Wall clock time and date at job start Tue Mar 31 2020 17:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46974 * 2 1 4 4 N 1.28717 * 126.03559 * 264.77151 * 3 2 1 5 5 N 1.28510 * 110.63577 * 180.26829 * 4 3 2 6 6 C 1.33318 * 109.43910 * 359.75085 * 5 4 3 7 7 C 1.36995 * 106.37487 * 0.02562 * 6 5 4 8 8 C 1.47239 * 127.19157 * 179.97438 * 7 6 5 9 9 O 1.21619 * 120.00091 * 190.42920 * 8 7 6 10 10 N 1.34778 * 119.99428 * 10.42231 * 8 7 6 11 11 C 1.48151 * 127.02910 * 1.26647 * 10 8 7 12 12 C 1.55038 * 103.31401 * 141.01364 * 11 10 8 13 13 C 1.54181 * 102.72255 * 37.01364 * 12 11 10 14 14 C 1.47614 * 127.01687 * 181.30679 * 10 8 7 15 15 C 1.52490 * 110.01864 * 219.30721 * 13 12 11 16 16 C 1.53131 * 109.61228 * 298.39794 * 15 13 12 17 17 C 1.53197 * 109.32068 * 299.47784 * 16 15 13 18 18 N 1.47011 * 108.84567 * 55.06157 * 17 16 15 19 19 C 1.36935 * 120.66426 * 126.00674 * 18 17 16 20 20 H 1.07995 * 120.00067 * 330.10095 * 19 18 17 21 21 C 1.38813 * 119.99761 * 150.09938 * 19 18 17 22 22 N 1.31613 * 120.00333 * 342.46348 * 21 19 18 23 23 Si 1.86800 * 119.99929 * 162.45975 * 21 19 18 24 24 H 1.48495 * 109.47148 * 89.99918 * 23 21 19 25 25 H 1.48496 * 109.47306 * 210.00405 * 23 21 19 26 26 H 1.48508 * 109.47055 * 330.00220 * 23 21 19 27 27 C 1.47036 * 118.65130 * 305.98388 * 18 17 16 28 28 H 1.08996 * 109.47147 * 175.31336 * 1 2 3 29 29 H 1.08996 * 109.47509 * 295.31743 * 1 2 3 30 30 H 1.09006 * 109.46954 * 55.31722 * 1 2 3 31 31 H 1.08998 * 109.47438 * 239.99663 * 2 1 3 32 32 H 1.09005 * 109.46673 * 119.99500 * 2 1 3 33 33 H 1.08001 * 126.80783 * 180.02562 * 6 5 4 34 34 H 1.08996 * 110.65322 * 259.47646 * 11 10 8 35 35 H 1.09004 * 110.64966 * 22.39475 * 11 10 8 36 36 H 1.08988 * 110.76443 * 278.70483 * 12 11 10 37 37 H 1.09000 * 110.76116 * 155.31664 * 12 11 10 38 38 H 1.08998 * 109.97615 * 85.94029 * 14 10 8 39 39 H 1.08998 * 109.97880 * 324.66343 * 14 10 8 40 40 H 1.09000 * 109.44845 * 178.35765 * 15 13 12 41 41 H 1.08995 * 109.42700 * 58.42503 * 15 13 12 42 42 H 1.09001 * 109.49904 * 59.43446 * 16 15 13 43 43 H 1.08997 * 109.50608 * 179.51107 * 16 15 13 44 44 H 1.08997 * 109.56420 * 174.91633 * 17 16 15 45 45 H 1.08997 * 109.56574 * 295.26936 * 17 16 15 46 46 H 0.97003 * 120.00848 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58415 * 293.00311 * 27 18 17 48 48 H 1.09003 * 109.69570 * 172.65736 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3601 2.0636 -1.0365 5 7 2.7491 3.2402 -0.6962 6 6 2.6648 3.3696 0.6280 7 6 2.1897 2.1758 1.1033 8 6 1.9238 1.8190 2.5068 9 8 1.6837 0.6649 2.8059 10 7 1.9466 2.7715 3.4601 11 6 2.1942 4.2196 3.2687 12 6 1.2003 4.8853 4.2549 13 6 1.2243 3.9250 5.4609 14 6 1.7306 2.5848 4.9083 15 6 -0.1812 3.7680 6.0312 16 6 -0.6910 5.1255 6.5232 17 6 0.2392 5.6481 7.6226 18 7 1.6147 5.6812 7.1048 19 6 2.3540 6.8326 7.1597 20 1 1.8621 7.7929 7.1128 21 6 3.7356 6.7653 7.2756 22 7 4.3090 5.6500 7.6749 23 14 4.7811 8.2578 6.8647 24 1 4.9675 9.0828 8.0853 25 1 6.1052 7.8115 6.3619 26 1 4.1017 9.0657 5.8202 27 6 2.1805 4.4530 6.5274 28 1 -0.3633 -1.0242 -0.0840 29 1 -0.3634 0.4394 0.9289 30 1 -0.3633 0.5848 -0.8451 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9203 4.2425 1.2104 34 1 3.2220 4.4717 3.5298 35 1 1.9765 4.5144 2.2421 36 1 0.2017 4.9363 3.8215 37 1 1.5485 5.8770 4.5438 38 1 2.6684 2.3130 5.3927 39 1 0.9853 1.8074 5.0766 40 1 -0.1585 3.0653 6.8642 41 1 -0.8470 3.3898 5.2554 42 1 -0.7052 5.8315 5.6928 43 1 -1.6989 5.0129 6.9224 44 1 -0.0670 6.6531 7.9126 45 1 0.1904 4.9860 8.4871 46 1 5.2746 5.6028 7.7556 47 1 2.3040 3.7046 7.3102 48 1 3.1478 4.6715 6.0749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040197112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:07 Heat of formation + Delta-G solvation = 81.903723 kcal Electronic energy + Delta-G solvation = -30247.365503 eV Core-core repulsion = 26339.900705 eV Total energy + Delta-G solvation = -3907.464798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.47806 -41.45710 -39.75010 -37.47537 -36.40385 -34.91112 -33.42387 -32.15987 -31.85649 -31.65131 -30.53537 -27.52676 -27.16974 -25.69275 -25.08855 -23.93529 -23.62113 -23.29306 -21.95765 -20.77810 -19.70367 -18.66536 -18.32730 -18.03662 -17.62877 -17.05147 -16.87116 -16.59419 -15.97392 -15.70061 -15.56488 -15.17062 -15.07306 -14.90513 -14.51920 -14.24105 -14.07700 -14.03231 -13.59308 -13.45129 -13.21319 -13.17035 -13.02323 -12.89506 -12.68236 -12.60001 -12.47744 -12.31327 -12.10515 -12.06414 -11.81096 -11.60848 -11.42225 -11.30959 -11.26892 -11.09831 -10.95607 -10.66492 -10.47424 -9.85929 -8.57393 -7.81792 -5.26675 -0.23170 0.92384 1.12767 1.50323 1.54450 1.61925 1.81142 1.86317 2.56488 3.03062 3.27414 3.32753 3.58152 3.60987 3.68511 3.74477 3.85963 3.88719 3.98860 4.20976 4.23650 4.28877 4.32800 4.38659 4.48663 4.59753 4.61620 4.62550 4.73928 4.75495 4.79315 4.89293 4.90292 4.96145 5.05796 5.06562 5.15905 5.22949 5.30917 5.31844 5.37720 5.44210 5.53216 5.64591 5.73469 5.79215 6.27303 6.45916 6.74796 7.17532 7.22225 7.92730 8.46561 9.24222 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.003573 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.315406 B = 7834.639701 C = 8883.377212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.096 3.904 3 N -0.248 5.248 4 N -0.071 5.071 5 N -0.297 5.297 6 C -0.005 4.005 7 C -0.071 4.071 8 C 0.612 3.388 9 O -0.563 6.563 10 N -0.594 5.594 11 C 0.080 3.920 12 C -0.105 4.105 13 C -0.085 4.085 14 C 0.128 3.872 15 C -0.091 4.091 16 C -0.121 4.121 17 C 0.138 3.862 18 N -0.602 5.602 19 C -0.255 4.255 20 H 0.065 0.935 21 C -0.040 4.040 22 N -0.931 5.931 23 Si 0.954 3.046 24 H -0.292 1.292 25 H -0.296 1.296 26 H -0.266 1.266 27 C 0.204 3.796 28 H 0.114 0.886 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.007 0.993 46 H 0.248 0.752 47 H -0.011 1.011 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 -8.664 -13.025 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.023 4.023 3 N -0.046 5.046 4 N -0.051 5.051 5 N -0.159 5.159 6 C -0.165 4.165 7 C -0.206 4.206 8 C 0.399 3.601 9 O -0.443 6.443 10 N -0.325 5.325 11 C -0.041 4.041 12 C -0.143 4.143 13 C -0.087 4.087 14 C 0.005 3.995 15 C -0.129 4.129 16 C -0.160 4.160 17 C 0.012 3.988 18 N -0.325 5.325 19 C -0.385 4.385 20 H 0.082 0.918 21 C -0.236 4.236 22 N -0.577 5.577 23 Si 0.783 3.217 24 H -0.220 1.220 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.078 3.922 28 H 0.132 0.868 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.245 0.755 34 H 0.099 0.901 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.025 0.975 46 H 0.057 0.943 47 H 0.007 0.993 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.056 -9.406 -14.445 19.472 hybrid contribution 1.030 0.619 1.618 2.016 sum -8.026 -8.788 -12.827 17.498 Atomic orbital electron populations 1.22071 0.91635 1.05532 1.02290 1.22710 0.97561 0.74393 1.07595 1.48187 1.39175 1.14154 1.03065 1.78182 1.14586 1.00258 1.12114 1.74907 1.17892 1.09639 1.13495 1.24911 1.01300 0.98700 0.91619 1.21801 1.13827 0.94208 0.90732 1.16241 0.77485 0.84096 0.82283 1.90768 1.51815 1.19125 1.82554 1.48464 1.67892 1.08790 1.07367 1.23324 1.00779 0.78028 1.02009 1.22582 0.99250 0.99055 0.93413 1.21637 0.97352 0.93163 0.96590 1.22037 1.01009 0.98248 0.78189 1.21370 0.94068 0.97479 0.99947 1.21898 0.98425 0.96639 0.99053 1.21094 0.85148 0.98389 0.94142 1.44240 1.11317 1.08538 1.68431 1.19381 0.88964 0.86442 1.43738 0.91771 1.25663 0.98800 0.98921 1.00189 1.70171 1.09210 1.28306 1.50030 0.85491 0.78239 0.79969 0.78033 1.21955 1.22218 1.19038 1.20393 0.94422 0.86218 0.91200 0.86797 0.93271 0.91715 0.84837 0.86714 0.75539 0.90121 0.86828 0.89933 0.90056 0.92189 0.90036 0.92781 0.91095 0.91822 0.90437 0.93061 0.97473 0.94307 0.99302 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.24 71.98 0.74 -1.49 16 2 C 0.10 1.60 6.58 86.38 0.57 2.17 16 3 N -0.25 -5.84 3.39 -335.42 -1.14 -6.97 16 4 N -0.07 -1.88 13.14 37.02 0.49 -1.39 16 5 N -0.30 -8.21 12.35 -57.51 -0.71 -8.92 16 6 C -0.01 -0.12 10.38 84.18 0.87 0.75 16 7 C -0.07 -1.81 6.91 40.41 0.28 -1.53 16 8 C 0.61 17.04 7.87 86.61 0.68 17.73 16 9 O -0.56 -17.64 15.31 -4.09 -0.06 -17.70 16 10 N -0.59 -16.10 3.30 -813.76 -2.68 -18.78 16 11 C 0.08 1.96 5.91 86.76 0.51 2.47 16 12 C -0.10 -2.92 5.00 31.69 0.16 -2.76 16 13 C -0.08 -2.66 0.63 -51.88 -0.03 -2.70 16 14 C 0.13 3.80 6.29 86.35 0.54 4.35 16 15 C -0.09 -2.54 4.33 30.47 0.13 -2.41 16 16 C -0.12 -3.48 5.88 30.70 0.18 -3.30 16 17 C 0.14 5.19 6.50 86.35 0.56 5.75 16 18 N -0.60 -27.21 2.49 -699.62 -1.74 -28.95 16 19 C -0.25 -12.85 9.56 84.03 0.80 -12.05 16 20 H 0.06 3.18 7.89 -2.91 -0.02 3.16 16 21 C -0.04 -2.07 4.89 84.86 0.41 -1.65 16 22 N -0.93 -52.04 11.39 21.65 0.25 -51.79 16 23 Si 0.95 42.23 29.59 68.60 2.03 44.26 16 24 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 25 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 C 0.20 8.67 3.63 86.16 0.31 8.98 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 2.10 6.59 -2.38 -0.02 2.09 16 33 H 0.23 4.31 5.05 -2.91 -0.01 4.29 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.11 2.19 4.59 -2.38 -0.01 2.18 16 36 H 0.08 2.00 7.63 -2.39 -0.02 1.98 16 37 H 0.08 2.71 7.48 -2.39 -0.02 2.69 16 38 H 0.06 1.98 7.67 -2.39 -0.02 1.96 16 39 H 0.08 2.34 7.59 -2.39 -0.02 2.32 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 1.81 7.13 -2.39 -0.02 1.80 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 1.92 7.94 -2.39 -0.02 1.90 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 47 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 48 H 0.05 2.67 6.28 -2.39 -0.01 2.66 16 Total: -1.00 -64.48 372.42 4.12 -60.36 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.97 Total: 15.58 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 6.73 Total: 14.30 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -5.54 Total: -116.81 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.06 Total: -17.70 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -64.48 4.12 -60.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040197112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.268 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds