825 1.22385 0.95361 0.93265 0.98284 0.90068 1.23265 1.00675 0.96223 0.95408 1.21569 0.84906 0.91432 0.98162 1.44880 1.19545 1.29360 1.41506 1.19518 0.99289 1.02642 1.15582 0.89783 1.25792 0.99510 1.02200 0.99165 1.70140 1.25128 1.37672 1.27427 0.85006 0.77902 0.78283 0.77236 1.20346 1.21916 1.19758 1.21570 0.96586 0.89586 0.91055 1.74314 1.03348 1.15894 1.19859 0.87883 0.89005 0.83427 0.70085 0.84281 0.91029 0.92715 0.87972 0.90055 0.90980 0.92386 0.90331 0.93866 0.89901 1.01278 0.91472 0.94482 0.94729 0.96660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.38 127.77 1.45 1.74 16 2 N -0.30 -4.67 3.72 -373.45 -1.39 -6.06 16 3 C 0.21 2.36 12.62 180.30 2.27 4.63 16 4 N -0.50 -10.46 7.88 -193.03 -1.52 -11.98 16 5 C 0.13 3.80 7.64 137.13 1.05 4.85 16 6 C 0.58 20.93 7.32 86.79 0.64 21.57 16 7 O -0.53 -23.50 9.91 -3.88 -0.04 -23.54 16 8 N -0.58 -17.65 2.98 -798.27 -2.38 -20.03 16 9 C 0.08 1.67 6.08 86.36 0.53 2.20 16 10 C -0.13 -2.17 6.08 30.68 0.19 -1.99 16 11 C -0.12 -2.17 5.88 30.62 0.18 -1.99 16 12 C -0.13 -3.38 4.87 30.67 0.15 -3.23 16 13 C 0.17 5.51 2.46 44.98 0.11 5.62 16 14 H 0.07 2.43 7.91 -2.39 -0.02 2.41 16 15 C -0.07 -3.20 1.86 -9.60 -0.02 -3.22 16 16 H 0.08 3.88 6.04 -3.05 -0.02 3.86 16 17 C -0.12 -5.79 5.58 31.99 0.18 -5.61 16 18 C 0.16 9.86 5.89 86.85 0.51 10.37 16 19 N -0.63 -37.25 3.39 -691.99 -2.35 -39.59 16 20 C -0.24 -14.94 10.27 84.03 0.86 -14.08 16 21 H 0.08 4.89 7.83 -2.91 -0.02 4.86 16 22 C -0.07 -4.64 5.49 84.86 0.47 -4.17 16 23 N -0.95 -62.75 10.09 21.65 0.22 -62.53 16 24 Si 0.99 49.07 29.55 68.60 2.03 51.09 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 28 C 0.14 6.60 5.86 86.73 0.51 7.10 16 29 N -0.29 -8.33 12.09 -52.43 -0.63 -8.96 16 30 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.15 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H 0.28 -0.68 8.06 -2.91 -0.02 -0.71 16 34 H 0.14 2.91 4.16 -17.18 -0.07 2.84 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 2.13 6.78 -2.39 -0.02 2.11 16 42 H 0.04 2.06 7.89 -2.39 -0.02 2.04 16 43 H 0.08 4.20 5.34 -27.72 -0.15 4.05 16 44 H -0.03 -2.04 8.14 -2.39 -0.02 -2.06 16 45 H 0.07 4.44 5.87 -2.39 -0.01 4.42 16 46 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 47 H 0.03 1.55 6.94 -2.38 -0.02 1.53 16 48 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -91.53 364.89 3.78 -87.76 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.77 Total: 10.06 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 9.07 Total: 23.79 kcal Atomic # 7 Polarization: -141.11 SS G_CDS: -8.05 Total: -149.17 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.04 Total: -23.54 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.09 kcal Total: -91.53 3.78 -87.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039200642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.683 kcal (2) G-P(sol) polarization free energy of solvation -91.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds