Wall clock time and date at job start Tue Mar 31 2020 17:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47159 * 2 1 4 4 N 1.28715 * 126.03879 * 265.91014 * 3 2 1 5 5 N 1.28514 * 110.64057 * 180.02562 * 4 3 2 6 6 C 1.33326 * 109.43696 * 359.72157 * 5 4 3 7 7 C 1.50697 * 126.81188 * 180.28392 * 6 5 4 8 8 C 1.37004 * 106.37009 * 0.43591 * 6 5 4 9 9 C 1.47235 * 127.18790 * 179.85074 * 8 6 5 10 10 O 1.21615 * 120.00271 * 85.59301 * 9 8 6 11 11 N 1.34770 * 119.99633 * 265.59915 * 9 8 6 12 12 C 1.45234 * 119.34129 * 5.51387 * 11 9 8 13 13 C 1.50615 * 112.83274 * 135.99759 * 12 11 9 14 14 C 1.48857 * 117.90716 * 27.69263 * 13 12 11 15 15 H 1.09006 * 106.76002 * 217.69079 * 14 13 12 16 16 C 1.55062 * 111.54848 * 101.51029 * 14 13 12 17 17 C 1.55062 * 101.27331 * 194.53325 * 16 14 13 18 18 N 1.47557 * 104.85015 * 35.96580 * 17 16 14 19 19 C 1.36938 * 125.85422 * 156.09415 * 18 17 16 20 20 H 1.07998 * 119.99923 * 323.96019 * 19 18 17 21 21 C 1.38812 * 119.99961 * 143.96609 * 19 18 17 22 22 N 1.31616 * 120.00296 * 164.37154 * 21 19 18 23 23 Si 1.86803 * 119.99763 * 344.36437 * 21 19 18 24 24 H 1.48502 * 109.46881 * 85.35783 * 23 21 19 25 25 H 1.48497 * 109.46929 * 205.35175 * 23 21 19 26 26 H 1.48502 * 109.47464 * 325.35665 * 23 21 19 27 27 C 1.47621 * 108.28699 * 336.11400 * 18 17 16 28 28 H 1.09000 * 108.10478 * 244.72727 * 27 18 17 29 29 C 1.44679 * 119.91653 * 185.90817 * 11 9 8 30 30 H 1.09004 * 109.47114 * 184.90693 * 1 2 3 31 31 H 1.08997 * 109.46435 * 304.90457 * 1 2 3 32 32 H 1.09002 * 109.47384 * 64.90147 * 1 2 3 33 33 H 1.09003 * 109.46789 * 240.00324 * 2 1 3 34 34 H 1.08995 * 109.47200 * 120.00864 * 2 1 3 35 35 H 1.08995 * 109.47016 * 270.18069 * 7 6 5 36 36 H 1.08992 * 109.47284 * 30.18197 * 7 6 5 37 37 H 1.09005 * 109.46560 * 150.18283 * 7 6 5 38 38 H 1.08993 * 108.80778 * 15.13563 * 12 11 9 39 39 H 1.08995 * 108.81427 * 256.86388 * 12 11 9 40 40 H 1.08997 * 107.75391 * 265.54966 * 13 12 11 41 41 H 1.09001 * 107.75065 * 149.82416 * 13 12 11 42 42 H 1.09002 * 111.06934 * 76.51713 * 16 14 13 43 43 H 1.09007 * 111.06393 * 312.54324 * 16 14 13 44 44 H 1.08998 * 110.36489 * 154.80842 * 17 16 14 45 45 H 1.09002 * 110.35995 * 277.01516 * 17 16 14 46 46 H 0.96997 * 120.00198 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.26758 * 108.00176 * 29 11 9 48 48 H 1.09005 * 108.17610 * 349.65937 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3408 2.0704 -1.0382 5 7 2.7313 3.2465 -0.6978 6 6 2.6678 3.3685 0.6284 7 6 3.0283 4.5850 1.4415 8 6 2.2131 2.1674 1.1054 9 6 1.9767 1.8002 2.5115 10 8 0.9138 2.0664 3.0391 11 7 2.9384 1.1691 3.2138 12 6 4.2434 0.9657 2.6098 13 6 5.3777 1.2724 3.5520 14 6 5.1342 1.1106 5.0116 15 1 5.6650 1.9215 5.5106 16 6 5.7394 -0.2130 5.5467 17 6 5.0439 -0.3277 6.9278 18 7 3.6841 0.2030 6.7118 19 6 2.5781 -0.0955 7.4620 20 1 2.4483 -1.0909 7.8603 21 6 1.6237 0.8814 7.7104 22 7 0.4327 0.5401 8.1545 23 14 2.0299 2.6806 7.4147 24 1 1.7844 3.0155 5.9889 25 1 1.1707 3.5304 8.2777 26 1 3.4574 2.9262 7.7421 27 6 3.7205 1.1104 5.5480 28 1 3.4869 2.1167 5.8956 29 6 2.6610 0.6952 4.5524 30 1 -0.3633 -1.0239 0.0879 31 1 -0.3632 0.5880 0.8428 32 1 -0.3634 0.4359 -0.9306 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 4.0832 4.5415 1.7123 36 1 2.8408 5.4835 0.8537 37 1 2.4215 4.6098 2.3467 38 1 4.3297 1.6094 1.7346 39 1 4.3242 -0.0728 2.2889 40 1 5.6843 2.3039 3.3784 41 1 6.2167 0.6311 3.2819 42 1 6.8207 -0.1327 5.6578 43 1 5.4750 -1.0527 4.9038 44 1 4.9985 -1.3697 7.2443 45 1 5.5729 0.2706 7.6697 46 1 -0.2341 1.2227 8.3285 47 1 2.5926 -0.3926 4.5418 48 1 1.7009 1.1051 4.8661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042089973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:49 Heat of formation + Delta-G solvation = 76.840666 kcal Electronic energy + Delta-G solvation = -31088.108255 eV Core-core repulsion = 27180.423906 eV Total energy + Delta-G solvation = -3907.684349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.51965 -41.73080 -39.93006 -37.15429 -36.77450 -35.07777 -33.96265 -33.47293 -32.17698 -31.22409 -30.66580 -29.02441 -26.80917 -26.29901 -25.61371 -24.15549 -23.84560 -22.37884 -22.07103 -21.47486 -19.84610 -18.88725 -18.70572 -17.97008 -17.74769 -17.54757 -17.10242 -16.49978 -16.30437 -15.74745 -15.62184 -15.30060 -15.13764 -14.96990 -14.74128 -14.54021 -14.21034 -14.09323 -13.80974 -13.68814 -13.66589 -13.60547 -13.22023 -13.13454 -13.08509 -12.84392 -12.63340 -12.61603 -12.36280 -12.29327 -12.07695 -11.91083 -11.53362 -11.48233 -11.39739 -11.20992 -11.10864 -10.76484 -10.30934 -9.87355 -8.86540 -8.28335 -5.67597 0.05127 0.67548 1.17713 1.23527 1.27214 1.27645 1.36595 1.77632 2.32067 2.92564 2.99500 3.23710 3.27128 3.45966 3.59667 3.70554 3.74277 3.76909 3.82120 4.06328 4.08992 4.13425 4.16464 4.18203 4.31634 4.48806 4.50037 4.51733 4.61151 4.64150 4.70304 4.80503 4.82987 4.84554 4.88116 4.89806 5.00680 5.06301 5.10432 5.12427 5.28229 5.28725 5.34847 5.43209 5.47991 5.80488 6.04781 6.10072 6.68967 6.76940 7.18209 7.46533 8.11476 8.91758 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.004682 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.875476 B = 5978.437379 C = 6420.082107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.255 5.255 4 N -0.067 5.067 5 N -0.285 5.285 6 C 0.024 3.976 7 C -0.075 4.075 8 C -0.062 4.062 9 C 0.590 3.410 10 O -0.561 6.561 11 N -0.576 5.576 12 C 0.104 3.896 13 C -0.111 4.111 14 C -0.087 4.087 15 H 0.070 0.930 16 C -0.108 4.108 17 C 0.115 3.885 18 N -0.618 5.618 19 C -0.233 4.233 20 H 0.057 0.943 21 C -0.008 4.008 22 N -0.946 5.946 23 Si 0.934 3.066 24 H -0.282 1.282 25 H -0.311 1.311 26 H -0.265 1.265 27 C 0.145 3.855 28 H 0.000 1.000 29 C 0.122 3.878 30 H 0.114 0.886 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.027 0.973 46 H 0.262 0.738 47 H 0.070 0.930 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.772 -0.894 -18.336 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.054 5.054 4 N -0.046 5.046 5 N -0.150 5.150 6 C -0.116 4.116 7 C -0.134 4.134 8 C -0.197 4.197 9 C 0.374 3.626 10 O -0.437 6.437 11 N -0.307 5.307 12 C -0.018 4.018 13 C -0.149 4.149 14 C -0.106 4.106 15 H 0.088 0.912 16 C -0.146 4.146 17 C -0.008 4.008 18 N -0.345 5.345 19 C -0.363 4.363 20 H 0.075 0.925 21 C -0.205 4.205 22 N -0.590 5.590 23 Si 0.765 3.235 24 H -0.209 1.209 25 H -0.239 1.239 26 H -0.190 1.190 27 C 0.039 3.961 28 H 0.018 0.982 29 C -0.002 4.002 30 H 0.133 0.867 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.168 0.832 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.147 -0.805 -19.441 22.938 hybrid contribution -1.207 0.931 1.842 2.391 sum 10.939 0.126 -17.599 20.722 Atomic orbital electron populations 1.22182 0.92599 1.05374 1.02551 1.22673 0.96847 0.74508 1.08130 1.48100 1.40641 1.14061 1.02604 1.78087 1.14955 0.99805 1.11722 1.74808 1.18440 1.09874 1.11868 1.22482 1.02140 0.95824 0.91131 1.20296 1.03460 0.92260 0.97373 1.21470 1.13718 0.95038 0.89449 1.17190 0.83732 0.77516 0.84119 1.90879 1.27599 1.54100 1.71144 1.47112 1.13316 1.55142 1.15098 1.21185 0.80663 1.03427 0.96478 1.20423 0.98461 1.04779 0.91266 1.20472 0.92921 1.00233 0.97021 0.91153 1.22941 1.00478 0.96287 0.94865 1.22005 0.84296 0.97476 0.97053 1.45046 1.05529 1.54565 1.29311 1.18410 0.97038 0.94606 1.26204 0.92520 1.25844 0.96020 1.00544 0.98098 1.69864 1.04585 1.34206 1.50375 0.86079 0.77463 0.83225 0.76715 1.20944 1.23939 1.18994 1.20428 0.95293 0.92719 0.87676 0.98217 1.20906 0.99592 0.99030 0.80698 0.86705 0.94562 0.90859 0.83215 0.87178 0.87713 0.88249 0.92111 0.89320 0.89418 0.90415 0.86346 0.87336 0.90153 0.93335 0.95477 0.92895 0.91213 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 10.24 71.98 0.74 -2.24 16 2 C 0.10 1.58 6.90 86.38 0.60 2.18 16 3 N -0.26 -6.11 3.39 -335.44 -1.14 -7.25 16 4 N -0.07 -1.75 13.14 37.02 0.49 -1.26 16 5 N -0.29 -8.01 12.35 -47.88 -0.59 -8.60 16 6 C 0.02 0.66 7.00 42.04 0.29 0.96 16 7 C -0.08 -1.67 10.28 71.23 0.73 -0.94 16 8 C -0.06 -1.77 4.73 40.41 0.19 -1.58 16 9 C 0.59 20.50 6.82 86.61 0.59 21.09 16 10 O -0.56 -25.52 16.39 -4.08 -0.07 -25.59 16 11 N -0.58 -18.12 3.03 -841.65 -2.55 -20.67 16 12 C 0.10 2.13 6.18 85.84 0.53 2.66 16 13 C -0.11 -2.00 5.55 28.51 0.16 -1.84 16 14 C -0.09 -2.32 2.63 -11.99 -0.03 -2.35 16 15 H 0.07 1.85 8.10 -2.38 -0.02 1.83 16 16 C -0.11 -2.50 6.24 32.01 0.20 -2.30 16 17 C 0.12 3.99 7.26 86.88 0.63 4.62 16 18 N -0.62 -27.97 2.71 -675.16 -1.83 -29.80 16 19 C -0.23 -13.07 10.03 84.03 0.84 -12.23 16 20 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 21 C -0.01 -0.47 5.20 84.86 0.44 -0.03 16 22 N -0.95 -60.26 13.97 21.65 0.30 -59.96 16 23 Si 0.93 49.41 23.75 68.60 1.63 51.04 16 24 H -0.28 -15.17 6.44 99.48 0.64 -14.53 16 25 H -0.31 -16.70 7.11 99.48 0.71 -16.00 16 26 H -0.26 -13.26 7.04 99.48 0.70 -12.56 16 27 C 0.15 5.77 2.26 43.61 0.10 5.86 16 28 H 0.00 0.02 3.58 -2.39 -0.01 0.01 16 29 C 0.12 4.97 5.25 86.13 0.45 5.42 16 30 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 1.69 7.99 -2.39 -0.02 1.67 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.06 1.57 8.02 -2.38 -0.02 1.56 16 38 H 0.09 1.66 6.11 -2.39 -0.01 1.65 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.22 8.13 -2.39 -0.02 1.20 16 41 H 0.12 1.30 7.65 -2.39 -0.02 1.28 16 42 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 47 H 0.07 2.87 8.07 -2.39 -0.02 2.85 16 48 H 0.05 2.39 5.27 -2.38 -0.01 2.38 16 Total: -1.00 -80.39 374.75 3.60 -76.80 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.89 Total: 6.00 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 6.47 Total: 19.29 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -5.32 Total: -127.54 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.07 Total: -25.59 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.63 Total: 51.04 kcal Total: -80.39 3.60 -76.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042089973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.636 kcal (2) G-P(sol) polarization free energy of solvation -80.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds