Wall clock time and date at job start Tue Mar 31 2020 17:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46507 * 109.46807 * 2 1 4 4 C 1.34814 * 126.58978 * 125.00462 * 3 2 1 5 5 C 1.36595 * 106.83663 * 179.97438 * 4 3 2 6 6 C 1.47527 * 125.77193 * 179.97438 * 5 4 3 7 7 O 1.21592 * 119.99645 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00276 * 179.97438 * 6 5 4 9 9 C 1.48160 * 127.02528 * 0.05065 * 8 6 5 10 10 C 1.55038 * 103.31768 * 140.94081 * 9 8 6 11 11 C 1.54156 * 102.73105 * 36.98805 * 10 9 8 12 12 C 1.47608 * 127.02727 * 180.02562 * 8 6 5 13 13 C 1.52495 * 110.05757 * 219.39136 * 11 10 9 14 14 C 1.53125 * 109.58272 * 178.27389 * 13 11 10 15 15 C 1.53123 * 109.32521 * 60.52172 * 14 13 11 16 16 N 1.46939 * 108.87946 * 304.91789 * 15 14 13 17 17 C 1.36928 * 120.68390 * 234.04008 * 16 15 14 18 18 H 1.08008 * 120.00279 * 152.57839 * 17 16 15 19 19 C 1.38810 * 120.00031 * 332.58459 * 17 16 15 20 20 N 1.31626 * 120.00117 * 159.33665 * 19 17 16 21 21 Si 1.86798 * 120.00223 * 339.33406 * 19 17 16 22 22 H 1.48497 * 109.47502 * 93.10434 * 21 19 17 23 23 H 1.48500 * 109.47414 * 213.10961 * 21 19 17 24 24 H 1.48506 * 109.47078 * 333.10546 * 21 19 17 25 25 C 1.47040 * 118.63460 * 54.01831 * 16 15 14 26 26 N 1.34396 * 108.46063 * 0.24266 * 5 4 3 27 27 N 1.28765 * 109.52088 * 359.58430 * 26 5 4 28 28 H 1.08998 * 109.46762 * 300.00125 * 1 2 3 29 29 H 1.08995 * 109.47134 * 59.99707 * 1 2 3 30 30 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47133 * 240.00510 * 2 1 3 32 32 H 1.09000 * 109.47110 * 119.99789 * 2 1 3 33 33 H 1.08000 * 126.58164 * 359.97438 * 4 3 2 34 34 H 1.09001 * 110.65107 * 259.39959 * 9 8 6 35 35 H 1.09003 * 110.65189 * 22.31726 * 9 8 6 36 36 H 1.09008 * 110.76032 * 278.68348 * 10 9 8 37 37 H 1.08992 * 110.76036 * 155.30402 * 10 9 8 38 38 H 1.08999 * 109.96908 * 86.03840 * 12 8 6 39 39 H 1.08999 * 110.00418 * 324.78177 * 12 8 6 40 40 H 1.08998 * 109.45248 * 298.29830 * 13 11 10 41 41 H 1.09003 * 109.44832 * 58.24509 * 13 11 10 42 42 H 1.08997 * 109.50397 * 180.44327 * 14 13 11 43 43 H 1.08999 * 109.50047 * 300.54922 * 14 13 11 44 44 H 1.08995 * 109.57755 * 185.09919 * 15 14 13 45 45 H 1.09001 * 109.67380 * 64.79040 * 15 14 13 46 46 H 0.97006 * 119.99822 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.58477 * 187.41544 * 25 16 15 48 48 H 1.08998 * 109.69698 * 67.06783 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8716 1.9320 0.8866 5 6 3.0508 3.2322 0.5082 6 6 3.9076 4.2193 1.1924 7 8 4.5312 3.8981 2.1855 8 7 3.9998 5.4767 0.7160 9 6 3.3135 6.0327 -0.4735 10 6 2.9237 7.4644 -0.0243 11 6 4.1289 7.8900 0.8375 12 6 4.8047 6.5815 1.2731 13 6 3.6502 8.6713 2.0565 14 6 4.8516 9.0513 2.9267 15 6 5.8083 9.9286 2.1145 16 7 6.1705 9.2198 0.8793 17 6 7.4839 9.0182 0.5489 18 1 7.7637 8.1715 -0.0605 19 6 8.4560 9.9019 0.9973 20 7 9.7162 9.5250 1.0454 21 14 7.9757 11.6259 1.5325 22 1 7.7341 11.6402 2.9976 23 1 9.0730 12.5704 1.2025 24 1 6.7379 12.0377 0.8227 25 6 5.0935 8.7312 0.0056 26 7 2.3102 3.4619 -0.5895 27 7 1.6886 2.3844 -0.9224 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3262 1.4397 1.7336 34 1 3.9912 6.0685 -1.3265 35 1 2.4259 5.4474 -0.7138 36 1 2.0103 7.4475 0.5704 37 1 2.8129 8.1229 -0.8857 38 1 5.8201 6.5376 0.8794 39 1 4.8242 6.5168 2.3610 40 1 3.1383 9.5763 1.7295 41 1 2.9630 8.0548 2.6359 42 1 4.5073 9.6028 3.8015 43 1 5.3696 8.1472 3.2466 44 1 6.7070 10.1267 2.6985 45 1 5.3200 10.8706 1.8650 46 1 10.3956 10.1427 1.3584 47 1 5.5180 8.1199 -0.7907 48 1 4.5600 9.5770 -0.4281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040469980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:19 Heat of formation + Delta-G solvation = 73.893274 kcal Electronic energy + Delta-G solvation = -29536.537927 eV Core-core repulsion = 25628.725770 eV Total energy + Delta-G solvation = -3907.812157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.26658 -41.39570 -39.68519 -37.49806 -36.36481 -34.84035 -33.05298 -32.61394 -32.34313 -31.28528 -30.15408 -27.67578 -27.11637 -25.54788 -25.02003 -23.86492 -23.52017 -22.72940 -22.28988 -20.70533 -19.63683 -18.72881 -18.52411 -17.53251 -17.28720 -17.22472 -16.90418 -16.57851 -15.83253 -15.71809 -15.45847 -15.30530 -15.17050 -14.99452 -14.68204 -14.47524 -14.02638 -13.85231 -13.82719 -13.48473 -13.41997 -13.30971 -13.26673 -12.97259 -12.79052 -12.53644 -12.52416 -12.37625 -12.09240 -12.05122 -11.67338 -11.61802 -11.51011 -11.32792 -11.25753 -11.14850 -11.03953 -10.61024 -10.40562 -9.71087 -8.88380 -8.13624 -5.44779 0.13234 0.58022 1.10482 1.32430 1.42787 1.52703 1.90270 2.17785 2.44626 3.04972 3.10245 3.33797 3.37302 3.62851 3.76401 3.79154 3.83352 3.94485 4.00530 4.19003 4.25211 4.28354 4.29575 4.35836 4.42994 4.46808 4.53654 4.62419 4.75687 4.76421 4.81170 4.83191 4.91620 5.01222 5.02489 5.05640 5.10356 5.13032 5.21175 5.23564 5.25769 5.35013 5.47277 5.49391 5.54085 5.89105 6.15256 6.46788 6.79472 6.94876 7.05738 7.65910 8.06154 9.06575 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.002710 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.903078 B =10331.205608 C =10617.383976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.347 5.347 4 C 0.110 3.890 5 C -0.120 4.120 6 C 0.611 3.389 7 O -0.580 6.580 8 N -0.607 5.607 9 C 0.093 3.907 10 C -0.111 4.111 11 C -0.079 4.079 12 C 0.135 3.865 13 C -0.088 4.088 14 C -0.134 4.134 15 C 0.119 3.881 16 N -0.618 5.618 17 C -0.240 4.240 18 H 0.045 0.955 19 C -0.040 4.040 20 N -0.961 5.961 21 Si 0.952 3.048 22 H -0.278 1.278 23 H -0.314 1.314 24 H -0.255 1.255 25 C 0.162 3.838 26 N -0.219 5.219 27 N -0.083 5.083 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.234 0.766 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.039 0.961 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.260 0.740 47 H 0.050 0.950 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.459 -17.564 -0.956 30.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.132 5.132 4 C -0.048 4.048 5 C -0.259 4.259 6 C 0.399 3.601 7 O -0.460 6.460 8 N -0.338 5.338 9 C -0.029 4.029 10 C -0.149 4.149 11 C -0.081 4.081 12 C 0.012 3.988 13 C -0.125 4.125 14 C -0.173 4.173 15 C -0.005 4.005 16 N -0.342 5.342 17 C -0.370 4.370 18 H 0.063 0.937 19 C -0.234 4.234 20 N -0.608 5.608 21 Si 0.781 3.219 22 H -0.205 1.205 23 H -0.244 1.244 24 H -0.179 1.179 25 C 0.037 3.963 26 N -0.093 5.093 27 N -0.064 5.064 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.158 0.842 33 H 0.251 0.749 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.841 -17.514 -1.666 30.440 hybrid contribution 1.627 0.512 1.080 2.019 sum -23.214 -17.002 -0.586 28.780 Atomic orbital electron populations 1.22079 0.92411 1.04989 1.02722 1.22599 0.97128 0.73870 1.07675 1.50933 1.30531 1.13272 1.18456 1.23781 0.92052 0.92858 0.96151 1.21214 1.08740 0.95745 1.00212 1.16761 0.80338 0.80370 0.82634 1.90780 1.48469 1.79112 1.27677 1.48757 1.46237 1.09225 1.29570 1.23027 0.98359 0.94919 0.86547 1.22747 0.96666 0.95093 1.00403 1.21507 0.95917 0.93363 0.97363 1.21889 0.93491 0.85150 0.98264 1.21371 0.96387 1.00174 0.94586 1.22001 0.96888 0.99757 0.98640 1.21400 0.97107 0.94578 0.87443 1.44470 1.01763 1.67063 1.20923 1.18777 0.82830 1.05559 1.29831 0.93699 1.25936 0.94769 1.01907 1.00819 1.69999 1.01977 1.36600 1.52203 0.85831 0.76928 0.81157 0.78016 1.20456 1.24360 1.17911 1.21090 0.88076 0.95683 0.91477 1.74551 1.05467 1.18727 1.10538 1.81864 1.20946 0.90763 1.12804 0.92546 0.92467 0.87243 0.86775 0.84206 0.74933 0.91439 0.86699 0.89199 0.87664 0.94229 0.92253 0.89875 0.91025 0.89955 0.93699 0.93895 0.94219 0.93132 0.93152 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 10.12 71.98 0.73 -0.02 16 2 C 0.11 0.47 7.26 86.38 0.63 1.10 16 3 N -0.35 -5.17 3.69 -347.07 -1.28 -6.46 16 4 C 0.11 1.95 11.27 83.85 0.95 2.90 16 5 C -0.12 -3.14 6.86 40.82 0.28 -2.86 16 6 C 0.61 20.40 7.89 86.69 0.68 21.08 16 7 O -0.58 -22.77 17.21 -4.01 -0.07 -22.83 16 8 N -0.61 -19.85 3.30 -813.35 -2.68 -22.53 16 9 C 0.09 2.46 6.69 86.76 0.58 3.04 16 10 C -0.11 -2.55 6.15 31.68 0.19 -2.36 16 11 C -0.08 -2.43 0.62 -51.88 -0.03 -2.46 16 12 C 0.13 4.96 5.62 86.36 0.49 5.44 16 13 C -0.09 -2.45 4.43 30.47 0.14 -2.32 16 14 C -0.13 -4.56 5.86 30.68 0.18 -4.38 16 15 C 0.12 5.04 4.20 86.34 0.36 5.40 16 16 N -0.62 -28.98 2.57 -699.95 -1.80 -30.78 16 17 C -0.24 -13.90 10.04 84.03 0.84 -13.05 16 18 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 19 C -0.04 -2.41 5.23 84.86 0.44 -1.96 16 20 N -0.96 -62.35 13.97 21.65 0.30 -62.04 16 21 Si 0.95 47.52 24.35 68.60 1.67 49.19 16 22 H -0.28 -13.20 6.63 99.48 0.66 -12.54 16 23 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 24 H -0.26 -11.92 6.63 99.48 0.66 -11.26 16 25 C 0.16 6.03 4.84 86.16 0.42 6.45 16 26 N -0.22 -5.69 9.28 -50.00 -0.46 -6.16 16 27 N -0.08 -1.86 13.65 37.02 0.51 -1.35 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.14 -0.27 8.08 -2.39 -0.02 -0.29 16 33 H 0.23 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.12 2.85 5.39 -2.39 -0.01 2.84 16 36 H 0.09 1.80 7.84 -2.38 -0.02 1.78 16 37 H 0.10 2.02 7.79 -2.39 -0.02 2.00 16 38 H 0.04 1.78 7.63 -2.39 -0.02 1.76 16 39 H 0.06 2.35 6.34 -2.39 -0.02 2.33 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.04 1.72 6.58 -2.39 -0.02 1.70 16 44 H 0.04 2.05 4.47 -2.39 -0.01 2.04 16 45 H 0.04 1.57 7.10 -2.39 -0.02 1.55 16 46 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 47 H 0.05 1.99 7.91 -2.39 -0.02 1.97 16 48 H 0.05 1.67 8.09 -2.39 -0.02 1.65 16 Total: -1.00 -81.15 372.24 3.93 -77.22 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.87 Total: 9.74 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 6.88 Total: 16.00 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -5.42 Total: -129.33 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.07 Total: -22.83 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.67 Total: 49.19 kcal Total: -81.15 3.93 -77.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040469980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.117 kcal (2) G-P(sol) polarization free energy of solvation -81.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds