Wall clock time and date at job start Tue Mar 31 2020 17:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47698 * 2 1 4 4 N 1.28705 * 126.03663 * 277.09849 * 3 2 1 5 5 N 1.28513 * 110.63963 * 179.97438 * 4 3 2 6 6 C 1.33318 * 109.43981 * 359.72932 * 5 4 3 7 7 C 1.50699 * 126.81961 * 180.27509 * 6 5 4 8 8 C 1.37012 * 106.37106 * 0.42381 * 6 5 4 9 9 C 1.47231 * 127.18939 * 179.84921 * 8 6 5 10 10 O 1.21618 * 120.00019 * 282.39847 * 9 8 6 11 11 N 1.34772 * 119.99691 * 102.13323 * 9 8 6 12 12 C 1.46947 * 120.44040 * 174.71088 * 11 9 8 13 13 C 1.53599 * 108.52707 * 125.74554 * 12 11 9 14 14 H 1.09003 * 110.60037 * 172.77384 * 13 12 11 15 15 C 1.53366 * 108.69176 * 294.37146 * 13 12 11 16 16 C 1.53007 * 109.27891 * 60.30931 * 15 13 12 17 17 C 1.53009 * 109.79815 * 60.55663 * 16 15 13 18 18 C 1.53363 * 109.25545 * 299.42061 * 17 16 15 19 19 H 1.08998 * 110.59697 * 178.14746 * 18 17 16 20 20 C 1.46943 * 120.44520 * 354.43094 * 11 9 8 21 21 N 1.47575 * 107.76289 * 51.15934 * 13 12 11 22 22 C 1.36935 * 121.61290 * 120.49623 * 21 13 12 23 23 H 1.07994 * 119.99930 * 149.22661 * 22 21 13 24 24 C 1.38809 * 119.99850 * 329.22418 * 22 21 13 25 25 N 1.31622 * 120.00184 * 349.96064 * 24 22 21 26 26 Si 1.86800 * 120.00156 * 169.96279 * 24 22 21 27 27 H 1.48502 * 109.46871 * 59.99721 * 26 24 22 28 28 H 1.48500 * 109.47499 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46989 * 300.00057 * 26 24 22 30 30 H 1.09002 * 109.46888 * 305.02710 * 1 2 3 31 31 H 1.08998 * 109.47546 * 65.02463 * 1 2 3 32 32 H 1.08994 * 109.47062 * 185.02870 * 1 2 3 33 33 H 1.09004 * 109.46869 * 240.00144 * 2 1 3 34 34 H 1.09006 * 109.47496 * 120.00690 * 2 1 3 35 35 H 1.09003 * 109.47284 * 275.48403 * 7 6 5 36 36 H 1.09007 * 109.46879 * 35.48285 * 7 6 5 37 37 H 1.09001 * 109.47342 * 155.47848 * 7 6 5 38 38 H 1.08993 * 109.62909 * 245.46228 * 12 11 9 39 39 H 1.08998 * 109.62903 * 6.04092 * 12 11 9 40 40 H 1.09006 * 109.49880 * 180.25154 * 15 13 12 41 41 H 1.09000 * 109.50122 * 300.32827 * 15 13 12 42 42 H 1.08996 * 109.41416 * 180.65916 * 16 15 13 43 43 H 1.08996 * 109.41620 * 300.52327 * 16 15 13 44 44 H 1.09001 * 109.50821 * 59.36272 * 17 16 15 45 45 H 1.09000 * 109.50245 * 179.48610 * 17 16 15 46 46 H 1.08998 * 109.62408 * 353.94624 * 20 11 9 47 47 H 1.08997 * 109.62455 * 114.51086 * 20 11 9 48 48 H 0.96999 * 120.00478 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1496 2.1379 -1.0328 5 7 2.6020 3.2921 -0.6941 6 6 2.7824 3.3280 0.6263 7 6 3.2918 4.4918 1.4369 8 6 2.4158 2.0957 1.0998 9 6 2.4381 1.6371 2.4987 10 8 3.4904 1.3145 3.0161 11 7 1.2932 1.5799 3.2074 12 6 1.2849 1.0155 4.5642 13 6 0.6697 2.0495 5.5190 14 1 0.5295 1.6197 6.5109 15 6 1.5967 3.2695 5.5857 16 6 1.7344 3.8763 4.1879 17 6 0.3621 4.3221 3.6789 18 6 -0.5692 3.1059 3.6041 19 1 -1.5643 3.4046 3.2745 20 6 0.0378 2.0865 2.6361 21 7 -0.6168 2.4855 4.9423 22 6 -1.7975 2.3230 5.6165 23 1 -2.6035 3.0269 5.4714 24 6 -1.9584 1.2533 6.4864 25 7 -1.0622 0.2898 6.5176 26 14 -3.4467 1.1811 7.6129 27 1 -4.6862 1.1682 6.7952 28 1 -3.3848 -0.0529 8.4367 29 1 -3.4527 2.3706 8.5019 30 1 -0.3633 0.5899 0.8416 31 1 -0.3634 0.4339 -0.9315 32 1 -0.3633 -1.0237 0.0901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5140 0.8900 35 1 4.3818 4.4910 1.4286 36 1 2.9259 5.4233 1.0050 37 1 2.9363 4.4030 2.4635 38 1 0.6879 0.1037 4.5778 39 1 2.3058 0.7927 4.8743 40 1 1.1742 4.0107 6.2642 41 1 2.5776 2.9618 5.9478 42 1 2.4021 4.7367 4.2306 43 1 2.1472 3.1307 3.5083 44 1 -0.0574 5.0604 4.3623 45 1 0.4670 4.7617 2.6870 46 1 0.2391 2.5678 1.6791 47 1 -0.6594 1.2608 2.4942 48 1 -1.1744 -0.4575 7.1257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039641441.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:58 Heat of formation + Delta-G solvation = 118.066560 kcal Electronic energy + Delta-G solvation = -32206.156898 eV Core-core repulsion = 28300.260239 eV Total energy + Delta-G solvation = -3905.896660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.29611 -40.60843 -37.81179 -35.75122 -34.11870 -33.11084 -32.67611 -31.94062 -30.99307 -30.29622 -27.96067 -27.04545 -25.82298 -24.72436 -24.03290 -22.68742 -21.73479 -21.30161 -21.12384 -19.64323 -18.48797 -17.74025 -17.09412 -16.44391 -16.00935 -15.56020 -15.01534 -14.84561 -14.59920 -14.26814 -13.91666 -13.67217 -13.58551 -13.38763 -13.18962 -12.99310 -12.75988 -12.63061 -12.60347 -12.30466 -12.15771 -12.03055 -11.79408 -11.59771 -11.40225 -11.16034 -10.95616 -10.86802 -10.81456 -10.56084 -10.30420 -10.19259 -10.14989 -10.08973 -9.91465 -9.58497 -9.40197 -9.03339 -8.76743 -7.98807 -6.71355 -5.95686 -3.44148 1.31052 1.98613 2.45583 2.69768 3.26049 3.28250 3.34578 3.36086 4.22167 4.32377 4.37916 4.62752 4.63250 4.89265 4.94512 5.01966 5.20450 5.27890 5.34332 5.49539 5.55352 5.57474 5.58347 5.65410 5.69105 5.70369 5.76866 5.82017 5.93686 6.01865 6.11292 6.18060 6.22663 6.28496 6.37356 6.40720 6.45602 6.57998 6.61702 6.67950 6.75308 6.80360 6.97130 7.16688 7.46684 7.63477 7.68628 8.22578 8.26916 8.44589 9.01936 9.61260 10.23446 11.11561 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.004739 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.991646 B = 5906.516184 C = 6473.920162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.109 3.891 3 N -0.269 5.269 4 N -0.070 5.070 5 N -0.271 5.271 6 C 0.026 3.974 7 C -0.088 4.088 8 C -0.050 4.050 9 C 0.586 3.414 10 O -0.530 6.530 11 N -0.572 5.572 12 C 0.107 3.893 13 C 0.179 3.821 14 H 0.122 0.878 15 C -0.132 4.132 16 C -0.142 4.142 17 C -0.127 4.127 18 C 0.155 3.845 19 H 0.080 0.920 20 C 0.094 3.906 21 N -0.577 5.577 22 C -0.250 4.250 23 H 0.066 0.934 24 C 0.008 3.992 25 N -0.905 5.905 26 Si 0.907 3.093 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.284 1.284 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.039 0.961 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 1.338 -8.969 9.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.012 4.012 3 N -0.067 5.067 4 N -0.049 5.049 5 N -0.137 5.137 6 C -0.113 4.113 7 C -0.147 4.147 8 C -0.184 4.184 9 C 0.370 3.630 10 O -0.406 6.406 11 N -0.304 5.304 12 C -0.015 4.015 13 C 0.072 3.928 14 H 0.139 0.861 15 C -0.171 4.171 16 C -0.180 4.180 17 C -0.166 4.166 18 C 0.046 3.954 19 H 0.098 0.902 20 C -0.031 4.031 21 N -0.298 5.298 22 C -0.379 4.379 23 H 0.083 0.917 24 C -0.190 4.190 25 N -0.549 5.549 26 Si 0.737 3.263 27 H -0.210 1.210 28 H -0.216 1.216 29 H -0.210 1.210 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.262 1.028 -10.069 10.982 hybrid contribution -0.761 -0.344 1.542 1.753 sum 3.501 0.684 -8.528 9.244 Atomic orbital electron populations 1.22336 0.92331 1.04590 1.04366 1.22201 0.97000 0.76111 1.05842 1.47794 1.41297 1.13365 1.04261 1.78105 1.17284 0.97614 1.11934 1.74781 1.15452 1.11478 1.11947 1.22078 1.03286 0.94843 0.91138 1.20516 1.01509 0.93309 0.99326 1.22013 1.10675 0.94901 0.90854 1.16669 0.84613 0.78703 0.82997 1.90833 1.30050 1.49359 1.70349 1.48322 1.07114 1.57829 1.17119 1.22484 1.01379 0.98722 0.78946 1.21156 0.83376 0.89968 0.98321 0.86081 1.22109 0.99121 0.99940 0.95979 1.22214 0.96638 1.00090 0.99036 1.22002 0.96599 0.98586 0.99392 1.21122 0.96636 0.90818 0.86787 0.90173 1.22461 0.85281 0.98816 0.96529 1.44321 1.02863 1.70044 1.12595 1.19104 0.92304 1.05668 1.20814 0.91675 1.25087 0.97941 0.94872 1.01145 1.69833 1.35700 1.10101 1.39255 0.86301 0.82438 0.76999 0.80544 1.20959 1.21592 1.21007 0.90506 0.91030 0.89396 0.87307 0.87868 0.90312 0.90138 0.89032 0.89261 0.90679 0.92711 0.93377 0.94226 0.89873 0.92158 0.93477 0.91942 0.90972 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 10.24 37.15 0.38 -1.35 16 2 C 0.11 1.17 7.01 -4.04 -0.03 1.14 16 3 N -0.27 -3.85 3.39 -57.37 -0.19 -4.04 16 4 N -0.07 -1.10 13.14 60.35 0.79 -0.31 16 5 N -0.27 -4.46 12.35 33.51 0.41 -4.05 16 6 C 0.03 0.41 7.30 -82.39 -0.60 -0.19 16 7 C -0.09 -1.17 10.32 36.01 0.37 -0.80 16 8 C -0.05 -0.80 4.67 -82.33 -0.38 -1.18 16 9 C 0.59 10.19 4.12 -12.61 -0.05 10.13 16 10 O -0.53 -10.62 16.46 5.26 0.09 -10.54 16 11 N -0.57 -9.90 1.66 -173.88 -0.29 -10.19 16 12 C 0.11 2.09 5.83 -3.49 -0.02 2.07 16 13 C 0.18 3.74 2.60 -66.84 -0.17 3.57 16 14 H 0.12 2.91 5.93 -51.93 -0.31 2.60 16 15 C -0.13 -2.48 5.58 -26.54 -0.15 -2.63 16 16 C -0.14 -2.40 3.78 -26.72 -0.10 -2.51 16 17 C -0.13 -2.10 5.57 -26.54 -0.15 -2.24 16 18 C 0.15 2.81 3.61 -67.09 -0.24 2.57 16 19 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 20 C 0.09 1.55 4.45 -3.74 -0.02 1.53 16 21 N -0.58 -12.46 2.53 -155.70 -0.39 -12.86 16 22 C -0.25 -6.05 9.74 -15.06 -0.15 -6.19 16 23 H 0.07 1.58 7.85 -52.49 -0.41 1.16 16 24 C 0.01 0.20 5.15 -17.43 -0.09 0.11 16 25 N -0.90 -22.82 10.39 55.49 0.58 -22.24 16 26 Si 0.91 19.98 29.57 -169.99 -5.03 14.95 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 28 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H 0.08 0.90 4.88 -51.93 -0.25 0.64 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.12 7.71 -51.93 -0.40 0.72 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.28 3.72 -51.93 -0.19 1.08 16 38 H 0.09 1.93 7.66 -51.93 -0.40 1.53 16 39 H 0.07 1.48 6.98 -51.93 -0.36 1.12 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.62 7.35 -51.93 -0.38 0.23 16 43 H 0.08 1.44 1.57 -52.47 -0.08 1.35 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.97 6.25 -51.93 -0.32 0.64 16 47 H 0.07 1.22 6.67 -51.93 -0.35 0.87 16 48 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -27.79 356.94 -6.87 -34.66 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.82 Total: 5.21 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.40 Total: 4.02 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.91 Total: -53.68 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.79 -6.87 -34.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039641441.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.725 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds