Wall clock time and date at job start Tue Mar 31 2020 17:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47698 * 2 1 4 4 N 1.28705 * 126.03663 * 277.09849 * 3 2 1 5 5 N 1.28513 * 110.63963 * 179.97438 * 4 3 2 6 6 C 1.33318 * 109.43981 * 359.72932 * 5 4 3 7 7 C 1.50699 * 126.81961 * 180.27509 * 6 5 4 8 8 C 1.37012 * 106.37106 * 0.42381 * 6 5 4 9 9 C 1.47231 * 127.18939 * 179.84921 * 8 6 5 10 10 O 1.21618 * 120.00019 * 282.39847 * 9 8 6 11 11 N 1.34772 * 119.99691 * 102.13323 * 9 8 6 12 12 C 1.46947 * 120.44040 * 174.71088 * 11 9 8 13 13 C 1.53599 * 108.52707 * 125.74554 * 12 11 9 14 14 H 1.09003 * 110.60037 * 172.77384 * 13 12 11 15 15 C 1.53366 * 108.69176 * 294.37146 * 13 12 11 16 16 C 1.53007 * 109.27891 * 60.30931 * 15 13 12 17 17 C 1.53009 * 109.79815 * 60.55663 * 16 15 13 18 18 C 1.53363 * 109.25545 * 299.42061 * 17 16 15 19 19 H 1.08998 * 110.59697 * 178.14746 * 18 17 16 20 20 C 1.46943 * 120.44520 * 354.43094 * 11 9 8 21 21 N 1.47575 * 107.76289 * 51.15934 * 13 12 11 22 22 C 1.36935 * 121.61290 * 120.49623 * 21 13 12 23 23 H 1.07994 * 119.99930 * 149.22661 * 22 21 13 24 24 C 1.38809 * 119.99850 * 329.22418 * 22 21 13 25 25 N 1.31622 * 120.00184 * 349.96064 * 24 22 21 26 26 Si 1.86800 * 120.00156 * 169.96279 * 24 22 21 27 27 H 1.48502 * 109.46871 * 59.99721 * 26 24 22 28 28 H 1.48500 * 109.47499 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46989 * 300.00057 * 26 24 22 30 30 H 1.09002 * 109.46888 * 305.02710 * 1 2 3 31 31 H 1.08998 * 109.47546 * 65.02463 * 1 2 3 32 32 H 1.08994 * 109.47062 * 185.02870 * 1 2 3 33 33 H 1.09004 * 109.46869 * 240.00144 * 2 1 3 34 34 H 1.09006 * 109.47496 * 120.00690 * 2 1 3 35 35 H 1.09003 * 109.47284 * 275.48403 * 7 6 5 36 36 H 1.09007 * 109.46879 * 35.48285 * 7 6 5 37 37 H 1.09001 * 109.47342 * 155.47848 * 7 6 5 38 38 H 1.08993 * 109.62909 * 245.46228 * 12 11 9 39 39 H 1.08998 * 109.62903 * 6.04092 * 12 11 9 40 40 H 1.09006 * 109.49880 * 180.25154 * 15 13 12 41 41 H 1.09000 * 109.50122 * 300.32827 * 15 13 12 42 42 H 1.08996 * 109.41416 * 180.65916 * 16 15 13 43 43 H 1.08996 * 109.41620 * 300.52327 * 16 15 13 44 44 H 1.09001 * 109.50821 * 59.36272 * 17 16 15 45 45 H 1.09000 * 109.50245 * 179.48610 * 17 16 15 46 46 H 1.08998 * 109.62408 * 353.94624 * 20 11 9 47 47 H 1.08997 * 109.62455 * 114.51086 * 20 11 9 48 48 H 0.96999 * 120.00478 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1496 2.1379 -1.0328 5 7 2.6020 3.2921 -0.6941 6 6 2.7824 3.3280 0.6263 7 6 3.2918 4.4918 1.4369 8 6 2.4158 2.0957 1.0998 9 6 2.4381 1.6371 2.4987 10 8 3.4904 1.3145 3.0161 11 7 1.2932 1.5799 3.2074 12 6 1.2849 1.0155 4.5642 13 6 0.6697 2.0495 5.5190 14 1 0.5295 1.6197 6.5109 15 6 1.5967 3.2695 5.5857 16 6 1.7344 3.8763 4.1879 17 6 0.3621 4.3221 3.6789 18 6 -0.5692 3.1059 3.6041 19 1 -1.5643 3.4046 3.2745 20 6 0.0378 2.0865 2.6361 21 7 -0.6168 2.4855 4.9423 22 6 -1.7975 2.3230 5.6165 23 1 -2.6035 3.0269 5.4714 24 6 -1.9584 1.2533 6.4864 25 7 -1.0622 0.2898 6.5176 26 14 -3.4467 1.1811 7.6129 27 1 -4.6862 1.1682 6.7952 28 1 -3.3848 -0.0529 8.4367 29 1 -3.4527 2.3706 8.5019 30 1 -0.3633 0.5899 0.8416 31 1 -0.3634 0.4339 -0.9315 32 1 -0.3633 -1.0237 0.0901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5140 0.8900 35 1 4.3818 4.4910 1.4286 36 1 2.9259 5.4233 1.0050 37 1 2.9363 4.4030 2.4635 38 1 0.6879 0.1037 4.5778 39 1 2.3058 0.7927 4.8743 40 1 1.1742 4.0107 6.2642 41 1 2.5776 2.9618 5.9478 42 1 2.4021 4.7367 4.2306 43 1 2.1472 3.1307 3.5083 44 1 -0.0574 5.0604 4.3623 45 1 0.4670 4.7617 2.6870 46 1 0.2391 2.5678 1.6791 47 1 -0.6594 1.2608 2.4942 48 1 -1.1744 -0.4575 7.1257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039641441.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:57 Heat of formation + Delta-G solvation = 102.877640 kcal Electronic energy + Delta-G solvation = -32206.815539 eV Core-core repulsion = 28300.260239 eV Total energy + Delta-G solvation = -3906.555301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.48022 -42.07022 -39.31921 -36.78050 -35.71241 -34.63469 -33.99415 -33.39240 -32.10918 -31.86107 -29.14184 -28.58972 -27.23233 -25.84602 -25.56818 -24.07586 -23.17389 -22.79523 -22.21946 -20.95396 -20.08656 -19.14159 -18.32155 -17.89897 -17.25165 -16.96666 -16.67575 -16.28339 -15.89118 -15.54973 -15.38355 -15.02968 -14.91267 -14.67281 -14.52740 -14.39875 -14.14694 -13.91602 -13.64124 -13.59374 -13.41163 -13.13902 -13.05903 -13.01582 -12.73707 -12.65620 -12.54097 -12.40540 -12.24639 -12.03710 -11.89131 -11.71579 -11.65778 -11.45988 -11.16313 -11.10057 -10.95085 -10.58598 -10.23228 -9.53591 -8.43433 -7.81391 -5.30762 0.11314 0.81209 1.26618 1.39599 1.51299 1.54188 1.58392 1.89103 2.53511 3.03299 3.29708 3.34772 3.46827 3.53263 3.80995 3.84241 4.02739 4.11820 4.12896 4.15935 4.22417 4.24377 4.30705 4.43242 4.57206 4.59863 4.62452 4.69219 4.69970 4.77544 4.81164 4.82983 4.92495 4.96173 5.05014 5.09166 5.12700 5.17675 5.27451 5.31584 5.36571 5.38203 5.47677 5.64341 5.66976 5.81286 6.24781 6.44565 6.80470 7.18725 7.25806 7.83325 8.42997 9.22462 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.004739 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.991646 B = 5906.516184 C = 6473.920162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.258 5.258 4 N -0.072 5.072 5 N -0.289 5.289 6 C 0.028 3.972 7 C -0.089 4.089 8 C -0.068 4.068 9 C 0.599 3.401 10 O -0.557 6.557 11 N -0.568 5.568 12 C 0.123 3.877 13 C 0.178 3.822 14 H 0.087 0.913 15 C -0.127 4.127 16 C -0.139 4.139 17 C -0.118 4.118 18 C 0.147 3.853 19 H 0.084 0.916 20 C 0.107 3.893 21 N -0.589 5.589 22 C -0.255 4.255 23 H 0.063 0.937 24 C -0.034 4.034 25 N -0.922 5.922 26 Si 0.959 3.041 27 H -0.280 1.280 28 H -0.298 1.298 29 H -0.286 1.286 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 2.179 -10.671 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.057 5.057 4 N -0.051 5.051 5 N -0.154 5.154 6 C -0.112 4.112 7 C -0.147 4.147 8 C -0.203 4.203 9 C 0.384 3.616 10 O -0.435 6.435 11 N -0.299 5.299 12 C 0.000 4.000 13 C 0.071 3.929 14 H 0.105 0.895 15 C -0.166 4.166 16 C -0.177 4.177 17 C -0.157 4.157 18 C 0.040 3.960 19 H 0.102 0.898 20 C -0.017 4.017 21 N -0.311 5.311 22 C -0.385 4.385 23 H 0.081 0.919 24 C -0.230 4.230 25 N -0.567 5.567 26 Si 0.789 3.211 27 H -0.206 1.206 28 H -0.224 1.224 29 H -0.212 1.212 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.315 1.886 -11.807 12.712 hybrid contribution -0.773 -0.621 2.033 2.261 sum 3.543 1.265 -9.775 10.473 Atomic orbital electron populations 1.22305 0.91392 1.05613 1.03677 1.22583 0.97730 0.74614 1.07121 1.48083 1.40130 1.14107 1.03404 1.78056 1.17150 0.97717 1.12138 1.74784 1.16395 1.11970 1.12269 1.22482 1.02369 0.95281 0.91075 1.20614 1.02219 0.93304 0.98582 1.21785 1.12585 0.95591 0.90332 1.16687 0.83812 0.77671 0.83388 1.90821 1.31003 1.50489 1.71155 1.48192 1.07655 1.57740 1.16264 1.22073 1.00367 0.97509 0.80072 1.20971 0.83915 0.91012 0.96969 0.89541 1.22015 0.98546 0.98751 0.97335 1.22199 0.97336 1.00688 0.97447 1.21914 0.95656 0.97520 1.00613 1.21318 0.97634 0.91659 0.85432 0.89828 1.22336 0.84612 0.98244 0.96556 1.44421 1.02260 1.70357 1.14065 1.19305 0.93015 1.05247 1.20959 0.91914 1.25618 0.99869 0.95020 1.02533 1.69975 1.36747 1.10321 1.39648 0.85480 0.80386 0.76234 0.78993 1.20616 1.22387 1.21232 0.92534 0.90464 0.87293 0.84513 0.88173 0.89248 0.88230 0.89646 0.91603 0.91087 0.93553 0.93010 0.92213 0.90031 0.92743 0.90981 0.90212 0.91387 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 10.24 71.98 0.74 -2.23 16 2 C 0.10 1.89 7.01 86.38 0.61 2.50 16 3 N -0.26 -6.82 3.39 -335.42 -1.14 -7.96 16 4 N -0.07 -2.07 13.14 37.02 0.49 -1.58 16 5 N -0.29 -8.85 12.35 -47.88 -0.59 -9.44 16 6 C 0.03 0.82 7.30 42.05 0.31 1.12 16 7 C -0.09 -2.10 10.32 71.24 0.74 -1.37 16 8 C -0.07 -2.05 4.67 40.41 0.19 -1.86 16 9 C 0.60 20.07 4.12 86.61 0.36 20.43 16 10 O -0.56 -21.88 16.46 -4.09 -0.07 -21.95 16 11 N -0.57 -19.22 1.66 -822.28 -1.36 -20.58 16 12 C 0.12 4.88 5.83 86.50 0.50 5.38 16 13 C 0.18 7.58 2.60 45.11 0.12 7.70 16 14 H 0.09 4.31 5.93 -2.39 -0.01 4.30 16 15 C -0.13 -4.72 5.58 30.72 0.17 -4.55 16 16 C -0.14 -4.44 3.78 30.60 0.12 -4.33 16 17 C -0.12 -3.65 5.57 30.72 0.17 -3.47 16 18 C 0.15 5.16 3.61 44.95 0.16 5.32 16 19 H 0.08 2.87 8.03 -2.39 -0.02 2.86 16 20 C 0.11 3.38 4.45 86.34 0.38 3.76 16 21 N -0.59 -25.47 2.53 -646.52 -1.64 -27.10 16 22 C -0.26 -12.43 9.74 84.03 0.82 -11.61 16 23 H 0.06 3.03 7.85 -2.91 -0.02 3.01 16 24 C -0.03 -1.69 5.15 84.86 0.44 -1.25 16 25 N -0.92 -47.73 10.39 21.65 0.22 -47.50 16 26 Si 0.96 41.54 29.57 68.60 2.03 43.57 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 29 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 30 H 0.06 1.22 4.88 -2.39 -0.01 1.21 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.14 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.10 2.01 7.71 -2.38 -0.02 1.99 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.09 2.12 3.72 -2.39 -0.01 2.12 16 38 H 0.07 2.93 7.66 -2.39 -0.02 2.91 16 39 H 0.07 2.86 6.98 -2.39 -0.02 2.84 16 40 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 1.69 7.35 -2.39 -0.02 1.68 16 43 H 0.08 2.67 1.57 -3.46 -0.01 2.67 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 2.29 6.25 -2.39 -0.01 2.27 16 47 H 0.07 2.24 6.67 -2.39 -0.02 2.23 16 48 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 Total: -1.00 -59.31 356.94 4.74 -54.56 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.99 Total: 22.46 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.81 Total: 15.52 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -4.02 Total: -114.17 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.07 Total: -21.95 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -59.31 4.74 -54.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039641441.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.441 kcal (2) G-P(sol) polarization free energy of solvation -59.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds