Wall clock time and date at job start Tue Mar 31 2020 17:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47244 * 2 1 4 4 C 1.50700 * 109.47082 * 120.00375 * 2 1 3 5 5 O 1.21279 * 119.99779 * 106.88713 * 4 2 1 6 6 N 1.34768 * 120.00063 * 286.88304 * 4 2 1 7 7 C 1.48161 * 127.02396 * 185.73494 * 6 4 2 8 8 C 1.55033 * 103.31329 * 140.98437 * 7 6 4 9 9 C 1.54185 * 102.72740 * 37.01473 * 8 7 6 10 10 C 1.47617 * 127.02422 * 5.73399 * 6 4 2 11 11 C 1.52484 * 110.02376 * 219.30585 * 9 8 7 12 12 C 1.53134 * 109.58927 * 298.36846 * 11 9 8 13 13 C 1.53185 * 109.29126 * 299.50823 * 12 11 9 14 14 N 1.46935 * 108.88389 * 55.07581 * 13 12 11 15 15 C 1.36941 * 120.67632 * 125.94492 * 14 13 12 16 16 H 1.07997 * 120.00212 * 333.92993 * 15 14 13 17 17 C 1.38812 * 119.99583 * 153.93853 * 15 14 13 18 18 N 1.31613 * 119.99900 * 341.31220 * 17 15 14 19 19 Si 1.86800 * 119.99818 * 161.31709 * 17 15 14 20 20 H 1.48495 * 109.47211 * 89.99894 * 19 17 15 21 21 H 1.48500 * 109.46884 * 209.99565 * 19 17 15 22 22 H 1.48498 * 109.47349 * 329.99281 * 19 17 15 23 23 C 1.47021 * 118.64044 * 305.96805 * 14 13 12 24 24 N 1.46495 * 109.46703 * 240.00431 * 2 1 3 25 25 C 1.34434 * 126.82966 * 324.70880 * 24 2 1 26 26 N 1.30831 * 108.08243 * 179.89396 * 25 24 2 27 27 C 1.33240 * 109.82741 * 0.37997 * 26 25 24 28 28 N 1.30712 * 108.94770 * 359.76449 * 27 26 25 29 29 H 1.09003 * 109.46992 * 297.72069 * 1 2 3 30 30 H 1.09001 * 109.47218 * 57.71905 * 1 2 3 31 31 H 1.08994 * 109.47499 * 177.72583 * 1 2 3 32 32 H 1.08997 * 110.65031 * 259.44228 * 7 6 4 33 33 H 1.08999 * 110.64997 * 22.36352 * 7 6 4 34 34 H 1.08997 * 110.76611 * 278.70585 * 8 7 6 35 35 H 1.09008 * 110.76109 * 155.32020 * 8 7 6 36 36 H 1.09004 * 109.97044 * 85.96313 * 10 6 4 37 37 H 1.08996 * 110.00539 * 324.70911 * 10 6 4 38 38 H 1.09002 * 109.45007 * 178.34104 * 11 9 8 39 39 H 1.09002 * 109.44901 * 58.39685 * 11 9 8 40 40 H 1.08992 * 109.50109 * 59.45954 * 12 11 9 41 41 H 1.09007 * 109.49763 * 179.56467 * 12 11 9 42 42 H 1.08996 * 109.56884 * 174.89230 * 13 12 11 43 43 H 1.09001 * 109.57164 * 295.25808 * 13 12 11 44 44 H 0.97003 * 120.00167 * 180.02562 * 18 17 15 45 45 H 1.09003 * 109.58655 * 172.58610 * 23 14 13 46 46 H 1.09007 * 109.58362 * 292.99346 * 23 14 13 47 47 H 1.08004 * 125.95357 * 0.03987 * 25 24 2 48 48 H 1.08000 * 125.52715 * 179.72231 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.5221 -1.8159 1.1348 6 7 1.9374 -0.1175 2.4369 7 6 2.4821 -0.6161 3.7214 8 6 2.9970 0.6714 4.4146 9 6 1.9407 1.7198 4.0118 10 6 1.2695 1.1615 2.7487 11 6 2.6167 3.0527 3.7095 12 6 3.3286 3.5638 4.9653 13 6 2.3007 3.7653 6.0830 14 7 1.5666 2.5088 6.2861 15 6 1.4925 1.9358 7.5277 16 1 2.2672 2.1236 8.2562 17 6 0.4216 1.1132 7.8496 18 7 -0.6850 1.1654 7.1390 19 14 0.5512 -0.0674 9.2913 20 1 0.0833 0.6082 10.5281 21 1 -0.2920 -1.2617 9.0304 22 1 1.9653 -0.4876 9.4615 23 6 0.9136 1.8792 5.1291 24 7 2.0182 -0.6905 -1.1962 25 6 1.4587 -1.7551 -1.7969 26 7 2.1939 -2.0701 -2.8323 27 6 3.2312 -1.2384 -2.9198 28 7 3.1673 -0.3757 -1.9399 29 1 -0.3633 0.4780 0.9097 30 1 -0.3634 0.5488 -0.8688 31 1 -0.3634 -1.0268 -0.0408 32 1 1.6976 -1.0851 4.3154 33 1 3.3000 -1.3151 3.5466 34 1 3.9804 0.9481 4.0345 35 1 3.0217 0.5440 5.4970 36 1 0.2089 0.9920 2.9346 37 1 1.3952 1.8593 1.9209 38 1 1.8654 3.7783 3.3975 39 1 3.3446 2.9173 2.9095 40 1 4.0738 2.8348 5.2832 41 1 3.8178 4.5128 4.7454 42 1 2.8129 4.0418 7.0046 43 1 1.6034 4.5539 5.8001 44 1 -1.4335 0.5909 7.3642 45 1 0.5291 0.9000 5.4145 46 1 0.0937 2.5095 4.7845 47 1 0.5579 -2.2605 -1.4813 48 1 4.0004 -1.2720 -3.6772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040168204.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:39 Heat of formation + Delta-G solvation = 70.962135 kcal Electronic energy + Delta-G solvation = -30116.874471 eV Core-core repulsion = 26208.935210 eV Total energy + Delta-G solvation = -3907.939261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.14753 -41.56591 -39.95896 -37.32272 -36.10135 -34.85216 -32.89682 -32.37568 -31.79798 -31.26183 -30.20073 -27.31687 -27.12427 -26.10388 -24.42886 -23.88186 -22.96288 -22.54998 -22.24334 -20.57459 -19.65664 -18.65003 -18.30912 -18.15956 -17.24610 -16.81508 -16.56644 -16.17255 -15.78057 -15.74059 -15.60875 -15.26877 -15.10488 -14.96005 -14.59680 -14.31697 -14.10738 -13.76728 -13.58454 -13.42117 -13.38946 -13.20864 -13.15590 -12.92628 -12.67017 -12.56469 -12.50036 -12.35436 -12.14991 -11.80865 -11.63387 -11.60899 -11.33687 -11.13181 -11.07710 -10.98263 -10.80807 -10.57858 -10.46434 -9.84232 -8.62384 -7.84555 -5.23912 0.53472 1.10189 1.33080 1.45548 1.50145 1.56686 1.87803 2.00446 2.53134 3.12574 3.29480 3.40634 3.44064 3.51871 3.70064 3.79786 3.86469 3.94983 3.95830 4.23869 4.26617 4.31210 4.35794 4.42976 4.52014 4.57607 4.61825 4.65932 4.73770 4.80964 4.87335 4.96058 5.01518 5.06080 5.12902 5.21128 5.22355 5.31171 5.36253 5.41748 5.44701 5.53270 5.64673 5.71482 5.76359 5.82260 6.37406 6.43127 6.83830 7.06040 7.20636 7.93131 8.42634 9.21212 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.003152 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.295392 B = 8879.925931 C = 9545.700598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.143 0.857 4 C 0.520 3.480 5 O -0.579 6.579 6 N -0.604 5.604 7 C 0.109 3.891 8 C -0.103 4.103 9 C -0.087 4.087 10 C 0.110 3.890 11 C -0.091 4.091 12 C -0.125 4.125 13 C 0.139 3.861 14 N -0.605 5.605 15 C -0.252 4.252 16 H 0.061 0.939 17 C -0.041 4.041 18 N -0.927 5.927 19 Si 0.949 3.051 20 H -0.289 1.289 21 H -0.295 1.295 22 H -0.275 1.275 23 C 0.198 3.802 24 N -0.369 5.369 25 C 0.273 3.727 26 N -0.573 5.573 27 C 0.196 3.804 28 N -0.350 5.350 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.248 0.752 45 H 0.058 0.942 46 H 0.002 0.998 47 H 0.243 0.757 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 1.784 -16.238 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 H 0.161 0.839 4 C 0.308 3.692 5 O -0.459 6.459 6 N -0.337 5.337 7 C -0.013 4.013 8 C -0.141 4.141 9 C -0.089 4.089 10 C -0.012 4.012 11 C -0.129 4.129 12 C -0.164 4.164 13 C 0.013 3.987 14 N -0.328 5.328 15 C -0.383 4.383 16 H 0.079 0.921 17 C -0.237 4.237 18 N -0.573 5.573 19 Si 0.778 3.222 20 H -0.217 1.217 21 H -0.221 1.221 22 H -0.200 1.200 23 C 0.073 3.927 24 N -0.159 5.159 25 C -0.024 4.024 26 N -0.300 5.300 27 C -0.106 4.106 28 N -0.177 5.177 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.020 0.980 47 H 0.259 0.741 48 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.211 1.446 -16.374 16.749 hybrid contribution -0.280 -0.879 1.610 1.856 sum 2.930 0.567 -14.765 15.063 Atomic orbital electron populations 1.22271 0.87072 1.05589 1.06786 1.21325 0.98550 0.97427 0.78490 0.83933 1.20724 0.78799 0.85620 0.84098 1.90733 1.47610 1.21393 1.86118 1.48824 1.54779 1.23567 1.06509 1.22451 0.98157 0.97417 0.83317 1.22524 0.98020 0.93033 1.00537 1.21653 0.96618 0.95872 0.94790 1.22408 0.96926 0.83883 0.97992 1.21396 0.99251 0.94887 0.97326 1.21913 0.97846 1.01001 0.95629 1.21067 0.93114 0.87514 0.96986 1.44269 1.61281 1.22819 1.04465 1.19370 1.02747 1.24181 0.91970 0.92148 1.25480 0.94568 1.03319 1.00362 1.70136 1.03111 1.40825 1.43246 0.85559 0.77387 0.79146 0.80073 1.21650 1.22124 1.19980 1.20514 0.90363 0.97316 0.84552 1.50214 1.18938 1.24850 1.21877 1.26515 0.99635 0.87224 0.88981 1.70597 1.08079 1.29539 1.21833 1.26629 0.97483 0.89327 0.97181 1.77981 1.03858 1.26710 1.09144 0.87799 0.87682 0.90117 0.91952 0.91136 0.90875 0.91124 0.90203 0.87585 0.91296 0.90991 0.92903 0.90288 0.93586 0.96586 0.94243 0.92410 0.97996 0.74089 0.73837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.82 71.98 0.64 -1.22 16 2 C 0.15 2.84 3.12 44.25 0.14 2.97 16 3 H 0.14 2.30 7.44 -2.39 -0.02 2.28 16 4 C 0.52 14.09 7.19 87.66 0.63 14.72 16 5 O -0.58 -20.79 16.58 -3.03 -0.05 -20.84 16 6 N -0.60 -15.99 3.30 -809.66 -2.67 -18.66 16 7 C 0.11 3.36 7.07 86.76 0.61 3.97 16 8 C -0.10 -3.20 5.00 31.69 0.16 -3.04 16 9 C -0.09 -2.56 0.63 -51.90 -0.03 -2.59 16 10 C 0.11 2.55 4.97 86.35 0.43 2.98 16 11 C -0.09 -2.28 4.34 30.47 0.13 -2.15 16 12 C -0.13 -3.51 5.89 30.70 0.18 -3.33 16 13 C 0.14 5.09 6.50 86.36 0.56 5.65 16 14 N -0.61 -26.99 2.51 -699.98 -1.76 -28.75 16 15 C -0.25 -12.84 9.59 84.03 0.81 -12.04 16 16 H 0.06 3.07 7.89 -2.91 -0.02 3.05 16 17 C -0.04 -2.17 4.89 84.86 0.42 -1.75 16 18 N -0.93 -50.70 11.17 21.65 0.24 -50.46 16 19 Si 0.95 42.96 29.59 68.60 2.03 44.99 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.20 8.04 3.67 86.15 0.32 8.35 16 24 N -0.37 -8.54 3.13 -335.02 -1.05 -9.59 16 25 C 0.27 5.88 11.58 180.36 2.09 7.97 16 26 N -0.57 -14.08 11.19 -204.00 -2.28 -16.36 16 27 C 0.20 4.48 13.03 180.77 2.36 6.84 16 28 N -0.35 -9.14 12.70 -61.25 -0.78 -9.92 16 29 H 0.10 1.12 6.41 -2.39 -0.02 1.11 16 30 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.88 7.11 -2.39 -0.02 0.87 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 2.24 7.91 -2.39 -0.02 2.22 16 34 H 0.07 2.09 7.63 -2.39 -0.02 2.07 16 35 H 0.07 2.67 7.48 -2.38 -0.02 2.65 16 36 H 0.08 1.88 7.19 -2.38 -0.02 1.86 16 37 H 0.11 1.73 6.70 -2.39 -0.02 1.71 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.58 7.13 -2.39 -0.02 1.56 16 41 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.05 1.71 7.93 -2.39 -0.02 1.69 16 43 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 45 H 0.06 2.75 6.00 -2.39 -0.01 2.74 16 46 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 47 H 0.24 3.34 7.26 -2.91 -0.02 3.31 16 48 H 0.25 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -71.25 375.21 4.07 -67.18 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.96 Total: 15.06 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 9.43 Total: 27.34 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -8.29 Total: -133.74 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.05 Total: -20.84 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -71.25 4.07 -67.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040168204.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.144 kcal (2) G-P(sol) polarization free energy of solvation -71.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds