Wall clock time and date at job start Tue Mar 31 2020 17:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46507 * 109.46807 * 2 1 4 4 C 1.34814 * 126.58978 * 125.00462 * 3 2 1 5 5 C 1.36595 * 106.83663 * 179.97438 * 4 3 2 6 6 C 1.47527 * 125.77193 * 179.97438 * 5 4 3 7 7 O 1.21592 * 119.99645 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00276 * 179.97438 * 6 5 4 9 9 C 1.48160 * 127.02528 * 0.05065 * 8 6 5 10 10 C 1.55038 * 103.31768 * 140.94081 * 9 8 6 11 11 C 1.54156 * 102.73105 * 36.98805 * 10 9 8 12 12 C 1.47608 * 127.02727 * 180.02562 * 8 6 5 13 13 C 1.52495 * 110.05757 * 219.39136 * 11 10 9 14 14 C 1.53125 * 109.58272 * 178.27389 * 13 11 10 15 15 C 1.53123 * 109.32521 * 60.52172 * 14 13 11 16 16 N 1.46939 * 108.87946 * 304.91789 * 15 14 13 17 17 C 1.36928 * 120.68390 * 234.04008 * 16 15 14 18 18 H 1.08008 * 120.00279 * 152.57839 * 17 16 15 19 19 C 1.38810 * 120.00031 * 332.58459 * 17 16 15 20 20 N 1.31626 * 120.00117 * 159.33665 * 19 17 16 21 21 Si 1.86798 * 120.00223 * 339.33406 * 19 17 16 22 22 H 1.48497 * 109.47502 * 93.10434 * 21 19 17 23 23 H 1.48500 * 109.47414 * 213.10961 * 21 19 17 24 24 H 1.48506 * 109.47078 * 333.10546 * 21 19 17 25 25 C 1.47040 * 118.63460 * 54.01831 * 16 15 14 26 26 N 1.34396 * 108.46063 * 0.24266 * 5 4 3 27 27 N 1.28765 * 109.52088 * 359.58430 * 26 5 4 28 28 H 1.08998 * 109.46762 * 300.00125 * 1 2 3 29 29 H 1.08995 * 109.47134 * 59.99707 * 1 2 3 30 30 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47133 * 240.00510 * 2 1 3 32 32 H 1.09000 * 109.47110 * 119.99789 * 2 1 3 33 33 H 1.08000 * 126.58164 * 359.97438 * 4 3 2 34 34 H 1.09001 * 110.65107 * 259.39959 * 9 8 6 35 35 H 1.09003 * 110.65189 * 22.31726 * 9 8 6 36 36 H 1.09008 * 110.76032 * 278.68348 * 10 9 8 37 37 H 1.08992 * 110.76036 * 155.30402 * 10 9 8 38 38 H 1.08999 * 109.96908 * 86.03840 * 12 8 6 39 39 H 1.08999 * 110.00418 * 324.78177 * 12 8 6 40 40 H 1.08998 * 109.45248 * 298.29830 * 13 11 10 41 41 H 1.09003 * 109.44832 * 58.24509 * 13 11 10 42 42 H 1.08997 * 109.50397 * 180.44327 * 14 13 11 43 43 H 1.08999 * 109.50047 * 300.54922 * 14 13 11 44 44 H 1.08995 * 109.57755 * 185.09919 * 15 14 13 45 45 H 1.09001 * 109.67380 * 64.79040 * 15 14 13 46 46 H 0.97006 * 119.99822 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.58477 * 187.41544 * 25 16 15 48 48 H 1.08998 * 109.69698 * 67.06783 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8716 1.9320 0.8866 5 6 3.0508 3.2322 0.5082 6 6 3.9076 4.2193 1.1924 7 8 4.5312 3.8981 2.1855 8 7 3.9998 5.4767 0.7160 9 6 3.3135 6.0327 -0.4735 10 6 2.9237 7.4644 -0.0243 11 6 4.1289 7.8900 0.8375 12 6 4.8047 6.5815 1.2731 13 6 3.6502 8.6713 2.0565 14 6 4.8516 9.0513 2.9267 15 6 5.8083 9.9286 2.1145 16 7 6.1705 9.2198 0.8793 17 6 7.4839 9.0182 0.5489 18 1 7.7637 8.1715 -0.0605 19 6 8.4560 9.9019 0.9973 20 7 9.7162 9.5250 1.0454 21 14 7.9757 11.6259 1.5325 22 1 7.7341 11.6402 2.9976 23 1 9.0730 12.5704 1.2025 24 1 6.7379 12.0377 0.8227 25 6 5.0935 8.7312 0.0056 26 7 2.3102 3.4619 -0.5895 27 7 1.6886 2.3844 -0.9224 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3262 1.4397 1.7336 34 1 3.9912 6.0685 -1.3265 35 1 2.4259 5.4474 -0.7138 36 1 2.0103 7.4475 0.5704 37 1 2.8129 8.1229 -0.8857 38 1 5.8201 6.5376 0.8794 39 1 4.8242 6.5168 2.3610 40 1 3.1383 9.5763 1.7295 41 1 2.9630 8.0548 2.6359 42 1 4.5073 9.6028 3.8015 43 1 5.3696 8.1472 3.2466 44 1 6.7070 10.1267 2.6985 45 1 5.3200 10.8706 1.8650 46 1 10.3956 10.1427 1.3584 47 1 5.5180 8.1199 -0.7907 48 1 4.5600 9.5770 -0.4281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040469980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:21 Heat of formation + Delta-G solvation = 98.322530 kcal Electronic energy + Delta-G solvation = -29535.478595 eV Core-core repulsion = 25628.725770 eV Total energy + Delta-G solvation = -3906.752825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40812 -40.07071 -38.30213 -35.99512 -35.72530 -33.08360 -31.62778 -31.49948 -30.83594 -30.44640 -28.86006 -26.27952 -25.30879 -24.95819 -23.75474 -22.68820 -22.03330 -21.83164 -20.83758 -19.68201 -18.19336 -17.66945 -16.74200 -16.42688 -16.39708 -15.81265 -15.50713 -15.28132 -14.85907 -14.69263 -14.20798 -14.02257 -13.63956 -13.47977 -13.36110 -13.09278 -12.98812 -12.87697 -12.74617 -12.36767 -12.26464 -12.08398 -11.92298 -11.76420 -11.61864 -11.34950 -11.13738 -10.90113 -10.75395 -10.63865 -10.43958 -10.24340 -9.99944 -9.94122 -9.72127 -9.58598 -9.47377 -9.36110 -8.55437 -8.39629 -6.92369 -5.89828 -3.25571 0.92566 1.61876 1.73908 3.09062 3.35086 3.36586 3.52293 3.55366 3.90295 4.03247 4.27828 4.44627 4.54677 4.57811 4.72466 4.83366 4.92329 4.94250 4.98870 5.08303 5.15550 5.23114 5.39410 5.40351 5.52575 5.58410 5.59851 5.68685 5.79873 5.93066 6.05082 6.07124 6.09347 6.11619 6.24273 6.27518 6.37076 6.43465 6.47163 6.55794 6.62143 6.70536 6.76746 6.82068 7.00977 7.66649 7.77949 8.00535 8.27319 8.37457 8.98522 9.77039 10.14886 11.26064 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.002710 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.903078 B =10331.205608 C =10617.383976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.362 5.362 4 C 0.090 3.910 5 C -0.089 4.089 6 C 0.615 3.385 7 O -0.543 6.543 8 N -0.603 5.603 9 C 0.092 3.908 10 C -0.124 4.124 11 C -0.087 4.087 12 C 0.126 3.874 13 C -0.094 4.094 14 C -0.139 4.139 15 C 0.125 3.875 16 N -0.604 5.604 17 C -0.257 4.257 18 H 0.085 0.915 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.883 3.117 22 H -0.289 1.289 23 H -0.305 1.305 24 H -0.271 1.271 25 C 0.164 3.836 26 N -0.203 5.203 27 N -0.068 5.068 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.204 0.796 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.024 0.976 46 H 0.262 0.738 47 H 0.064 0.936 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.532 -17.056 -1.257 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.148 5.148 4 C -0.066 4.066 5 C -0.229 4.229 6 C 0.401 3.599 7 O -0.421 6.421 8 N -0.334 5.334 9 C -0.031 4.031 10 C -0.163 4.163 11 C -0.089 4.089 12 C 0.005 3.995 13 C -0.131 4.131 14 C -0.179 4.179 15 C 0.000 4.000 16 N -0.328 5.328 17 C -0.385 4.385 18 H 0.103 0.897 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.196 1.196 25 C 0.037 3.963 26 N -0.077 5.077 27 N -0.048 5.048 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.221 0.779 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -20.819 -16.986 -1.933 26.938 hybrid contribution 0.437 0.614 1.214 1.429 sum -20.382 -16.372 -0.719 26.153 Atomic orbital electron populations 1.22088 0.92746 1.03662 1.04060 1.22036 0.96848 0.76259 1.05146 1.50583 1.31851 1.12332 1.20027 1.23371 0.93167 0.94064 0.96045 1.21478 1.07373 0.94957 0.99051 1.16301 0.80561 0.80074 0.82965 1.90818 1.46829 1.78439 1.25981 1.48652 1.46441 1.09392 1.28945 1.22915 0.98348 0.94190 0.87629 1.22750 0.97749 0.95780 1.00044 1.21633 0.95545 0.95072 0.96692 1.22182 0.94859 0.82948 0.99507 1.21372 0.97232 0.99085 0.95443 1.22084 0.96882 1.01162 0.97734 1.21317 0.97252 0.93333 0.88107 1.44368 1.02543 1.66603 1.19261 1.18886 0.80415 1.07371 1.31855 0.89748 1.25269 0.94915 0.98010 0.99371 1.69850 1.00625 1.35362 1.49283 0.86939 0.77253 0.86687 0.77695 1.21720 1.23344 1.19592 1.20923 0.88661 0.94904 0.91772 1.74618 1.05041 1.17643 1.10363 1.81954 1.20747 0.90311 1.11799 0.91700 0.90689 0.89902 0.88323 0.87681 0.77893 0.90932 0.87797 0.91205 0.89931 0.89802 0.90636 0.92211 0.92955 0.92794 0.91480 0.91095 0.95800 0.92841 0.91733 0.95510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.12 37.16 0.38 -0.23 16 2 C 0.12 0.46 7.26 -4.03 -0.03 0.43 16 3 N -0.36 -3.13 3.69 -61.05 -0.23 -3.35 16 4 C 0.09 0.89 11.27 -16.84 -0.19 0.70 16 5 C -0.09 -1.20 6.86 -83.55 -0.57 -1.78 16 6 C 0.61 10.12 7.89 -12.47 -0.10 10.02 16 7 O -0.54 -10.37 17.21 5.28 0.09 -10.28 16 8 N -0.60 -9.74 3.30 -171.05 -0.56 -10.31 16 9 C 0.09 1.26 6.69 -2.05 -0.01 1.24 16 10 C -0.12 -1.62 6.15 -25.05 -0.15 -1.77 16 11 C -0.09 -1.40 0.62 -154.04 -0.09 -1.49 16 12 C 0.13 2.26 5.62 -3.14 -0.02 2.24 16 13 C -0.09 -1.46 4.43 -26.92 -0.12 -1.58 16 14 C -0.14 -2.50 5.86 -26.60 -0.16 -2.66 16 15 C 0.13 2.73 4.20 -3.74 -0.02 2.71 16 16 N -0.60 -14.09 2.57 -172.59 -0.44 -14.54 16 17 C -0.26 -7.12 10.04 -15.06 -0.15 -7.27 16 18 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 19 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 20 N -0.91 -28.08 13.97 55.49 0.78 -27.31 16 21 Si 0.88 22.57 24.35 -169.99 -4.14 18.43 16 22 H -0.29 -7.17 6.63 56.52 0.37 -6.80 16 23 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 24 H -0.27 -6.77 6.63 56.52 0.37 -6.40 16 25 C 0.16 3.12 4.84 -3.93 -0.02 3.10 16 26 N -0.20 -2.73 9.28 32.85 0.30 -2.42 16 27 N -0.07 -0.80 13.65 60.35 0.82 0.02 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.14 8.08 -51.93 -0.42 -0.28 16 33 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.36 5.39 -51.93 -0.28 1.08 16 36 H 0.07 0.85 7.84 -51.92 -0.41 0.45 16 37 H 0.08 0.96 7.79 -51.93 -0.40 0.56 16 38 H 0.08 1.75 7.63 -51.93 -0.40 1.35 16 39 H 0.08 1.44 6.34 -51.93 -0.33 1.11 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.28 6.58 -51.93 -0.34 0.94 16 44 H 0.07 1.71 4.47 -51.93 -0.23 1.48 16 45 H 0.02 0.52 7.10 -51.93 -0.37 0.15 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.06 1.25 7.91 -51.93 -0.41 0.83 16 48 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -34.77 372.24 -6.54 -41.31 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.43 Total: -1.42 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.35 Total: 4.24 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.67 Total: -57.90 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.14 Total: 18.43 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.77 -6.54 -41.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040469980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.635 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds