Wall clock time and date at job start Tue Mar 31 2020 18:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.35309 * 125.86775 * 2 1 4 4 C 1.35351 * 106.17490 * 180.18605 * 3 2 1 5 5 C 1.50701 * 126.75217 * 179.85426 * 4 3 2 6 6 C 1.52998 * 109.47415 * 124.70878 * 5 4 3 7 7 C 1.50697 * 109.46945 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00313 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99641 * 179.97438 * 7 6 5 10 10 C 1.47852 * 122.22963 * 0.02562 * 9 7 6 11 11 C 1.52711 * 111.05860 * 127.50415 * 10 9 7 12 12 C 1.53871 * 111.52454 * 48.54241 * 11 10 9 13 13 C 1.51081 * 107.34099 * 303.06906 * 12 11 10 14 14 H 1.09006 * 108.72984 * 308.52560 * 13 12 11 15 15 C 1.45730 * 122.22619 * 179.71480 * 9 7 6 16 16 H 1.09003 * 111.06846 * 119.47699 * 15 9 7 17 17 C 1.53127 * 115.92262 * 350.49885 * 15 9 7 18 18 C 1.55464 * 101.19004 * 206.28524 * 17 15 9 19 19 N 1.45024 * 119.19769 * 183.26625 * 13 12 11 20 20 C 1.36936 * 126.56187 * 28.80383 * 19 13 12 21 21 H 1.08002 * 119.99936 * 353.01741 * 20 19 13 22 22 C 1.38812 * 120.00040 * 173.02260 * 20 19 13 23 23 N 1.31621 * 119.99788 * 5.66305 * 22 20 19 24 24 Si 1.86804 * 120.00126 * 185.66561 * 22 20 19 25 25 H 1.48496 * 109.46986 * 94.98428 * 24 22 20 26 26 H 1.48498 * 109.46789 * 214.98852 * 24 22 20 27 27 H 1.48504 * 109.46651 * 334.98313 * 24 22 20 28 28 N 1.33771 * 106.49490 * 359.58850 * 4 3 2 29 29 N 1.28635 * 108.88376 * 0.26146 * 28 4 3 30 30 H 1.08998 * 109.47152 * 270.29771 * 1 2 3 31 31 H 1.08998 * 109.46574 * 30.29778 * 1 2 3 32 32 H 1.08996 * 109.46896 * 150.29647 * 1 2 3 33 33 H 1.08000 * 126.91692 * 0.03157 * 3 2 1 34 34 H 1.09007 * 109.47071 * 4.70445 * 5 4 3 35 35 H 1.09000 * 109.46620 * 244.71179 * 5 4 3 36 36 H 1.09000 * 109.47021 * 300.00063 * 6 5 4 37 37 H 1.08997 * 109.46902 * 59.99454 * 6 5 4 38 38 H 1.09003 * 109.16208 * 247.91448 * 10 9 7 39 39 H 1.09001 * 109.16102 * 7.09949 * 10 9 7 40 40 H 1.09008 * 109.06568 * 169.06227 * 11 10 9 41 41 H 1.08999 * 109.07205 * 288.08113 * 11 10 9 42 42 H 1.08999 * 109.88280 * 62.52295 * 12 11 10 43 43 H 1.08997 * 109.88236 * 183.60995 * 12 11 10 44 44 H 1.08995 * 111.00545 * 88.44169 * 17 15 9 45 45 H 1.09008 * 111.45533 * 324.32237 * 17 15 9 46 46 H 1.09001 * 109.96437 * 263.46234 * 18 17 15 47 47 H 1.09001 * 109.99292 * 142.23662 * 18 17 15 48 48 H 0.97008 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6404 -0.0042 5 6 4.7881 1.4734 -0.0090 6 6 5.6713 1.0714 1.1739 7 6 6.9274 1.9040 1.1686 8 8 7.0991 2.7372 0.3042 9 7 7.8595 1.7234 2.1252 10 6 7.7007 0.7228 3.2020 11 6 8.9214 -0.1909 3.2864 12 6 10.2313 0.6164 3.2940 13 6 10.2442 1.4655 2.0445 14 1 10.0449 0.8260 1.1845 15 6 9.0940 2.4969 2.1632 16 1 9.1699 3.0686 3.0882 17 6 9.3781 3.3650 0.9342 18 6 10.9297 3.4520 0.9785 19 7 11.4071 2.2828 1.7564 20 6 12.6988 2.0239 2.1300 21 1 12.9145 1.1978 2.7913 22 6 13.7311 2.8234 1.6587 23 7 13.4599 3.8952 0.9444 24 14 15.5052 2.3781 2.0380 25 1 16.0711 1.5952 0.9102 26 1 16.2978 3.6198 2.2257 27 1 15.5568 1.5654 3.2799 28 7 3.4576 -0.6952 0.0026 29 7 2.2192 -1.0430 0.0050 30 1 -0.3633 0.0053 1.0276 31 1 -0.3632 0.8873 -0.5185 32 1 -0.3633 -0.8926 -0.5092 33 1 1.9383 2.1281 0.0005 34 1 4.5250 2.5278 0.0757 35 1 5.3302 1.3079 -0.9400 36 1 5.1291 1.2369 2.1049 37 1 5.9342 0.0171 1.0892 38 1 7.5733 1.2385 4.1538 39 1 6.8153 0.1193 3.0019 40 1 8.8617 -0.7813 4.2008 41 1 8.9233 -0.8629 2.4282 42 1 10.2681 1.2551 4.1765 43 1 11.0847 -0.0617 3.2902 44 1 8.9286 4.3522 1.0409 45 1 9.0402 2.8814 0.0177 46 1 11.2368 4.3755 1.4693 47 1 11.3339 3.4163 -0.0332 48 1 14.1813 4.4537 0.6147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049935354.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:05 Heat of formation + Delta-G solvation = 100.147521 kcal Electronic energy + Delta-G solvation = -29077.270631 eV Core-core repulsion = 25170.596944 eV Total energy + Delta-G solvation = -3906.673688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.51413 -40.29250 -37.87741 -35.41600 -35.34913 -33.65965 -32.54335 -32.13248 -30.46217 -28.85162 -28.27399 -28.11248 -25.64660 -24.42734 -23.75035 -22.37021 -21.44831 -21.35285 -20.45453 -19.61926 -18.60532 -17.53420 -16.93455 -16.72885 -16.05061 -15.68545 -15.55688 -15.06808 -14.70540 -14.40729 -14.19075 -14.01669 -13.90735 -13.71329 -13.53714 -13.28159 -12.82391 -12.65649 -12.39721 -12.24978 -12.14157 -11.84841 -11.68320 -11.53384 -11.42748 -11.07435 -10.86164 -10.80980 -10.64402 -10.45280 -10.39253 -10.33030 -10.04491 -9.92903 -9.77359 -9.54586 -9.42234 -8.90079 -8.51181 -8.13992 -6.75580 -5.66276 -2.99381 1.29017 2.02897 2.27795 2.92536 3.26461 3.43874 3.48855 3.50799 3.96979 4.21471 4.46099 4.48032 4.54396 4.72457 4.75327 4.85052 4.90352 5.07178 5.14397 5.17597 5.35474 5.38391 5.44735 5.50013 5.51918 5.65766 5.77085 5.82151 5.85416 5.93796 5.96558 6.06633 6.09785 6.15827 6.23288 6.33735 6.36118 6.47025 6.63023 6.79347 6.85775 6.96692 7.26287 7.64140 7.72309 7.80815 7.89839 8.24672 8.30610 8.51883 9.24603 9.88629 10.57840 11.46497 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.002333 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.198909 B =11997.002280 C =12525.054144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.297 5.297 3 C -0.050 4.050 4 C -0.013 4.013 5 C -0.017 4.017 6 C -0.133 4.133 7 C 0.516 3.484 8 O -0.535 6.535 9 N -0.601 5.601 10 C 0.110 3.890 11 C -0.130 4.130 12 C -0.115 4.115 13 C 0.157 3.843 14 H 0.018 0.982 15 C 0.117 3.883 16 H 0.077 0.923 17 C -0.128 4.128 18 C 0.171 3.829 19 N -0.593 5.593 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 N -0.263 5.263 29 N -0.089 5.089 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.191 0.809 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.043 0.957 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.253 -5.691 2.443 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.091 5.091 3 C -0.201 4.201 4 C -0.151 4.151 5 C -0.056 4.056 6 C -0.173 4.173 7 C 0.305 3.695 8 O -0.412 6.412 9 N -0.334 5.334 10 C -0.012 4.012 11 C -0.169 4.169 12 C -0.154 4.154 13 C 0.048 3.952 14 H 0.036 0.964 15 C 0.013 3.987 16 H 0.095 0.905 17 C -0.166 4.166 18 C 0.047 3.953 19 N -0.318 5.318 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.565 5.565 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 N -0.130 5.130 29 N -0.068 5.068 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.208 0.792 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -26.958 -6.691 1.935 27.844 hybrid contribution 0.695 0.902 0.327 1.185 sum -26.263 -5.789 2.263 26.988 Atomic orbital electron populations 1.22255 0.72821 1.05902 1.04966 1.47236 1.09361 1.05026 1.47498 1.23430 0.90884 0.94727 1.11032 1.22114 0.95437 0.91446 1.06133 1.19626 0.89219 0.97340 0.99430 1.21612 0.94290 1.01459 0.99954 1.20452 0.84332 0.83800 0.80959 1.90700 1.78154 1.35693 1.36659 1.48047 1.19893 1.37744 1.27735 1.21699 0.98678 0.90518 0.90351 1.21899 0.94707 0.98047 1.02217 1.21421 0.96067 0.98775 0.99134 1.20667 0.87833 0.91944 0.94749 0.96422 1.22277 0.82416 0.94339 0.99671 0.90475 1.22890 0.98062 0.98611 0.97064 1.21735 0.86839 0.90467 0.96293 1.44081 1.01836 1.22836 1.63027 1.18992 0.81144 1.11661 1.23620 0.90391 1.24829 0.97884 0.97600 1.00076 1.69969 1.30415 1.15587 1.40538 0.86149 0.85013 0.77222 0.77682 1.21682 1.21833 1.20683 1.75073 1.09256 1.12151 1.16505 1.78317 0.96535 1.12152 1.19833 0.89098 0.88306 0.88079 0.79193 0.89282 0.89089 0.89396 0.88350 0.91685 0.90262 0.90977 0.91712 0.91889 0.91489 0.92174 0.89863 0.93282 0.93890 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 11.39 59.85 0.68 0.88 16 2 N -0.30 -2.34 3.74 -68.05 -0.25 -2.59 16 3 C -0.05 -0.39 11.54 -17.05 -0.20 -0.59 16 4 C -0.01 -0.14 6.50 -82.78 -0.54 -0.68 16 5 C -0.02 -0.18 5.08 -27.88 -0.14 -0.32 16 6 C -0.13 -1.50 4.10 -27.89 -0.11 -1.61 16 7 C 0.52 7.89 7.69 -10.99 -0.08 7.81 16 8 O -0.53 -9.87 12.78 5.56 0.07 -9.80 16 9 N -0.60 -9.36 2.92 -164.51 -0.48 -9.84 16 10 C 0.11 1.33 6.32 -3.45 -0.02 1.30 16 11 C -0.13 -1.69 5.93 -26.43 -0.16 -1.84 16 12 C -0.12 -2.00 5.41 -27.24 -0.15 -2.15 16 13 C 0.16 3.34 2.58 -68.66 -0.18 3.16 16 14 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 15 C 0.12 2.25 3.27 -67.25 -0.22 2.03 16 16 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 17 C -0.13 -2.74 4.95 -25.36 -0.13 -2.87 16 18 C 0.17 4.39 5.44 -1.72 -0.01 4.38 16 19 N -0.59 -15.43 3.34 -163.67 -0.55 -15.98 16 20 C -0.23 -6.32 9.95 -15.06 -0.15 -6.47 16 21 H 0.08 2.09 7.30 -52.49 -0.38 1.71 16 22 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 23 N -0.92 -27.55 10.51 55.49 0.58 -26.97 16 24 Si 0.91 22.40 29.56 -169.99 -5.02 17.37 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 N -0.26 -3.43 12.40 33.29 0.41 -3.02 16 29 N -0.09 -1.04 13.16 60.35 0.79 -0.25 16 30 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.09 1.11 8.10 -51.93 -0.42 0.68 16 36 H 0.09 0.83 8.01 -51.93 -0.42 0.42 16 37 H 0.10 1.12 7.76 -51.93 -0.40 0.72 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.76 6.18 -51.93 -0.32 0.44 16 40 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 43 H 0.07 1.22 7.75 -51.93 -0.40 0.82 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.08 1.87 6.24 -51.92 -0.32 1.55 16 46 H 0.05 1.36 7.44 -51.93 -0.39 0.97 16 47 H 0.04 1.22 7.62 -51.93 -0.40 0.82 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -36.14 377.54 -7.90 -44.04 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.65 Total: -1.40 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.50 Total: 2.73 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.51 Total: -58.64 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.14 -7.90 -44.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049935354.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.189 kcal (2) G-P(sol) polarization free energy of solvation -36.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds