Wall clock time and date at job start Tue Mar 31 2020 18:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47517 * 2 1 4 4 N 1.28526 * 124.44182 * 269.97555 * 3 2 1 5 5 C 1.31130 * 109.05603 * 179.73104 * 4 3 2 6 6 C 1.50705 * 127.10825 * 180.29028 * 5 4 3 7 7 C 1.40920 * 105.77857 * 0.43617 * 5 4 3 8 8 C 1.47801 * 127.23545 * 179.83754 * 7 5 4 9 9 O 1.21553 * 120.00370 * 6.00932 * 8 7 5 10 10 N 1.34779 * 119.99603 * 186.00254 * 8 7 5 11 11 C 1.46606 * 119.75244 * 176.07869 * 10 8 7 12 12 C 1.53883 * 110.71283 * 227.74910 * 11 10 8 13 13 C 1.51980 * 107.29192 * 308.18630 * 12 11 10 14 14 H 1.09003 * 111.57378 * 303.14499 * 13 12 11 15 15 C 1.53703 * 115.00122 * 175.42969 * 13 12 11 16 16 C 1.55292 * 101.81703 * 206.54746 * 15 13 12 17 17 N 1.48157 * 107.04548 * 22.44805 * 16 15 13 18 18 C 1.36934 * 126.39994 * 185.03894 * 17 16 15 19 19 H 1.07994 * 120.00091 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00123 * 359.95327 * 18 17 16 21 21 N 1.31624 * 119.99701 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00131 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47415 * 89.99826 * 22 20 18 24 24 H 1.48502 * 109.46939 * 210.00188 * 22 20 18 25 25 H 1.48499 * 109.47231 * 329.99934 * 22 20 18 26 26 C 1.45507 * 107.19966 * 4.99679 * 17 16 15 27 27 H 1.08999 * 109.56217 * 85.85133 * 26 17 16 28 28 C 1.47791 * 119.75758 * 356.08212 * 10 8 7 29 29 N 1.28584 * 124.44798 * 89.99597 * 3 2 1 30 30 H 1.09003 * 109.46914 * 300.00266 * 1 2 3 31 31 H 1.09001 * 109.47197 * 60.00296 * 1 2 3 32 32 H 1.08996 * 109.47374 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47338 * 239.99409 * 2 1 3 34 34 H 1.09005 * 109.46824 * 120.00035 * 2 1 3 35 35 H 1.09005 * 109.47104 * 270.16799 * 6 5 4 36 36 H 1.08993 * 109.47456 * 30.17232 * 6 5 4 37 37 H 1.09005 * 109.46961 * 150.17524 * 6 5 4 38 38 H 1.08997 * 109.22568 * 107.42681 * 11 10 8 39 39 H 1.08996 * 109.22821 * 348.06464 * 11 10 8 40 40 H 1.08996 * 109.89036 * 188.74478 * 12 11 10 41 41 H 1.09004 * 109.96024 * 67.67000 * 12 11 10 42 42 H 1.09002 * 110.95820 * 88.41438 * 15 13 12 43 43 H 1.09000 * 110.98969 * 324.69953 * 15 13 12 44 44 H 1.09003 * 109.92004 * 263.09679 * 16 15 13 45 45 H 1.09006 * 110.08754 * 141.88625 * 16 15 13 46 46 H 0.97003 * 119.99555 * 179.97438 * 21 20 18 47 47 H 1.08996 * 110.06663 * 9.52146 * 28 10 8 48 48 H 1.09004 * 110.06544 * 247.95544 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2611 2.0663 -1.0600 5 6 2.6770 3.2602 -0.7121 6 6 3.0682 4.3900 -1.6296 7 6 2.6859 3.2674 0.6971 8 6 3.0804 4.3825 1.5833 9 8 3.3427 5.4711 1.1105 10 7 3.1491 4.1923 2.9158 11 6 3.6236 5.2759 3.7819 12 6 4.6766 4.7562 4.7765 13 6 4.0816 3.5423 5.4711 14 1 3.1384 3.7834 5.9613 15 6 5.0338 2.8119 6.4314 16 6 4.4619 1.3682 6.4093 17 7 3.6972 1.2233 5.1486 18 6 2.9487 0.1402 4.7722 19 1 2.4304 0.1449 3.8248 20 6 2.8564 -0.9641 5.6082 21 7 3.4881 -0.9699 6.7630 22 14 1.8360 -2.4419 5.0944 23 1 2.6895 -3.3950 4.3406 24 1 1.2929 -3.1127 6.3029 25 1 0.7141 -1.9928 4.2313 26 6 3.8894 2.4473 4.3857 27 1 4.8034 2.3705 3.7967 28 6 2.7456 2.8930 3.4931 29 7 2.2608 2.0669 1.0604 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 4.1326 4.3230 -1.8551 36 1 2.4958 4.3216 -2.5547 37 1 2.8592 5.3425 -1.1426 38 1 2.7801 5.6887 4.3351 39 1 4.0666 6.0592 3.1669 40 1 4.9060 5.5282 5.5108 41 1 5.5834 4.4708 4.2430 42 1 4.9792 3.2376 7.4334 43 1 6.0572 2.8317 6.0568 44 1 3.8018 1.2172 7.2635 45 1 5.2752 0.6429 6.4358 46 1 3.4233 -1.7414 7.3474 47 1 2.5854 2.1643 2.6985 48 1 1.8361 3.0118 4.0821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042383928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:24 Heat of formation + Delta-G solvation = 96.713750 kcal Electronic energy + Delta-G solvation = -30625.348571 eV Core-core repulsion = 26718.525984 eV Total energy + Delta-G solvation = -3906.822587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.78664 -41.38558 -39.69711 -36.78203 -36.08666 -34.95485 -34.05373 -32.98982 -32.25249 -30.86559 -30.11623 -28.96947 -26.93826 -26.16049 -24.97970 -23.85982 -23.06356 -22.28061 -21.68537 -21.45086 -20.47783 -18.65085 -18.33771 -18.01369 -17.77556 -16.99830 -16.69703 -16.30516 -15.80082 -15.68247 -15.49934 -15.15985 -15.09664 -14.79332 -14.49091 -14.29186 -13.93106 -13.75475 -13.74438 -13.54250 -13.44557 -13.10597 -13.07374 -13.05589 -12.71023 -12.59207 -12.49587 -12.39910 -12.23193 -12.04220 -11.91522 -11.61595 -11.50397 -11.42708 -11.33370 -11.22098 -10.70655 -10.57899 -10.30019 -9.71937 -8.87197 -7.80201 -5.15376 0.16055 0.82719 1.11504 1.46087 1.48785 1.57029 1.85313 2.09183 2.52649 2.76519 3.34885 3.39088 3.57358 3.71279 3.86372 3.87876 3.92892 3.95741 4.02732 4.18685 4.29117 4.33781 4.36220 4.43832 4.49932 4.58741 4.62985 4.64684 4.76542 4.77304 4.78205 4.88588 4.93719 4.97944 5.00192 5.09733 5.11438 5.13555 5.17676 5.35080 5.43074 5.51060 5.58531 5.67803 5.79026 5.80599 6.16674 6.23601 6.88889 7.11315 7.12411 7.80963 8.49625 9.31477 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.005797 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.333602 B = 4828.820249 C = 7541.584003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.135 5.135 4 N -0.294 5.294 5 C 0.052 3.948 6 C -0.063 4.063 7 C -0.071 4.071 8 C 0.605 3.395 9 O -0.548 6.548 10 N -0.590 5.590 11 C 0.110 3.890 12 C -0.106 4.106 13 C -0.102 4.102 14 H 0.075 0.925 15 C -0.123 4.123 16 C 0.182 3.818 17 N -0.609 5.609 18 C -0.226 4.226 19 H 0.085 0.915 20 C -0.068 4.068 21 N -0.954 5.954 22 Si 0.968 3.032 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.259 1.259 26 C 0.153 3.847 27 H 0.004 0.996 28 C 0.090 3.910 29 N -0.253 5.253 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.138 0.862 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.023 0.977 45 H 0.000 1.000 46 H 0.244 0.756 47 H 0.131 0.869 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 8.934 -12.637 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.002 4.002 3 N -0.038 5.038 4 N -0.136 5.136 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.232 4.232 8 C 0.391 3.609 9 O -0.426 6.426 10 N -0.322 5.322 11 C -0.011 4.011 12 C -0.144 4.144 13 C -0.121 4.121 14 H 0.093 0.907 15 C -0.161 4.161 16 C 0.057 3.943 17 N -0.334 5.334 18 C -0.355 4.355 19 H 0.103 0.897 20 C -0.260 4.260 21 N -0.603 5.603 22 Si 0.797 3.203 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.183 1.183 26 C 0.044 3.956 27 H 0.021 0.979 28 C -0.034 4.034 29 N -0.101 5.101 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.156 0.844 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.018 0.982 46 H 0.053 0.947 47 H 0.147 0.853 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.981 8.017 -12.809 15.402 hybrid contribution -0.096 -0.753 0.511 0.916 sum -3.077 7.263 -12.297 14.610 Atomic orbital electron populations 1.22149 0.91600 1.05554 1.02746 1.22587 0.97349 0.72665 1.07571 1.48810 1.42001 1.14209 0.98805 1.73885 1.19028 1.05093 1.15564 1.23694 1.00596 0.94540 0.92296 1.20293 1.02767 0.92215 0.96849 1.23042 1.11235 0.93781 0.95127 1.16859 0.77147 0.85420 0.81436 1.90700 1.52014 1.24680 1.75195 1.48140 1.63151 1.15385 1.05496 1.21820 0.98170 0.88537 0.92568 1.21753 0.97391 0.97422 0.97882 1.22238 0.99249 0.94793 0.95860 0.90693 1.22602 0.98372 0.95207 0.99941 1.21337 0.92761 0.92251 0.87966 1.44423 1.56618 1.13826 1.18553 1.19370 1.21338 0.92771 1.01986 0.89703 1.25603 1.02229 1.01168 0.97008 1.70175 1.48094 1.30285 1.11753 0.85215 0.78780 0.79472 0.76867 1.21442 1.22708 1.18281 1.21042 0.94731 0.86917 0.92861 0.97852 1.22540 0.96667 0.84436 0.99807 1.74222 1.15777 1.04715 1.15429 0.93064 0.91244 0.86770 0.84444 0.87086 0.89199 0.88728 0.89220 0.90181 0.88363 0.87197 0.91859 0.89814 0.91454 0.95908 0.98190 0.94684 0.85258 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.24 71.98 0.74 -2.11 16 2 C 0.12 2.41 7.24 86.38 0.63 3.04 16 3 N -0.14 -3.90 3.94 -187.50 -0.74 -4.64 16 4 N -0.29 -8.38 12.01 -46.59 -0.56 -8.94 16 5 C 0.05 1.50 7.39 43.32 0.32 1.82 16 6 C -0.06 -1.36 10.06 71.24 0.72 -0.64 16 7 C -0.07 -2.37 6.93 42.24 0.29 -2.08 16 8 C 0.61 20.48 7.68 86.77 0.67 21.15 16 9 O -0.55 -18.83 14.53 -3.88 -0.06 -18.88 16 10 N -0.59 -19.32 3.01 -822.28 -2.48 -21.80 16 11 C 0.11 2.92 6.32 86.66 0.55 3.47 16 12 C -0.11 -2.72 5.72 30.56 0.17 -2.54 16 13 C -0.10 -3.41 2.61 -10.08 -0.03 -3.43 16 14 H 0.07 2.58 8.13 -2.39 -0.02 2.56 16 15 C -0.12 -4.42 6.54 31.62 0.21 -4.21 16 16 C 0.18 8.92 5.45 86.85 0.47 9.39 16 17 N -0.61 -30.70 3.35 -669.32 -2.24 -32.94 16 18 C -0.23 -12.17 9.88 84.03 0.83 -11.34 16 19 H 0.09 4.34 7.41 -2.91 -0.02 4.32 16 20 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 21 N -0.95 -56.69 10.43 21.65 0.23 -56.47 16 22 Si 0.97 43.84 29.55 68.60 2.03 45.86 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 C 0.15 6.28 2.77 45.59 0.13 6.40 16 27 H 0.00 0.18 7.90 -2.39 -0.02 0.16 16 28 C 0.09 3.36 5.54 85.73 0.48 3.84 16 29 N -0.25 -8.58 8.44 -48.17 -0.41 -8.99 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.09 2.07 6.68 -2.38 -0.02 2.06 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 2.48 6.99 -2.39 -0.02 2.47 16 40 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 1.71 7.97 -2.39 -0.02 1.69 16 42 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 44 H 0.02 1.25 7.21 -2.39 -0.02 1.23 16 45 H 0.00 -0.01 7.76 -2.38 -0.02 -0.03 16 46 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 47 H 0.13 5.13 3.50 -84.98 -0.30 4.83 16 48 H 0.06 2.33 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -70.39 375.98 3.08 -67.31 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.67 Total: 20.00 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 6.63 Total: 19.47 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -6.20 Total: -133.77 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.06 Total: -18.88 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -70.39 3.08 -67.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042383928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.026 kcal (2) G-P(sol) polarization free energy of solvation -70.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds