Wall clock time and date at job start Tue Mar 31 2020 18:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28710 * 126.03592 * 2 1 4 4 N 1.28519 * 110.63994 * 179.71918 * 3 2 1 5 5 C 1.33320 * 109.43399 * 0.46173 * 4 3 2 6 6 C 1.37002 * 106.37681 * 359.56034 * 5 4 3 7 7 C 1.47230 * 127.19589 * 180.23927 * 6 5 4 8 8 O 1.21613 * 120.00820 * 208.05276 * 7 6 5 9 9 N 1.34785 * 119.99490 * 28.05425 * 7 6 5 10 10 C 1.46926 * 120.63242 * 8.54084 * 9 7 6 11 11 C 1.53189 * 108.77698 * 126.37037 * 10 9 7 12 12 C 1.53042 * 109.31224 * 54.63236 * 11 10 9 13 13 C 1.53036 * 109.53933 * 298.63654 * 12 11 10 14 14 C 1.46923 * 120.63069 * 188.26332 * 9 7 6 15 15 H 1.08993 * 109.59350 * 113.84038 * 14 9 7 16 16 C 1.53004 * 109.58673 * 353.41681 * 14 9 7 17 17 H 1.09004 * 110.63803 * 322.91102 * 16 14 9 18 18 C 1.55154 * 110.71973 * 86.04969 * 16 14 9 19 19 C 1.55127 * 101.48594 * 153.73581 * 18 16 14 20 20 N 1.47426 * 104.94424 * 323.22434 * 19 18 16 21 21 C 1.36932 * 125.65222 * 204.03790 * 20 19 18 22 22 H 1.07999 * 119.99795 * 158.12704 * 21 20 19 23 23 C 1.38812 * 119.99850 * 338.13205 * 21 20 19 24 24 N 1.31617 * 119.99970 * 167.53126 * 23 21 20 25 25 Si 1.86802 * 120.00031 * 347.53164 * 23 21 20 26 26 H 1.48496 * 109.47298 * 84.01293 * 25 23 21 27 27 H 1.48497 * 109.46916 * 204.01634 * 25 23 21 28 28 H 1.48505 * 109.46950 * 324.00853 * 25 23 21 29 29 C 1.47024 * 108.69903 * 24.00244 * 20 19 18 30 30 H 1.08997 * 109.46956 * 272.81213 * 1 2 3 31 31 H 1.08999 * 109.47066 * 32.81173 * 1 2 3 32 32 H 1.09006 * 109.46904 * 152.80831 * 1 2 3 33 33 H 1.08003 * 126.81263 * 179.81293 * 5 4 3 34 34 H 1.08995 * 109.58656 * 246.15643 * 10 9 7 35 35 H 1.08995 * 109.58589 * 6.58059 * 10 9 7 36 36 H 1.08995 * 109.49941 * 174.58726 * 11 10 9 37 37 H 1.09004 * 109.49749 * 294.65287 * 11 10 9 38 38 H 1.08999 * 109.45987 * 58.66110 * 12 11 10 39 39 H 1.09004 * 109.45726 * 178.61333 * 12 11 10 40 40 H 1.09002 * 109.49537 * 181.31302 * 13 12 11 41 41 H 1.08995 * 109.50155 * 301.38051 * 13 12 11 42 42 H 1.08999 * 111.01041 * 271.93998 * 18 16 14 43 43 H 1.09000 * 111.00633 * 35.79412 * 18 16 14 44 44 H 1.09000 * 110.42109 * 204.29101 * 19 18 16 45 45 H 1.08999 * 110.20468 * 82.04228 * 19 18 16 46 46 H 0.97003 * 120.00216 * 180.02562 * 24 23 21 47 47 H 1.09003 * 109.88239 * 239.52163 * 29 20 19 48 48 H 1.08999 * 109.88666 * 118.36355 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6996 0.0059 5 6 3.5552 -0.6303 0.0000 6 6 2.2712 -1.1082 -0.0001 7 6 1.8462 -2.5178 -0.0007 8 8 0.7807 -2.8316 -0.4960 9 7 2.6380 -3.4606 0.5478 10 6 3.8340 -3.0815 1.3125 11 6 3.7715 -3.7501 2.6893 12 6 3.5915 -5.2595 2.5112 13 6 2.2757 -5.5353 1.7801 14 6 2.3183 -4.8867 0.3977 15 1 3.0848 -5.3714 -0.2069 16 6 0.9549 -5.0381 -0.2800 17 1 0.2684 -4.2630 0.0607 18 6 1.1022 -5.0011 -1.8240 19 6 -0.1378 -5.8183 -2.2723 20 7 -0.2753 -6.8846 -1.2636 21 6 -0.8981 -8.0890 -1.4552 22 1 -0.6586 -8.9280 -0.8186 23 6 -1.8369 -8.2316 -2.4676 24 7 -2.2537 -9.4309 -2.8145 25 14 -2.5090 -6.7214 -3.3377 26 1 -1.5784 -6.3203 -4.4232 27 1 -3.8397 -7.0352 -3.9173 28 1 -2.6433 -5.6080 -2.3642 29 6 0.3677 -6.4410 -0.0181 30 1 -0.3633 0.0504 1.0264 31 1 -0.3633 0.8637 -0.5569 32 1 -0.3633 -0.9141 -0.4696 33 1 4.4633 -1.2149 -0.0002 34 1 4.7267 -3.4159 0.7841 35 1 3.8625 -1.9986 1.4331 36 1 4.6972 -3.5555 3.2307 37 1 2.9294 -3.3468 3.2517 38 1 4.4216 -5.6578 1.9278 39 1 3.5714 -5.7406 3.4891 40 1 2.1370 -6.6113 1.6743 41 1 1.4474 -5.1161 2.3511 42 1 1.0548 -3.9779 -2.1967 43 1 2.0246 -5.4880 -2.1404 44 1 0.0273 -6.2492 -3.2598 45 1 -1.0246 -5.1845 -2.2776 46 1 -2.9095 -9.5306 -3.5223 47 1 1.1657 -7.1320 0.2536 48 1 -0.3702 -6.3905 0.7826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039221905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:18 Heat of formation + Delta-G solvation = 109.815071 kcal Electronic energy + Delta-G solvation = -30656.586426 eV Core-core repulsion = 26750.331955 eV Total energy + Delta-G solvation = -3906.254471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -44.42470 -41.86680 -39.10765 -38.42660 -35.71318 -35.09457 -34.19208 -33.27415 -31.96316 -31.09638 -29.22906 -29.04382 -27.08094 -25.89643 -24.71041 -24.23430 -23.19521 -22.77494 -21.60593 -21.12762 -20.56191 -18.93895 -18.28473 -17.95612 -17.80594 -17.36049 -17.16277 -16.55671 -16.13881 -15.76519 -15.53255 -15.30643 -15.09146 -14.75300 -14.47625 -14.36082 -14.27120 -14.16093 -14.05662 -13.89667 -13.85275 -13.29329 -13.15822 -13.01205 -12.77173 -12.58364 -12.28354 -12.13925 -12.00368 -11.86385 -11.78747 -11.64817 -11.48010 -11.40116 -11.20506 -11.15473 -10.87182 -10.55328 -9.91376 -9.63054 -8.95757 -8.18652 -5.49954 -0.11485 1.01513 1.20516 1.26424 1.33589 1.42156 1.83314 1.89327 2.37821 3.07029 3.10447 3.32979 3.38910 3.69694 3.72377 3.76374 3.87222 3.95661 4.04512 4.12561 4.17491 4.20181 4.33255 4.35142 4.43452 4.51534 4.58842 4.64321 4.65863 4.71017 4.79468 4.83609 4.90460 4.92791 4.98333 5.09231 5.11685 5.12705 5.24997 5.25537 5.29241 5.32377 5.42199 5.51560 5.69162 5.82306 6.10245 6.24737 6.77310 6.94933 7.24126 7.53469 8.13675 9.02096 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.004037 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.880128 B = 6934.755419 C = 8473.292116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.254 5.254 3 N -0.083 5.083 4 N -0.298 5.298 5 C 0.005 3.995 6 C -0.073 4.073 7 C 0.590 3.410 8 O -0.537 6.537 9 N -0.581 5.581 10 C 0.084 3.916 11 C -0.129 4.129 12 C -0.117 4.117 13 C -0.133 4.133 14 C 0.172 3.828 15 H 0.087 0.913 16 C -0.107 4.107 17 H 0.127 0.873 18 C -0.099 4.099 19 C 0.096 3.904 20 N -0.630 5.630 21 C -0.229 4.229 22 H 0.062 0.938 23 C -0.040 4.040 24 N -0.965 5.965 25 Si 0.955 3.045 26 H -0.277 1.277 27 H -0.308 1.308 28 H -0.265 1.265 29 C 0.136 3.864 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.234 0.766 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.021 0.979 46 H 0.262 0.738 47 H 0.040 0.960 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.205 19.670 12.370 28.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.051 5.051 3 N -0.063 5.063 4 N -0.160 5.160 5 C -0.155 4.155 6 C -0.208 4.208 7 C 0.376 3.624 8 O -0.416 6.416 9 N -0.312 5.312 10 C -0.037 4.037 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.171 4.171 14 C 0.069 3.931 15 H 0.105 0.895 16 C -0.125 4.125 17 H 0.144 0.856 18 C -0.137 4.137 19 C -0.028 4.028 20 N -0.357 5.357 21 C -0.358 4.358 22 H 0.080 0.920 23 C -0.234 4.234 24 N -0.613 5.613 25 Si 0.786 3.214 26 H -0.204 1.204 27 H -0.237 1.237 28 H -0.191 1.191 29 C 0.011 3.989 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.250 0.750 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.058 0.942 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 15.527 20.904 12.040 28.689 hybrid contribution -1.247 -1.165 -0.808 1.888 sum 14.281 19.739 11.233 26.828 Atomic orbital electron populations 1.22830 0.70121 1.07709 1.06902 1.47908 1.10711 1.03218 1.43267 1.78244 0.97077 1.12175 1.18850 1.74893 1.09347 1.13770 1.18024 1.24580 0.97538 0.91119 1.02279 1.22179 0.92133 0.90725 1.15806 1.16948 0.83861 0.82787 0.78763 1.90748 1.23433 1.80104 1.47315 1.47804 1.26702 1.05284 1.51415 1.22586 0.86764 1.01956 0.92413 1.21906 1.03609 0.95186 0.96024 1.21539 0.96405 0.96452 1.01015 1.21980 0.99454 1.01098 0.94570 1.21189 0.95804 0.78964 0.97149 0.89499 1.23134 0.97963 0.96338 0.95104 0.85619 1.22745 0.96006 0.98977 0.95945 1.22195 0.97512 0.90322 0.92800 1.44910 1.66183 1.14976 1.09639 1.18672 1.15170 0.86899 1.15017 0.92024 1.25686 0.98528 0.98790 1.00362 1.69874 1.35592 1.22760 1.33063 0.85934 0.76537 0.80327 0.78648 1.20389 1.23728 1.19081 1.21732 0.94894 0.94837 0.87436 0.86947 0.86044 0.87273 0.74982 0.87798 0.87880 0.87881 0.92517 0.90440 0.90777 0.90581 0.92265 0.90156 0.91528 0.94879 0.96119 0.92922 0.94246 0.96288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 11.25 127.77 1.44 2.35 16 2 N -0.25 -5.03 3.79 -356.77 -1.35 -6.38 16 3 N -0.08 -1.89 13.14 37.02 0.49 -1.40 16 4 N -0.30 -6.55 12.35 -57.50 -0.71 -7.26 16 5 C 0.01 0.09 9.65 84.18 0.81 0.90 16 6 C -0.07 -1.40 6.40 40.40 0.26 -1.14 16 7 C 0.59 12.49 7.35 86.61 0.64 13.13 16 8 O -0.54 -14.84 8.79 -4.07 -0.04 -14.87 16 9 N -0.58 -9.85 2.98 -799.92 -2.38 -12.24 16 10 C 0.08 0.76 5.19 86.36 0.45 1.21 16 11 C -0.13 -1.12 6.08 30.67 0.19 -0.93 16 12 C -0.12 -1.35 5.89 30.62 0.18 -1.17 16 13 C -0.13 -2.48 4.59 30.53 0.14 -2.34 16 14 C 0.17 3.66 2.67 44.83 0.12 3.78 16 15 H 0.09 1.77 7.70 -2.39 -0.02 1.75 16 16 C -0.11 -3.33 1.95 -9.61 -0.02 -3.35 16 17 H 0.13 4.25 5.11 -68.91 -0.35 3.90 16 18 C -0.10 -3.42 5.97 32.06 0.19 -3.22 16 19 C 0.10 4.40 4.66 86.93 0.40 4.80 16 20 N -0.63 -31.75 3.21 -691.55 -2.22 -33.98 16 21 C -0.23 -13.72 10.65 84.03 0.89 -12.82 16 22 H 0.06 3.96 8.06 -2.91 -0.02 3.93 16 23 C -0.04 -2.47 5.49 84.86 0.47 -2.00 16 24 N -0.96 -63.03 13.97 21.65 0.30 -62.73 16 25 Si 0.96 50.18 24.27 68.60 1.66 51.84 16 26 H -0.28 -13.95 6.55 99.48 0.65 -13.30 16 27 H -0.31 -16.15 7.11 99.48 0.71 -15.45 16 28 H -0.27 -13.56 5.96 99.48 0.59 -12.96 16 29 C 0.14 5.34 5.86 86.73 0.51 5.85 16 30 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.11 1.90 6.26 -2.38 -0.01 1.88 16 33 H 0.23 1.84 6.51 -2.91 -0.02 1.82 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.10 0.81 4.37 -2.39 -0.01 0.80 16 36 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.08 1.62 6.31 -2.39 -0.02 1.61 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 2.67 6.44 -2.39 -0.02 2.65 16 43 H 0.07 2.15 7.75 -2.39 -0.02 2.13 16 44 H 0.03 1.62 6.35 -2.39 -0.02 1.61 16 45 H 0.02 1.02 5.09 -2.39 -0.01 1.01 16 46 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 47 H 0.04 1.47 6.25 -2.39 -0.01 1.45 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -79.17 353.54 2.89 -76.28 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.48 Total: 5.70 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 6.67 Total: 5.03 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.88 Total: -123.98 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.04 Total: -14.87 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 1.66 Total: 51.84 kcal Total: -79.17 2.89 -76.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039221905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.091 kcal (2) G-P(sol) polarization free energy of solvation -79.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds