Wall clock time and date at job start Tue Mar 31 2020 18:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47001 * 2 1 4 4 N 1.28521 * 124.43992 * 89.97721 * 3 2 1 5 5 C 1.31139 * 109.05496 * 180.02562 * 4 3 2 6 6 C 1.40917 * 105.77684 * 359.97438 * 5 4 3 7 7 C 1.47803 * 127.23501 * 180.02562 * 6 5 4 8 8 O 1.21558 * 120.00117 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99707 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99620 * 179.72314 * 9 7 6 11 11 C 1.52999 * 109.46926 * 180.27723 * 10 9 7 12 12 H 1.09003 * 109.43288 * 59.92648 * 11 10 9 13 13 C 1.53143 * 109.43358 * 179.79500 * 11 10 9 14 14 C 1.53699 * 108.88201 * 66.17732 * 13 11 10 15 15 H 1.08995 * 112.58956 * 187.92461 * 14 13 11 16 16 C 1.54609 * 107.83070 * 312.22614 * 14 13 11 17 17 C 1.54311 * 104.74805 * 88.65979 * 16 14 13 18 18 C 1.54609 * 104.75493 * 0.02562 * 17 16 14 19 19 H 1.09006 * 112.69167 * 147.07312 * 18 17 16 20 20 C 1.53145 * 109.43805 * 300.02048 * 11 10 9 21 21 N 1.48292 * 107.27511 * 64.00348 * 14 13 11 22 22 C 1.36933 * 128.21339 * 107.41808 * 21 14 13 23 23 H 1.07999 * 120.00391 * 168.93694 * 22 21 14 24 24 C 1.38821 * 120.00018 * 348.94209 * 22 21 14 25 25 N 1.31620 * 119.99358 * 340.24398 * 24 22 21 26 26 Si 1.86794 * 120.00205 * 160.23988 * 24 22 21 27 27 H 1.48495 * 109.46957 * 84.99521 * 26 24 22 28 28 H 1.48502 * 109.47280 * 204.99610 * 26 24 22 29 29 H 1.48503 * 109.47314 * 324.99611 * 26 24 22 30 30 N 1.28583 * 124.44734 * 270.31323 * 3 2 1 31 31 H 1.08997 * 109.47523 * 299.99876 * 1 2 3 32 32 H 1.08999 * 109.47206 * 59.99863 * 1 2 3 33 33 H 1.09004 * 109.47376 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47087 * 240.00400 * 2 1 3 35 35 H 1.08999 * 109.47206 * 120.00137 * 2 1 3 36 36 H 1.07997 * 127.10618 * 180.02562 * 5 4 3 37 37 H 0.97002 * 120.00453 * 0.02562 * 9 7 6 38 38 H 1.08991 * 109.47271 * 300.28184 * 10 9 7 39 39 H 1.09001 * 109.46793 * 60.28124 * 10 9 7 40 40 H 1.09003 * 109.57205 * 185.99613 * 13 11 10 41 41 H 1.09004 * 109.56831 * 306.35956 * 13 11 10 42 42 H 1.08999 * 110.38046 * 207.47594 * 16 14 13 43 43 H 1.08999 * 110.38313 * 329.84373 * 16 14 13 44 44 H 1.09007 * 110.38098 * 241.18533 * 17 16 14 45 45 H 1.09007 * 110.38175 * 118.82585 * 17 16 14 46 46 H 1.08999 * 109.56870 * 53.64198 * 20 11 10 47 47 H 1.08995 * 109.57261 * 174.00814 * 20 11 10 48 48 H 0.97002 * 119.99602 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2602 2.0667 1.0599 5 6 2.6812 3.2589 0.7120 6 6 2.6852 3.2677 -0.6971 7 6 3.0799 4.3827 -1.5834 8 8 3.4525 5.4364 -1.1054 9 7 3.0275 4.2308 -2.9215 10 6 3.4130 5.3382 -3.8000 11 6 3.2568 4.9088 -5.2602 12 1 2.2181 4.6376 -5.4494 13 6 3.6550 6.0685 -6.1777 14 6 5.1586 6.3405 -6.0115 15 1 5.4810 7.2421 -6.5323 16 6 5.4644 6.4000 -4.4971 17 6 5.7736 4.9410 -4.1012 18 6 5.6262 4.1371 -5.4136 19 1 6.3114 3.2911 -5.4677 20 6 4.1569 3.7007 -5.5353 21 7 5.8793 5.1331 -6.4825 22 6 6.6064 4.9752 -7.6320 23 1 7.2249 4.0998 -7.7638 24 6 6.5486 5.9405 -8.6280 25 7 5.5411 6.7866 -8.6667 26 14 7.9007 6.0388 -9.9131 27 1 7.6062 5.0880 -11.0150 28 1 7.9688 7.4195 -10.4555 29 1 9.2021 5.6869 -9.2903 30 7 2.2553 2.0689 -1.0603 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.9667 4.0666 1.3696 37 1 2.7305 3.3899 -3.3030 38 1 2.7724 6.1978 -3.6035 39 1 4.4518 5.6081 -3.6098 40 1 3.4444 5.8033 -7.2138 41 1 3.0904 6.9602 -5.9051 42 1 6.3295 7.0359 -4.3092 43 1 4.5966 6.7664 -3.9487 44 1 5.0578 4.5895 -3.3579 45 1 6.7909 4.8590 -3.7183 46 1 3.9476 2.9163 -4.8079 47 1 3.9693 3.3272 -6.5419 48 1 5.5009 7.4613 -9.3624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048522607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:40 Heat of formation + Delta-G solvation = 173.769159 kcal Electronic energy + Delta-G solvation = -29886.402203 eV Core-core repulsion = 25982.920989 eV Total energy + Delta-G solvation = -3903.481214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.67997 -42.72108 -40.08085 -36.24714 -35.77995 -34.60762 -33.68014 -32.91129 -32.33568 -31.57308 -31.16399 -28.43569 -26.25782 -25.30537 -24.83726 -24.39511 -22.52091 -22.18010 -21.70994 -20.90731 -20.44541 -19.01891 -18.63173 -18.12475 -17.57258 -17.47297 -16.82670 -16.35300 -16.01135 -15.94847 -15.40951 -15.08160 -14.90559 -14.55564 -14.41313 -14.21591 -13.72146 -13.64033 -13.41241 -13.15776 -13.09071 -13.04635 -12.95660 -12.77997 -12.67006 -12.54198 -12.33866 -12.28725 -12.04040 -12.00888 -11.50914 -11.49293 -11.22737 -11.14873 -10.99972 -10.87578 -10.84582 -10.49720 -10.42268 -9.49222 -8.75332 -7.83556 -5.08599 0.25118 0.91603 1.22849 1.47176 1.50132 1.57933 2.14556 2.22294 2.53940 2.92469 3.33077 3.61149 3.77061 3.93681 3.95497 3.96090 3.97252 4.03250 4.12802 4.26722 4.27837 4.30919 4.39903 4.56271 4.59734 4.62840 4.70855 4.74093 4.76800 4.80290 4.91424 4.97942 5.02401 5.04969 5.12416 5.16965 5.21062 5.29838 5.39326 5.48237 5.53167 5.57103 5.59076 5.59592 5.81219 5.90498 6.27986 6.48503 7.06229 7.12238 7.16761 7.80923 8.61751 9.29056 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024683 B = 0.002699 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.104538 B =10372.917386 C =10757.172701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 N -0.133 5.133 4 N -0.298 5.298 5 C 0.028 3.972 6 C -0.064 4.064 7 C 0.604 3.396 8 O -0.559 6.559 9 N -0.696 5.696 10 C 0.013 3.987 11 C -0.075 4.075 12 H 0.069 0.931 13 C -0.101 4.101 14 C 0.175 3.825 15 H 0.062 0.938 16 C -0.163 4.163 17 C -0.149 4.149 18 C 0.143 3.857 19 H 0.065 0.935 20 C -0.116 4.116 21 N -0.605 5.605 22 C -0.234 4.234 23 H 0.073 0.927 24 C -0.056 4.056 25 N -0.929 5.929 26 Si 0.961 3.039 27 H -0.288 1.288 28 H -0.296 1.296 29 H -0.278 1.278 30 N -0.252 5.252 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.222 0.778 37 H 0.408 0.592 38 H 0.055 0.945 39 H 0.188 0.812 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 -13.450 18.803 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.038 5.038 4 N -0.138 5.138 5 C -0.155 4.155 6 C -0.226 4.226 7 C 0.388 3.612 8 O -0.437 6.437 9 N -0.347 5.347 10 C -0.106 4.106 11 C -0.094 4.094 12 H 0.087 0.913 13 C -0.141 4.141 14 C 0.069 3.931 15 H 0.081 0.919 16 C -0.201 4.201 17 C -0.187 4.187 18 C 0.036 3.964 19 H 0.083 0.917 20 C -0.155 4.155 21 N -0.327 5.327 22 C -0.363 4.363 23 H 0.091 0.909 24 C -0.251 4.251 25 N -0.576 5.576 26 Si 0.790 3.210 27 H -0.215 1.215 28 H -0.223 1.223 29 H -0.204 1.204 30 N -0.102 5.102 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.239 0.761 37 H 0.245 0.755 38 H 0.073 0.927 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.059 0.941 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.481 -13.892 18.863 25.664 hybrid contribution 0.598 0.877 -1.544 1.874 sum -9.883 -13.016 17.319 23.812 Atomic orbital electron populations 1.22171 0.92101 1.05533 1.02567 1.22636 0.96853 0.72264 1.08149 1.48816 1.42177 1.14282 0.98513 1.74008 1.18153 1.05594 1.16014 1.25157 1.01011 0.95756 0.93559 1.22974 1.10568 0.93839 0.95207 1.16772 0.77642 0.84937 0.81838 1.90794 1.49030 1.27949 1.75885 1.46070 1.65817 1.17984 1.04866 1.24985 1.08869 0.88119 0.88592 1.21127 0.98969 0.96103 0.93203 0.91295 1.21817 0.97745 0.96481 0.98077 1.21357 0.90397 0.91078 0.90315 0.91939 1.23460 1.01773 0.96596 0.98284 1.23328 1.01697 0.95145 0.98576 1.21747 0.94390 0.92086 0.88194 0.91695 1.22088 0.96425 0.96743 1.00281 1.45404 1.58846 1.08978 1.19436 1.19207 1.17622 1.05988 0.93482 0.90918 1.25375 0.99741 1.00203 0.99742 1.70134 1.29610 1.22371 1.35482 0.85376 0.80146 0.76257 0.79183 1.21467 1.22267 1.20370 1.74324 1.14942 1.04357 1.16533 0.92361 0.92650 0.86594 0.85295 0.84946 0.76118 0.75492 0.92683 0.79703 0.94152 0.92872 0.92890 0.87313 0.86946 0.92567 0.90568 0.94090 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 71.98 0.74 -0.35 16 2 C 0.12 0.95 7.24 86.38 0.63 1.57 16 3 N -0.13 -2.36 3.94 -187.49 -0.74 -3.10 16 4 N -0.30 -6.01 12.01 -56.17 -0.67 -6.68 16 5 C 0.03 0.60 12.04 85.45 1.03 1.63 16 6 C -0.06 -1.56 7.21 42.24 0.30 -1.26 16 7 C 0.60 16.84 7.59 86.77 0.66 17.50 16 8 O -0.56 -18.59 16.95 -3.90 -0.07 -18.65 16 9 N -0.70 -18.06 4.37 -466.01 -2.04 -20.09 16 10 C 0.01 0.40 2.68 86.38 0.23 0.63 16 11 C -0.08 -2.46 2.76 -10.70 -0.03 -2.49 16 12 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 13 C -0.10 -4.17 5.33 30.88 0.16 -4.00 16 14 C 0.18 7.99 3.16 45.43 0.14 8.13 16 15 H 0.06 3.36 6.47 -2.39 -0.02 3.35 16 16 C -0.16 -6.05 5.72 31.59 0.18 -5.87 16 17 C -0.15 -5.12 5.72 31.59 0.18 -4.94 16 18 C 0.14 5.55 4.32 45.45 0.20 5.75 16 19 H 0.06 2.50 8.14 -2.38 -0.02 2.49 16 20 C -0.12 -3.93 5.28 30.90 0.16 -3.77 16 21 N -0.60 -29.48 2.82 -637.16 -1.80 -31.28 16 22 C -0.23 -12.81 10.33 84.04 0.87 -11.94 16 23 H 0.07 3.89 7.90 -2.91 -0.02 3.87 16 24 C -0.06 -3.12 5.30 84.86 0.45 -2.67 16 25 N -0.93 -53.87 11.00 21.65 0.24 -53.63 16 26 Si 0.96 45.43 29.60 68.60 2.03 47.46 16 27 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 30 N -0.25 -5.43 11.84 -48.17 -0.57 -6.00 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 34 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.22 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.41 9.39 7.08 -92.71 -0.66 8.73 16 38 H 0.05 1.67 8.00 -2.39 -0.02 1.65 16 39 H 0.19 5.90 1.12 -109.45 -0.12 5.78 16 40 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 41 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.11 3.63 4.84 -2.39 -0.01 3.62 16 44 H 0.11 3.46 3.95 -2.38 -0.01 3.45 16 45 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.08 2.07 6.71 -2.39 -0.02 2.06 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -69.16 368.87 2.51 -66.65 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.22 Total: 27.39 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.90 Total: -2.07 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -5.58 Total: -120.78 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.07 Total: -18.65 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.16 2.51 -66.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048522607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.423 kcal (2) G-P(sol) polarization free energy of solvation -69.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds