Wall clock time and date at job start Tue Mar 31 2020 18:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28712 * 126.03738 * 2 1 4 4 N 1.28517 * 110.64077 * 179.97438 * 3 2 1 5 5 C 1.33316 * 109.43719 * 359.76331 * 4 3 2 6 6 C 1.37006 * 106.37515 * 0.37255 * 5 4 3 7 7 C 1.47229 * 127.19219 * 179.90149 * 6 5 4 8 8 O 1.21616 * 120.00279 * 197.90606 * 7 6 5 9 9 N 1.34775 * 119.99829 * 17.91300 * 7 6 5 10 10 C 1.44579 * 118.78990 * 356.49682 * 9 7 6 11 11 C 1.54691 * 109.62734 * 270.64375 * 10 9 7 12 12 C 1.47013 * 110.64259 * 288.15333 * 11 10 9 13 13 C 1.52945 * 114.30839 * 62.91191 * 12 11 10 14 14 C 1.50551 * 109.11416 * 276.10513 * 13 12 11 15 15 C 1.53941 * 111.50732 * 214.31025 * 14 13 12 16 16 C 1.54152 * 104.89426 * 98.52146 * 15 14 13 17 17 N 1.47517 * 107.06791 * 358.24169 * 16 15 14 18 18 C 1.36929 * 126.98886 * 205.32040 * 17 16 15 19 19 H 1.07995 * 120.00648 * 179.97438 * 18 17 16 20 20 C 1.38820 * 119.99794 * 359.97438 * 18 17 16 21 21 N 1.31615 * 120.00018 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99975 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47188 * 120.00119 * 22 20 18 25 25 H 1.48502 * 109.47064 * 240.00097 * 22 20 18 26 26 C 1.48219 * 106.02549 * 25.30683 * 17 16 15 27 27 C 1.47599 * 118.79080 * 176.51872 * 9 7 6 28 28 H 1.08996 * 109.47582 * 264.44389 * 1 2 3 29 29 H 1.09003 * 109.47273 * 24.44619 * 1 2 3 30 30 H 1.09000 * 109.46944 * 144.44394 * 1 2 3 31 31 H 1.07998 * 126.81114 * 180.25866 * 5 4 3 32 32 H 1.08996 * 109.44558 * 30.69124 * 10 9 7 33 33 H 1.09002 * 109.44437 * 150.59887 * 10 9 7 34 34 H 1.08996 * 109.24561 * 48.45773 * 11 10 9 35 35 H 1.09002 * 109.23532 * 167.85371 * 11 10 9 36 36 H 1.08997 * 108.51488 * 184.14692 * 12 11 10 37 37 H 1.09002 * 108.51530 * 301.80023 * 12 11 10 38 38 H 1.09002 * 109.51653 * 156.21932 * 13 12 11 39 39 H 1.09001 * 109.53640 * 36.00014 * 13 12 11 40 40 H 1.09001 * 110.35833 * 339.67209 * 15 14 13 41 41 H 1.09006 * 110.35648 * 217.37790 * 15 14 13 42 42 H 1.09007 * 109.90976 * 117.59452 * 16 15 14 43 43 H 1.08997 * 109.91853 * 238.88193 * 16 15 14 44 44 H 0.96999 * 120.00483 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.67413 * 79.85623 * 26 17 16 46 46 H 1.09001 * 110.66864 * 202.99318 * 26 17 16 47 47 H 1.09001 * 108.98815 * 17.44134 * 27 9 7 48 48 H 1.09003 * 108.98767 * 258.70344 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6996 0.0005 5 6 3.5551 -0.6302 0.0061 6 6 2.2712 -1.1082 0.0005 7 6 1.8462 -2.5178 0.0014 8 8 0.7129 -2.8115 -0.3276 9 7 2.7132 -3.4827 0.3670 10 6 4.0755 -3.1128 0.6795 11 6 4.9342 -3.1580 -0.6064 12 6 5.1644 -4.5476 -1.0274 13 6 3.8930 -5.3107 -1.4021 14 6 3.2628 -5.8629 -0.1514 15 6 2.5883 -7.2220 -0.4118 16 6 3.6133 -8.2706 0.0637 17 7 4.8068 -7.5335 0.5202 18 6 6.0938 -7.9984 0.5684 19 1 6.8867 -7.3575 0.9244 20 6 6.3795 -9.2939 0.1595 21 7 5.4134 -10.0750 -0.2750 22 14 8.1353 -9.9281 0.2245 23 1 9.0277 -8.8621 0.7467 24 1 8.2016 -11.1109 1.1198 25 1 8.5726 -10.3156 -1.1408 26 6 4.3297 -6.1870 0.9157 27 6 2.2372 -4.8783 0.4331 28 1 -0.3634 -0.0995 1.0228 29 1 -0.3634 0.9356 -0.4253 30 1 -0.3633 -0.8361 -0.5976 31 1 4.4632 -1.2148 0.0118 32 1 4.0921 -2.1040 1.0917 33 1 4.4820 -3.8103 1.4119 34 1 4.4173 -2.6223 -1.4026 35 1 5.8934 -2.6770 -0.4147 36 1 5.8314 -4.5421 -1.8895 37 1 5.6574 -5.0788 -0.2132 38 1 4.1452 -6.1300 -2.0754 39 1 3.1940 -4.6348 -1.8946 40 1 2.3844 -7.3464 -1.4754 41 1 1.6665 -7.3044 0.1640 42 1 3.1967 -8.8496 0.8880 43 1 3.8782 -8.9317 -0.7613 44 1 5.6129 -10.9804 -0.5604 45 1 3.8838 -6.2135 1.9099 46 1 5.1442 -5.4637 0.8774 47 1 1.3058 -4.9622 -0.1269 48 1 2.0480 -5.1395 1.4743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045935993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:36 Heat of formation + Delta-G solvation = 138.838822 kcal Electronic energy + Delta-G solvation = -30734.251710 eV Core-core repulsion = 26829.255803 eV Total energy + Delta-G solvation = -3904.995907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.60205 -40.76970 -38.70697 -36.52268 -34.81433 -33.70497 -33.39498 -31.76127 -30.39555 -28.84550 -28.41386 -27.39566 -25.93195 -25.11385 -24.13970 -23.03894 -22.47082 -21.36398 -20.02052 -19.56704 -18.23369 -17.57427 -17.46609 -16.91160 -16.87179 -16.28570 -15.67691 -15.30660 -14.77495 -14.72981 -14.18868 -14.00168 -13.70943 -13.63704 -13.34953 -13.22402 -13.07949 -12.83181 -12.53982 -12.35930 -11.87841 -11.83646 -11.76010 -11.42195 -11.37448 -11.07388 -10.90560 -10.87552 -10.57326 -10.46111 -10.33688 -10.17860 -10.11694 -9.82753 -9.76102 -9.64434 -9.61022 -9.29043 -8.74011 -8.70434 -6.90156 -5.69579 -3.10330 0.71366 1.82200 2.07626 2.80240 2.82284 3.36394 3.41857 3.44476 3.99797 4.15583 4.44472 4.46982 4.65782 4.70169 4.72592 4.82817 4.88183 5.07493 5.08477 5.19486 5.30535 5.38614 5.46681 5.49544 5.57598 5.61959 5.68268 5.75557 5.84097 5.94102 5.97515 6.07183 6.10213 6.16365 6.22607 6.33412 6.36048 6.41494 6.59689 6.64429 6.80926 6.89309 6.94895 7.13721 7.47297 7.55114 7.79793 7.81350 8.10705 8.31289 9.15471 9.77110 10.46907 11.35199 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.003199 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.139759 B = 8750.354708 C = 9520.741996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.258 5.258 3 N -0.064 5.064 4 N -0.275 5.275 5 C -0.019 4.019 6 C -0.065 4.065 7 C 0.587 3.413 8 O -0.542 6.542 9 N -0.572 5.572 10 C 0.071 3.929 11 C -0.140 4.140 12 C -0.144 4.144 13 C -0.083 4.083 14 C -0.083 4.083 15 C -0.129 4.129 16 C 0.147 3.853 17 N -0.596 5.596 18 C -0.219 4.219 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.119 3.881 27 C 0.127 3.873 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.219 0.781 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.009 0.991 43 H 0.104 0.896 44 H 0.251 0.749 45 H 0.019 0.981 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.826 16.723 0.611 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.054 5.054 3 N -0.045 5.045 4 N -0.138 5.138 5 C -0.178 4.178 6 C -0.199 4.199 7 C 0.373 3.627 8 O -0.420 6.420 9 N -0.303 5.303 10 C -0.052 4.052 11 C -0.178 4.178 12 C -0.180 4.180 13 C -0.120 4.120 14 C -0.085 4.085 15 C -0.168 4.168 16 C 0.021 3.979 17 N -0.320 5.320 18 C -0.347 4.347 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.007 4.007 27 C 0.006 3.994 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.235 0.765 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.122 0.878 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.090 0.910 47 H 0.108 0.892 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.259 17.861 0.415 19.683 hybrid contribution 0.682 -1.579 0.064 1.722 sum -7.576 16.282 0.480 17.965 Atomic orbital electron populations 1.22548 0.71537 1.06754 1.05720 1.47629 1.09808 1.03462 1.44528 1.78251 0.96909 1.11578 1.17734 1.74939 1.09033 1.12793 1.17022 1.24982 0.97854 0.91789 1.03205 1.21990 0.91572 0.90956 1.15379 1.16805 0.85205 0.82724 0.77966 1.90772 1.19480 1.82752 1.48982 1.47388 1.10362 1.07400 1.65108 1.22518 0.81454 1.02799 0.98470 1.21364 0.99925 0.99262 0.97244 1.20821 0.99079 0.94735 1.03394 1.20824 0.95787 0.98937 0.96462 1.21466 0.95835 0.94027 0.97183 1.22719 0.98811 0.94686 1.00594 1.21689 0.84368 0.92234 0.99570 1.44760 1.03865 1.08835 1.74530 1.19062 0.82941 0.96204 1.36478 0.90413 1.24766 0.97601 0.96486 1.01744 1.69781 1.29654 1.07847 1.49530 0.86057 0.83886 0.78655 0.77243 1.20536 1.21855 1.21809 1.22430 0.94878 0.89724 0.93624 1.22201 0.98289 0.77383 1.01544 0.88802 0.87801 0.86547 0.76471 0.88810 0.88569 0.91896 0.90269 0.92502 0.88319 0.91136 0.93272 0.92200 0.92863 0.97302 0.87791 0.93804 0.96385 0.91036 0.89161 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.98 59.84 0.66 1.22 16 2 N -0.26 -2.90 3.79 -64.12 -0.24 -3.14 16 3 N -0.06 -0.81 13.14 60.35 0.79 -0.02 16 4 N -0.27 -3.61 12.35 30.47 0.38 -3.23 16 5 C -0.02 -0.21 9.07 -17.35 -0.16 -0.37 16 6 C -0.06 -0.77 6.70 -82.33 -0.55 -1.32 16 7 C 0.59 7.56 7.57 -12.61 -0.10 7.46 16 8 O -0.54 -8.03 14.36 5.26 0.08 -7.95 16 9 N -0.57 -6.93 2.30 -174.14 -0.40 -7.33 16 10 C 0.07 0.73 4.81 -4.18 -0.02 0.71 16 11 C -0.14 -1.44 4.04 -28.71 -0.12 -1.56 16 12 C -0.14 -1.95 5.02 -29.63 -0.15 -2.10 16 13 C -0.08 -1.26 4.89 -27.98 -0.14 -1.40 16 14 C -0.08 -1.30 0.57 -154.17 -0.09 -1.38 16 15 C -0.13 -2.27 5.91 -25.64 -0.15 -2.43 16 16 C 0.15 3.35 6.01 -2.88 -0.02 3.33 16 17 N -0.60 -13.87 3.35 -169.49 -0.57 -14.44 16 18 C -0.22 -5.65 10.37 -15.06 -0.16 -5.81 16 19 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -25.89 10.21 55.49 0.57 -25.32 16 22 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.12 2.14 4.52 -2.39 -0.01 2.13 16 27 C 0.13 1.72 4.82 -3.07 -0.01 1.71 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.12 0.95 6.55 -51.93 -0.34 0.61 16 31 H 0.22 1.94 3.61 -52.49 -0.19 1.75 16 32 H 0.09 0.82 4.33 -51.93 -0.22 0.60 16 33 H 0.10 1.01 5.78 -51.93 -0.30 0.71 16 34 H 0.06 0.67 7.36 -51.93 -0.38 0.28 16 35 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.54 4.42 -51.93 -0.23 1.31 16 38 H 0.07 1.25 7.69 -51.93 -0.40 0.85 16 39 H 0.05 0.73 7.58 -51.93 -0.39 0.33 16 40 H 0.06 1.03 7.71 -51.93 -0.40 0.63 16 41 H 0.05 0.85 7.78 -51.93 -0.40 0.45 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.10 2.72 5.87 -51.93 -0.30 2.41 16 44 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.02 0.34 7.65 -51.93 -0.40 -0.06 16 46 H 0.07 1.19 3.45 -51.93 -0.18 1.02 16 47 H 0.09 1.29 6.84 -51.93 -0.36 0.94 16 48 H 0.07 0.91 7.64 -51.93 -0.40 0.52 16 LS Contribution 352.14 15.07 5.31 5.31 Total: -1.00 -31.17 352.14 -6.77 -37.94 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.55 Total: 2.13 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.10 Total: -0.19 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.52 Total: -53.49 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.08 Total: -7.95 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.17 -6.77 -37.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045935993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.779 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds