Wall clock time and date at job start Tue Mar 31 2020 18:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47001 * 2 1 4 4 N 1.28521 * 124.43992 * 89.97721 * 3 2 1 5 5 C 1.31139 * 109.05496 * 180.02562 * 4 3 2 6 6 C 1.40917 * 105.77684 * 359.97438 * 5 4 3 7 7 C 1.47803 * 127.23501 * 180.02562 * 6 5 4 8 8 O 1.21558 * 120.00117 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99707 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99620 * 179.72314 * 9 7 6 11 11 C 1.52999 * 109.46926 * 180.27723 * 10 9 7 12 12 H 1.09003 * 109.43288 * 59.92648 * 11 10 9 13 13 C 1.53143 * 109.43358 * 179.79500 * 11 10 9 14 14 C 1.53699 * 108.88201 * 66.17732 * 13 11 10 15 15 H 1.08995 * 112.58956 * 187.92461 * 14 13 11 16 16 C 1.54609 * 107.83070 * 312.22614 * 14 13 11 17 17 C 1.54311 * 104.74805 * 88.65979 * 16 14 13 18 18 C 1.54609 * 104.75493 * 0.02562 * 17 16 14 19 19 H 1.09006 * 112.69167 * 147.07312 * 18 17 16 20 20 C 1.53145 * 109.43805 * 300.02048 * 11 10 9 21 21 N 1.48292 * 107.27511 * 64.00348 * 14 13 11 22 22 C 1.36933 * 128.21339 * 107.41808 * 21 14 13 23 23 H 1.07999 * 120.00391 * 168.93694 * 22 21 14 24 24 C 1.38821 * 120.00018 * 348.94209 * 22 21 14 25 25 N 1.31620 * 119.99358 * 340.24398 * 24 22 21 26 26 Si 1.86794 * 120.00205 * 160.23988 * 24 22 21 27 27 H 1.48495 * 109.46957 * 84.99521 * 26 24 22 28 28 H 1.48502 * 109.47280 * 204.99610 * 26 24 22 29 29 H 1.48503 * 109.47314 * 324.99611 * 26 24 22 30 30 N 1.28583 * 124.44734 * 270.31323 * 3 2 1 31 31 H 1.08997 * 109.47523 * 299.99876 * 1 2 3 32 32 H 1.08999 * 109.47206 * 59.99863 * 1 2 3 33 33 H 1.09004 * 109.47376 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47087 * 240.00400 * 2 1 3 35 35 H 1.08999 * 109.47206 * 120.00137 * 2 1 3 36 36 H 1.07997 * 127.10618 * 180.02562 * 5 4 3 37 37 H 0.97002 * 120.00453 * 0.02562 * 9 7 6 38 38 H 1.08991 * 109.47271 * 300.28184 * 10 9 7 39 39 H 1.09001 * 109.46793 * 60.28124 * 10 9 7 40 40 H 1.09003 * 109.57205 * 185.99613 * 13 11 10 41 41 H 1.09004 * 109.56831 * 306.35956 * 13 11 10 42 42 H 1.08999 * 110.38046 * 207.47594 * 16 14 13 43 43 H 1.08999 * 110.38313 * 329.84373 * 16 14 13 44 44 H 1.09007 * 110.38098 * 241.18533 * 17 16 14 45 45 H 1.09007 * 110.38175 * 118.82585 * 17 16 14 46 46 H 1.08999 * 109.56870 * 53.64198 * 20 11 10 47 47 H 1.08995 * 109.57261 * 174.00814 * 20 11 10 48 48 H 0.97002 * 119.99602 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2602 2.0667 1.0599 5 6 2.6812 3.2589 0.7120 6 6 2.6852 3.2677 -0.6971 7 6 3.0799 4.3827 -1.5834 8 8 3.4525 5.4364 -1.1054 9 7 3.0275 4.2308 -2.9215 10 6 3.4130 5.3382 -3.8000 11 6 3.2568 4.9088 -5.2602 12 1 2.2181 4.6376 -5.4494 13 6 3.6550 6.0685 -6.1777 14 6 5.1586 6.3405 -6.0115 15 1 5.4810 7.2421 -6.5323 16 6 5.4644 6.4000 -4.4971 17 6 5.7736 4.9410 -4.1012 18 6 5.6262 4.1371 -5.4136 19 1 6.3114 3.2911 -5.4677 20 6 4.1569 3.7007 -5.5353 21 7 5.8793 5.1331 -6.4825 22 6 6.6064 4.9752 -7.6320 23 1 7.2249 4.0998 -7.7638 24 6 6.5486 5.9405 -8.6280 25 7 5.5411 6.7866 -8.6667 26 14 7.9007 6.0388 -9.9131 27 1 7.6062 5.0880 -11.0150 28 1 7.9688 7.4195 -10.4555 29 1 9.2021 5.6869 -9.2903 30 7 2.2553 2.0689 -1.0603 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.9667 4.0666 1.3696 37 1 2.7305 3.3899 -3.3030 38 1 2.7724 6.1978 -3.6035 39 1 4.4518 5.6081 -3.6098 40 1 3.4444 5.8033 -7.2138 41 1 3.0904 6.9602 -5.9051 42 1 6.3295 7.0359 -4.3092 43 1 4.5966 6.7664 -3.9487 44 1 5.0578 4.5895 -3.3579 45 1 6.7909 4.8590 -3.7183 46 1 3.9476 2.9163 -4.8079 47 1 3.9693 3.3272 -6.5419 48 1 5.5009 7.4613 -9.3624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048522607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:41 Heat of formation + Delta-G solvation = 194.012283 kcal Electronic energy + Delta-G solvation = -29885.524396 eV Core-core repulsion = 25982.920989 eV Total energy + Delta-G solvation = -3902.603406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.83800 -41.23224 -38.82226 -35.19181 -34.75923 -33.10918 -32.50820 -31.42409 -30.83068 -30.56774 -29.61531 -26.89957 -25.24273 -24.12534 -23.31565 -23.06682 -21.78199 -20.67736 -20.51474 -19.37362 -18.81276 -17.98563 -17.28162 -16.98931 -16.70199 -15.96043 -15.41646 -15.26684 -14.73072 -14.55630 -14.34238 -14.03348 -13.59460 -13.18894 -13.01516 -12.71421 -12.68244 -12.63844 -12.15826 -11.94959 -11.90972 -11.70943 -11.53531 -11.36209 -11.20496 -11.19326 -10.86995 -10.78839 -10.61931 -10.51895 -10.17357 -10.13663 -9.72193 -9.65235 -9.50141 -9.42982 -9.34608 -9.20330 -8.55099 -8.14738 -6.83040 -5.78240 -3.03839 1.18976 1.79389 1.88340 3.24794 3.31254 3.39895 3.47367 3.49399 3.76057 4.32499 4.38738 4.50158 4.61264 4.76171 4.91222 5.08239 5.17873 5.24322 5.30734 5.44607 5.47433 5.49092 5.54283 5.60908 5.78348 5.80732 5.83957 5.92426 6.08979 6.11829 6.19224 6.30517 6.31528 6.43232 6.43572 6.57726 6.65926 6.68397 6.76628 6.88808 6.97468 7.07862 7.12771 7.53068 7.56594 7.64136 7.76962 7.95801 8.22187 8.28286 9.13980 9.78755 10.57627 11.35734 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024683 B = 0.002699 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.104538 B =10372.917386 C =10757.172701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 N -0.143 5.143 4 N -0.293 5.293 5 C 0.032 3.968 6 C -0.042 4.042 7 C 0.600 3.400 8 O -0.532 6.532 9 N -0.703 5.703 10 C 0.002 3.998 11 C -0.086 4.086 12 H 0.051 0.949 13 C -0.109 4.109 14 C 0.182 3.818 15 H 0.104 0.896 16 C -0.172 4.172 17 C -0.162 4.162 18 C 0.152 3.848 19 H 0.065 0.935 20 C -0.125 4.125 21 N -0.583 5.583 22 C -0.225 4.225 23 H 0.075 0.925 24 C -0.004 4.004 25 N -0.905 5.905 26 Si 0.901 3.099 27 H -0.290 1.290 28 H -0.290 1.290 29 H -0.283 1.283 30 N -0.251 5.251 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.207 0.793 37 H 0.400 0.600 38 H 0.054 0.946 39 H 0.197 0.803 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 -11.382 16.786 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.047 5.047 4 N -0.132 5.132 5 C -0.151 4.151 6 C -0.205 4.205 7 C 0.382 3.618 8 O -0.407 6.407 9 N -0.354 5.354 10 C -0.117 4.117 11 C -0.105 4.105 12 H 0.070 0.930 13 C -0.149 4.149 14 C 0.075 3.925 15 H 0.122 0.878 16 C -0.210 4.210 17 C -0.200 4.200 18 C 0.044 3.956 19 H 0.083 0.917 20 C -0.165 4.165 21 N -0.304 5.304 22 C -0.353 4.353 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.551 5.551 26 Si 0.732 3.268 27 H -0.217 1.217 28 H -0.216 1.216 29 H -0.209 1.209 30 N -0.099 5.099 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.224 0.776 37 H 0.235 0.765 38 H 0.072 0.928 39 H 0.212 0.788 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.769 -11.787 16.823 22.747 hybrid contribution 0.432 0.357 -0.966 1.117 sum -9.337 -11.430 15.857 21.663 Atomic orbital electron populations 1.22194 0.92917 1.04061 1.03825 1.22094 0.96197 0.74192 1.06163 1.48254 1.43831 1.13379 0.99193 1.73991 1.17959 1.05618 1.15660 1.24850 1.01342 0.95151 0.93803 1.23254 1.08593 0.93692 0.94959 1.16631 0.78439 0.84875 0.81817 1.90808 1.47771 1.26693 1.75414 1.46256 1.65835 1.18167 1.05098 1.25361 1.09402 0.87465 0.89440 1.21272 0.98280 0.97797 0.93111 0.93011 1.22016 0.98786 0.94596 0.99523 1.21427 0.89462 0.93010 0.88640 0.87811 1.23509 1.01018 0.95703 1.00800 1.23405 1.00853 0.96388 0.99400 1.21501 0.93026 0.92506 0.88613 0.91709 1.22213 0.97981 0.95717 1.00550 1.45213 1.58628 1.07158 1.19418 1.18924 1.17632 1.06209 0.92550 0.90749 1.24705 0.97955 0.99881 0.97607 1.69973 1.28345 1.21842 1.34944 0.86314 0.82351 0.76880 0.81294 1.21690 1.21648 1.20863 1.74371 1.15088 1.04592 1.15805 0.91358 0.91246 0.89412 0.87022 0.87091 0.77587 0.76474 0.92822 0.78786 0.90157 0.93976 0.92547 0.89268 0.88872 0.92912 0.93984 0.91825 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.24 37.16 0.38 -0.41 16 2 C 0.13 0.74 7.24 -4.04 -0.03 0.71 16 3 N -0.14 -1.46 3.94 -10.61 -0.04 -1.50 16 4 N -0.29 -3.29 12.01 30.90 0.37 -2.92 16 5 C 0.03 0.38 12.04 -16.84 -0.20 0.17 16 6 C -0.04 -0.55 7.21 -82.68 -0.60 -1.15 16 7 C 0.60 9.01 7.59 -12.35 -0.09 8.92 16 8 O -0.53 -9.31 16.95 5.31 0.09 -9.22 16 9 N -0.70 -10.06 4.37 -61.26 -0.27 -10.32 16 10 C 0.00 0.02 2.68 -4.04 -0.01 0.01 16 11 C -0.09 -1.47 2.76 -90.47 -0.25 -1.72 16 12 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 13 C -0.11 -2.23 5.33 -26.29 -0.14 -2.37 16 14 C 0.18 4.05 3.16 -65.73 -0.21 3.85 16 15 H 0.10 2.67 6.47 -51.93 -0.34 2.33 16 16 C -0.17 -3.25 5.72 -25.20 -0.14 -3.39 16 17 C -0.16 -2.91 5.72 -25.20 -0.14 -3.06 16 18 C 0.15 3.02 4.32 -65.72 -0.28 2.73 16 19 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 20 C -0.12 -2.21 5.28 -26.26 -0.14 -2.35 16 21 N -0.58 -14.00 2.82 -152.74 -0.43 -14.43 16 22 C -0.23 -6.04 10.33 -15.06 -0.16 -6.19 16 23 H 0.07 1.96 7.90 -52.49 -0.41 1.55 16 24 C 0.00 -0.11 5.30 -17.43 -0.09 -0.21 16 25 N -0.91 -25.27 11.00 55.49 0.61 -24.66 16 26 Si 0.90 21.56 29.60 -169.99 -5.03 16.53 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 30 N -0.25 -3.01 11.84 33.42 0.40 -2.62 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.21 1.94 8.06 -52.49 -0.42 1.51 16 37 H 0.40 5.24 7.08 -40.82 -0.29 4.95 16 38 H 0.05 0.88 8.00 -51.93 -0.42 0.46 16 39 H 0.20 3.31 1.12 -165.91 -0.19 3.12 16 40 H 0.08 1.90 8.07 -51.93 -0.42 1.49 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.56 4.84 -51.93 -0.25 1.31 16 44 H 0.09 1.56 3.95 -51.92 -0.21 1.35 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.04 0.64 6.71 -51.93 -0.35 0.29 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -31.27 368.87 -7.93 -39.20 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.07 Total: 8.84 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.11 Total: -4.45 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.64 Total: -56.46 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.27 -7.93 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048522607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.207 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 194.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds