Wall clock time and date at job start Tue Mar 31 2020 17:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47244 * 2 1 4 4 C 1.50700 * 109.47082 * 120.00375 * 2 1 3 5 5 O 1.21279 * 119.99779 * 106.88713 * 4 2 1 6 6 N 1.34768 * 120.00063 * 286.88304 * 4 2 1 7 7 C 1.48161 * 127.02396 * 185.73494 * 6 4 2 8 8 C 1.55033 * 103.31329 * 140.98437 * 7 6 4 9 9 C 1.54185 * 102.72740 * 37.01473 * 8 7 6 10 10 C 1.47617 * 127.02422 * 5.73399 * 6 4 2 11 11 C 1.52484 * 110.02376 * 219.30585 * 9 8 7 12 12 C 1.53134 * 109.58927 * 298.36846 * 11 9 8 13 13 C 1.53185 * 109.29126 * 299.50823 * 12 11 9 14 14 N 1.46935 * 108.88389 * 55.07581 * 13 12 11 15 15 C 1.36941 * 120.67632 * 125.94492 * 14 13 12 16 16 H 1.07997 * 120.00212 * 333.92993 * 15 14 13 17 17 C 1.38812 * 119.99583 * 153.93853 * 15 14 13 18 18 N 1.31613 * 119.99900 * 341.31220 * 17 15 14 19 19 Si 1.86800 * 119.99818 * 161.31709 * 17 15 14 20 20 H 1.48495 * 109.47211 * 89.99894 * 19 17 15 21 21 H 1.48500 * 109.46884 * 209.99565 * 19 17 15 22 22 H 1.48498 * 109.47349 * 329.99281 * 19 17 15 23 23 C 1.47021 * 118.64044 * 305.96805 * 14 13 12 24 24 N 1.46495 * 109.46703 * 240.00431 * 2 1 3 25 25 C 1.34434 * 126.82966 * 324.70880 * 24 2 1 26 26 N 1.30831 * 108.08243 * 179.89396 * 25 24 2 27 27 C 1.33240 * 109.82741 * 0.37997 * 26 25 24 28 28 N 1.30712 * 108.94770 * 359.76449 * 27 26 25 29 29 H 1.09003 * 109.46992 * 297.72069 * 1 2 3 30 30 H 1.09001 * 109.47218 * 57.71905 * 1 2 3 31 31 H 1.08994 * 109.47499 * 177.72583 * 1 2 3 32 32 H 1.08997 * 110.65031 * 259.44228 * 7 6 4 33 33 H 1.08999 * 110.64997 * 22.36352 * 7 6 4 34 34 H 1.08997 * 110.76611 * 278.70585 * 8 7 6 35 35 H 1.09008 * 110.76109 * 155.32020 * 8 7 6 36 36 H 1.09004 * 109.97044 * 85.96313 * 10 6 4 37 37 H 1.08996 * 110.00539 * 324.70911 * 10 6 4 38 38 H 1.09002 * 109.45007 * 178.34104 * 11 9 8 39 39 H 1.09002 * 109.44901 * 58.39685 * 11 9 8 40 40 H 1.08992 * 109.50109 * 59.45954 * 12 11 9 41 41 H 1.09007 * 109.49763 * 179.56467 * 12 11 9 42 42 H 1.08996 * 109.56884 * 174.89230 * 13 12 11 43 43 H 1.09001 * 109.57164 * 295.25808 * 13 12 11 44 44 H 0.97003 * 120.00167 * 180.02562 * 18 17 15 45 45 H 1.09003 * 109.58655 * 172.58610 * 23 14 13 46 46 H 1.09007 * 109.58362 * 292.99346 * 23 14 13 47 47 H 1.08004 * 125.95357 * 0.03987 * 25 24 2 48 48 H 1.08000 * 125.52715 * 179.72231 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.5221 -1.8159 1.1348 6 7 1.9374 -0.1175 2.4369 7 6 2.4821 -0.6161 3.7214 8 6 2.9970 0.6714 4.4146 9 6 1.9407 1.7198 4.0118 10 6 1.2695 1.1615 2.7487 11 6 2.6167 3.0527 3.7095 12 6 3.3286 3.5638 4.9653 13 6 2.3007 3.7653 6.0830 14 7 1.5666 2.5088 6.2861 15 6 1.4925 1.9358 7.5277 16 1 2.2672 2.1236 8.2562 17 6 0.4216 1.1132 7.8496 18 7 -0.6850 1.1654 7.1390 19 14 0.5512 -0.0674 9.2913 20 1 0.0833 0.6082 10.5281 21 1 -0.2920 -1.2617 9.0304 22 1 1.9653 -0.4876 9.4615 23 6 0.9136 1.8792 5.1291 24 7 2.0182 -0.6905 -1.1962 25 6 1.4587 -1.7551 -1.7969 26 7 2.1939 -2.0701 -2.8323 27 6 3.2312 -1.2384 -2.9198 28 7 3.1673 -0.3757 -1.9399 29 1 -0.3633 0.4780 0.9097 30 1 -0.3634 0.5488 -0.8688 31 1 -0.3634 -1.0268 -0.0408 32 1 1.6976 -1.0851 4.3154 33 1 3.3000 -1.3151 3.5466 34 1 3.9804 0.9481 4.0345 35 1 3.0217 0.5440 5.4970 36 1 0.2089 0.9920 2.9346 37 1 1.3952 1.8593 1.9209 38 1 1.8654 3.7783 3.3975 39 1 3.3446 2.9173 2.9095 40 1 4.0738 2.8348 5.2832 41 1 3.8178 4.5128 4.7454 42 1 2.8129 4.0418 7.0046 43 1 1.6034 4.5539 5.8001 44 1 -1.4335 0.5909 7.3642 45 1 0.5291 0.9000 5.4145 46 1 0.0937 2.5095 4.7845 47 1 0.5579 -2.2605 -1.4813 48 1 4.0004 -1.2720 -3.6772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040168204.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:39 Heat of formation + Delta-G solvation = 88.269042 kcal Electronic energy + Delta-G solvation = -30116.123987 eV Core-core repulsion = 26208.935210 eV Total energy + Delta-G solvation = -3907.188777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.25279 -40.37223 -38.68625 -35.90687 -35.18976 -33.20876 -31.64541 -31.36135 -30.42194 -29.97935 -29.12480 -26.07916 -25.48605 -25.11655 -23.28016 -22.32285 -22.05480 -21.56507 -20.82712 -19.53189 -18.23090 -17.48411 -17.24242 -16.66663 -15.98774 -15.79869 -15.24160 -14.87402 -14.78793 -14.49341 -14.26663 -14.10754 -13.89404 -13.62745 -13.25681 -13.06414 -12.90970 -12.68418 -12.60864 -12.41533 -12.26389 -11.96540 -11.86400 -11.73618 -11.19789 -11.07054 -11.02385 -10.74831 -10.54974 -10.48488 -10.26183 -10.15551 -10.12534 -9.91859 -9.87648 -9.77439 -9.51876 -9.50081 -8.65965 -8.57173 -6.80687 -5.90931 -3.30012 1.44491 1.95939 2.40728 2.85831 2.98130 3.30290 3.38969 3.40505 4.07716 4.17884 4.23408 4.40436 4.44639 4.66560 4.74910 4.98817 5.04690 5.05146 5.14518 5.22813 5.31802 5.36299 5.49966 5.51909 5.56354 5.59644 5.73229 5.82461 5.87103 6.00070 6.05349 6.10094 6.17491 6.21150 6.30457 6.37052 6.39464 6.52970 6.60058 6.67115 6.75460 6.80802 6.89630 7.17149 7.45212 7.49978 7.69935 7.93165 7.98047 8.31792 9.09602 9.73463 10.29359 11.17810 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.003152 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.295392 B = 8879.925931 C = 9545.700598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.128 0.872 4 C 0.521 3.479 5 O -0.535 6.535 6 N -0.609 5.609 7 C 0.107 3.893 8 C -0.113 4.113 9 C -0.094 4.094 10 C 0.105 3.895 11 C -0.095 4.095 12 C -0.134 4.134 13 C 0.144 3.856 14 N -0.589 5.589 15 C -0.251 4.251 16 H 0.066 0.934 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.897 3.103 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.187 3.813 24 N -0.361 5.361 25 C 0.274 3.726 26 N -0.549 5.549 27 C 0.198 3.802 28 N -0.318 5.318 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.254 0.746 45 H 0.092 0.908 46 H 0.019 0.981 47 H 0.215 0.785 48 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 0.746 -14.280 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.146 0.854 4 C 0.306 3.694 5 O -0.412 6.412 6 N -0.342 5.342 7 C -0.015 4.015 8 C -0.151 4.151 9 C -0.096 4.096 10 C -0.018 4.018 11 C -0.132 4.132 12 C -0.174 4.174 13 C 0.017 3.983 14 N -0.311 5.311 15 C -0.381 4.381 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.727 3.273 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.061 3.939 24 N -0.152 5.152 25 C -0.023 4.023 26 N -0.276 5.276 27 C -0.105 4.105 28 N -0.144 5.144 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.037 0.963 47 H 0.231 0.769 48 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.802 0.368 -14.413 14.688 hybrid contribution -0.188 -0.577 0.954 1.130 sum 2.614 -0.209 -13.460 13.713 Atomic orbital electron populations 1.22205 0.89837 1.04668 1.05463 1.21166 0.96647 0.97758 0.80845 0.85433 1.20046 0.79840 0.86095 0.83376 1.90753 1.45629 1.19312 1.85471 1.48839 1.55040 1.23344 1.06966 1.22633 0.98751 0.97648 0.82460 1.22697 0.97222 0.92678 1.02468 1.21856 0.97904 0.94607 0.95266 1.22404 0.97364 0.83934 0.98137 1.21392 0.98616 0.95959 0.97274 1.22030 0.99099 0.99625 0.96600 1.20917 0.92660 0.89003 0.95677 1.44026 1.60889 1.21379 1.04771 1.19156 1.03415 1.24604 0.90894 0.91591 1.24949 0.94549 1.01771 0.98186 1.70020 1.02707 1.40042 1.41844 0.86383 0.77578 0.80979 0.82400 1.21418 1.21538 1.20441 1.20755 0.89615 0.99828 0.83739 1.50093 1.19072 1.24390 1.21601 1.25881 0.99151 0.87666 0.89565 1.70571 1.07352 1.28840 1.20864 1.25973 0.97249 0.90175 0.97092 1.78047 1.02758 1.25443 1.08201 0.88435 0.89894 0.90623 0.90384 0.90578 0.92156 0.88003 0.90396 0.91325 0.92496 0.93530 0.92148 0.93149 0.92876 0.96494 0.93609 0.88980 0.96252 0.76910 0.76699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.82 37.16 0.33 -0.90 16 2 C 0.14 1.56 3.12 -69.08 -0.22 1.35 16 3 H 0.13 1.27 7.44 -51.93 -0.39 0.89 16 4 C 0.52 7.49 7.19 -10.99 -0.08 7.41 16 5 O -0.53 -9.77 16.58 5.56 0.09 -9.68 16 6 N -0.61 -8.52 3.30 -169.84 -0.56 -9.08 16 7 C 0.11 1.64 7.07 -2.05 -0.01 1.63 16 8 C -0.11 -1.78 5.00 -25.04 -0.13 -1.90 16 9 C -0.09 -1.45 0.63 -154.08 -0.10 -1.55 16 10 C 0.10 1.34 4.97 -3.14 -0.02 1.33 16 11 C -0.09 -1.35 4.34 -26.93 -0.12 -1.47 16 12 C -0.13 -2.06 5.89 -26.57 -0.16 -2.22 16 13 C 0.14 2.70 6.50 -3.71 -0.02 2.68 16 14 N -0.59 -13.01 2.51 -172.60 -0.43 -13.44 16 15 C -0.25 -6.27 9.59 -15.06 -0.14 -6.42 16 16 H 0.07 1.65 7.89 -52.49 -0.41 1.23 16 17 C 0.00 0.10 4.89 -17.43 -0.09 0.02 16 18 N -0.90 -24.00 11.17 55.49 0.62 -23.38 16 19 Si 0.90 20.41 29.59 -169.99 -5.03 15.38 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.19 3.76 3.67 -3.97 -0.01 3.75 16 24 N -0.36 -4.57 3.13 -57.24 -0.18 -4.75 16 25 C 0.27 3.22 11.58 -90.65 -1.05 2.17 16 26 N -0.55 -7.18 11.19 -15.83 -0.18 -7.36 16 27 C 0.20 2.42 13.03 -91.81 -1.20 1.23 16 28 N -0.32 -4.43 12.70 29.29 0.37 -4.05 16 29 H 0.10 0.70 6.41 -51.93 -0.33 0.37 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.53 7.11 -51.93 -0.37 0.16 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.19 7.91 -51.93 -0.41 0.78 16 34 H 0.06 0.91 7.63 -51.93 -0.40 0.52 16 35 H 0.10 1.88 7.48 -51.92 -0.39 1.49 16 36 H 0.08 0.99 7.19 -51.93 -0.37 0.62 16 37 H 0.07 0.72 6.70 -51.93 -0.35 0.37 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.96 7.13 -51.93 -0.37 0.59 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 45 H 0.09 2.12 6.00 -51.93 -0.31 1.81 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.21 1.73 7.26 -52.48 -0.38 1.35 16 48 H 0.22 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -31.92 375.21 -10.06 -41.98 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.41 Total: 1.62 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -3.01 Total: 7.11 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.36 Total: -62.06 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.92 -10.06 -41.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040168204.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.247 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds