Wall clock time and date at job start Tue Mar 31 2020 18:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47517 * 2 1 4 4 N 1.28526 * 124.44182 * 269.97555 * 3 2 1 5 5 C 1.31130 * 109.05603 * 179.73104 * 4 3 2 6 6 C 1.50705 * 127.10825 * 180.29028 * 5 4 3 7 7 C 1.40920 * 105.77857 * 0.43617 * 5 4 3 8 8 C 1.47801 * 127.23545 * 179.83754 * 7 5 4 9 9 O 1.21553 * 120.00370 * 6.00932 * 8 7 5 10 10 N 1.34779 * 119.99603 * 186.00254 * 8 7 5 11 11 C 1.46606 * 119.75244 * 176.07869 * 10 8 7 12 12 C 1.53883 * 110.71283 * 227.74910 * 11 10 8 13 13 C 1.51980 * 107.29192 * 308.18630 * 12 11 10 14 14 H 1.09003 * 111.57378 * 303.14499 * 13 12 11 15 15 C 1.53703 * 115.00122 * 175.42969 * 13 12 11 16 16 C 1.55292 * 101.81703 * 206.54746 * 15 13 12 17 17 N 1.48157 * 107.04548 * 22.44805 * 16 15 13 18 18 C 1.36934 * 126.39994 * 185.03894 * 17 16 15 19 19 H 1.07994 * 120.00091 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00123 * 359.95327 * 18 17 16 21 21 N 1.31624 * 119.99701 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00131 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47415 * 89.99826 * 22 20 18 24 24 H 1.48502 * 109.46939 * 210.00188 * 22 20 18 25 25 H 1.48499 * 109.47231 * 329.99934 * 22 20 18 26 26 C 1.45507 * 107.19966 * 4.99679 * 17 16 15 27 27 H 1.08999 * 109.56217 * 85.85133 * 26 17 16 28 28 C 1.47791 * 119.75758 * 356.08212 * 10 8 7 29 29 N 1.28584 * 124.44798 * 89.99597 * 3 2 1 30 30 H 1.09003 * 109.46914 * 300.00266 * 1 2 3 31 31 H 1.09001 * 109.47197 * 60.00296 * 1 2 3 32 32 H 1.08996 * 109.47374 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47338 * 239.99409 * 2 1 3 34 34 H 1.09005 * 109.46824 * 120.00035 * 2 1 3 35 35 H 1.09005 * 109.47104 * 270.16799 * 6 5 4 36 36 H 1.08993 * 109.47456 * 30.17232 * 6 5 4 37 37 H 1.09005 * 109.46961 * 150.17524 * 6 5 4 38 38 H 1.08997 * 109.22568 * 107.42681 * 11 10 8 39 39 H 1.08996 * 109.22821 * 348.06464 * 11 10 8 40 40 H 1.08996 * 109.89036 * 188.74478 * 12 11 10 41 41 H 1.09004 * 109.96024 * 67.67000 * 12 11 10 42 42 H 1.09002 * 110.95820 * 88.41438 * 15 13 12 43 43 H 1.09000 * 110.98969 * 324.69953 * 15 13 12 44 44 H 1.09003 * 109.92004 * 263.09679 * 16 15 13 45 45 H 1.09006 * 110.08754 * 141.88625 * 16 15 13 46 46 H 0.97003 * 119.99555 * 179.97438 * 21 20 18 47 47 H 1.08996 * 110.06663 * 9.52146 * 28 10 8 48 48 H 1.09004 * 110.06544 * 247.95544 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2611 2.0663 -1.0600 5 6 2.6770 3.2602 -0.7121 6 6 3.0682 4.3900 -1.6296 7 6 2.6859 3.2674 0.6971 8 6 3.0804 4.3825 1.5833 9 8 3.3427 5.4711 1.1105 10 7 3.1491 4.1923 2.9158 11 6 3.6236 5.2759 3.7819 12 6 4.6766 4.7562 4.7765 13 6 4.0816 3.5423 5.4711 14 1 3.1384 3.7834 5.9613 15 6 5.0338 2.8119 6.4314 16 6 4.4619 1.3682 6.4093 17 7 3.6972 1.2233 5.1486 18 6 2.9487 0.1402 4.7722 19 1 2.4304 0.1449 3.8248 20 6 2.8564 -0.9641 5.6082 21 7 3.4881 -0.9699 6.7630 22 14 1.8360 -2.4419 5.0944 23 1 2.6895 -3.3950 4.3406 24 1 1.2929 -3.1127 6.3029 25 1 0.7141 -1.9928 4.2313 26 6 3.8894 2.4473 4.3857 27 1 4.8034 2.3705 3.7967 28 6 2.7456 2.8930 3.4931 29 7 2.2608 2.0669 1.0604 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 4.1326 4.3230 -1.8551 36 1 2.4958 4.3216 -2.5547 37 1 2.8592 5.3425 -1.1426 38 1 2.7801 5.6887 4.3351 39 1 4.0666 6.0592 3.1669 40 1 4.9060 5.5282 5.5108 41 1 5.5834 4.4708 4.2430 42 1 4.9792 3.2376 7.4334 43 1 6.0572 2.8317 6.0568 44 1 3.8018 1.2172 7.2635 45 1 5.2752 0.6429 6.4358 46 1 3.4233 -1.7414 7.3474 47 1 2.5854 2.1643 2.6985 48 1 1.8361 3.0118 4.0821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042383928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:25 Heat of formation + Delta-G solvation = 116.180555 kcal Electronic energy + Delta-G solvation = -30624.504427 eV Core-core repulsion = 26718.525984 eV Total energy + Delta-G solvation = -3905.978443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.61824 -39.98820 -38.19364 -35.29416 -35.03773 -33.48302 -32.60262 -31.61881 -30.99726 -29.29354 -28.46444 -27.92907 -25.59027 -24.42706 -23.58116 -22.67964 -21.82421 -21.06644 -20.17025 -19.78787 -19.12619 -17.29825 -16.77863 -16.66223 -16.56082 -15.60310 -14.95284 -14.81581 -14.59705 -14.34401 -14.05223 -13.97236 -13.61383 -13.37397 -13.26464 -13.17205 -12.73376 -12.64832 -12.53127 -12.24442 -12.08052 -11.90625 -11.60733 -11.55976 -11.42584 -11.29570 -10.94304 -10.90678 -10.76639 -10.60436 -10.23851 -10.14478 -10.01833 -9.86723 -9.76459 -9.62869 -9.17629 -9.14371 -8.64946 -8.37496 -6.86133 -5.73795 -3.06789 1.41448 1.98155 2.14900 3.12878 3.33796 3.36770 3.39576 3.41638 3.92675 4.44104 4.60015 4.69727 4.78839 4.84152 5.01805 5.05380 5.20150 5.23809 5.39158 5.42991 5.47171 5.52060 5.62747 5.65531 5.70201 5.72730 5.82864 5.83625 5.86304 5.95572 5.96853 6.09446 6.14825 6.18654 6.22432 6.26917 6.40487 6.52393 6.60692 6.68964 6.74592 7.08230 7.09002 7.50210 7.58520 7.60603 7.79662 8.15973 8.22692 8.35653 9.17008 9.80334 10.48980 11.38798 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.005797 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.333602 B = 4828.820249 C = 7541.584003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.140 5.140 4 N -0.294 5.294 5 C 0.056 3.944 6 C -0.066 4.066 7 C -0.046 4.046 8 C 0.607 3.393 9 O -0.542 6.542 10 N -0.589 5.589 11 C 0.114 3.886 12 C -0.118 4.118 13 C -0.115 4.115 14 H 0.077 0.923 15 C -0.138 4.138 16 C 0.177 3.823 17 N -0.591 5.591 18 C -0.222 4.222 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.159 3.841 27 H 0.021 0.979 28 C 0.078 3.922 29 N -0.231 5.231 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.037 0.963 46 H 0.252 0.748 47 H 0.137 0.863 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 7.749 -11.073 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 N -0.042 5.042 4 N -0.135 5.135 5 C -0.108 4.108 6 C -0.125 4.125 7 C -0.208 4.208 8 C 0.392 3.608 9 O -0.418 6.418 10 N -0.321 5.321 11 C -0.008 4.008 12 C -0.157 4.157 13 C -0.135 4.135 14 H 0.095 0.905 15 C -0.176 4.176 16 C 0.053 3.947 17 N -0.316 5.316 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.050 3.950 27 H 0.038 0.962 28 C -0.046 4.046 29 N -0.078 5.078 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.153 0.847 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.542 6.787 -11.213 13.351 hybrid contribution -0.244 -0.349 0.083 0.434 sum -2.786 6.438 -11.130 13.157 Atomic orbital electron populations 1.22176 0.92901 1.04109 1.03631 1.22178 0.96263 0.74094 1.06517 1.48389 1.42992 1.13465 0.99306 1.73882 1.18876 1.05047 1.15686 1.23175 1.01297 0.93820 0.92513 1.20201 1.01752 0.93825 0.96714 1.22935 1.09981 0.93662 0.94201 1.16772 0.77342 0.85327 0.81331 1.90715 1.51555 1.24449 1.75127 1.48124 1.63058 1.15668 1.05233 1.21608 0.97470 0.89118 0.92586 1.21795 0.98031 0.98239 0.97596 1.22307 0.99328 0.94521 0.97332 0.90506 1.22724 0.97972 0.98897 0.98044 1.21540 0.94555 0.89514 0.89107 1.44155 1.56913 1.12691 1.17844 1.19003 1.21934 0.92139 1.01954 0.90336 1.24777 1.00579 0.98292 0.96775 1.69943 1.46323 1.29967 1.10611 0.86213 0.79713 0.83031 0.77399 1.21713 1.21706 1.20639 1.20951 0.94878 0.87290 0.91928 0.96164 1.22837 0.97915 0.83384 1.00424 1.74335 1.15019 1.04204 1.14248 0.91056 0.91598 0.89401 0.87204 0.86426 0.90348 0.90891 0.88611 0.91755 0.89304 0.90819 0.91492 0.92272 0.92619 0.92673 0.94467 0.93797 0.84661 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.24 37.16 0.38 -1.25 16 2 C 0.13 1.42 7.24 -4.05 -0.03 1.40 16 3 N -0.14 -2.07 3.94 -10.62 -0.04 -2.12 16 4 N -0.29 -4.38 12.01 33.92 0.41 -3.98 16 5 C 0.06 0.84 7.39 -81.88 -0.61 0.23 16 6 C -0.07 -0.78 10.06 36.01 0.36 -0.42 16 7 C -0.05 -0.77 6.93 -82.68 -0.57 -1.35 16 8 C 0.61 10.53 7.68 -12.35 -0.09 10.43 16 9 O -0.54 -9.67 14.53 5.32 0.08 -9.59 16 10 N -0.59 -9.96 3.01 -173.87 -0.52 -10.48 16 11 C 0.11 1.66 6.32 -3.52 -0.02 1.64 16 12 C -0.12 -1.69 5.72 -26.79 -0.15 -1.84 16 13 C -0.12 -2.01 2.61 -89.51 -0.23 -2.25 16 14 H 0.08 1.39 8.13 -51.93 -0.42 0.96 16 15 C -0.14 -2.55 6.54 -25.15 -0.16 -2.71 16 16 C 0.18 4.21 5.45 -1.92 -0.01 4.20 16 17 N -0.59 -14.53 3.35 -162.91 -0.55 -15.07 16 18 C -0.22 -5.85 9.88 -15.06 -0.15 -6.00 16 19 H 0.08 1.98 7.41 -52.49 -0.39 1.59 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.31 10.43 55.49 0.58 -25.73 16 22 Si 0.91 21.04 29.55 -169.99 -5.02 16.02 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.16 3.26 2.77 -67.82 -0.19 3.07 16 27 H 0.02 0.46 7.90 -51.93 -0.41 0.05 16 28 C 0.08 1.46 5.54 -3.95 -0.02 1.44 16 29 N -0.23 -3.93 8.44 33.42 0.28 -3.65 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.18 6.68 -51.93 -0.35 0.83 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.25 6.99 -51.93 -0.36 0.89 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.99 7.97 -51.93 -0.41 0.58 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 44 H 0.06 1.45 7.21 -51.93 -0.37 1.07 16 45 H 0.04 0.98 7.76 -51.93 -0.40 0.57 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.14 2.66 3.50 -115.77 -0.40 2.25 16 48 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -31.46 375.98 -8.46 -39.91 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.73 Total: 2.74 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.60 Total: 6.28 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.16 Total: -61.03 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.46 -8.46 -39.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042383928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.091 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds