Wall clock time and date at job start Tue Mar 31 2020 18:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.35309 * 125.86775 * 2 1 4 4 C 1.35351 * 106.17490 * 180.18605 * 3 2 1 5 5 C 1.50701 * 126.75217 * 179.85426 * 4 3 2 6 6 C 1.52998 * 109.47415 * 124.70878 * 5 4 3 7 7 C 1.50697 * 109.46945 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00313 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99641 * 179.97438 * 7 6 5 10 10 C 1.47852 * 122.22963 * 0.02562 * 9 7 6 11 11 C 1.52711 * 111.05860 * 127.50415 * 10 9 7 12 12 C 1.53871 * 111.52454 * 48.54241 * 11 10 9 13 13 C 1.51081 * 107.34099 * 303.06906 * 12 11 10 14 14 H 1.09006 * 108.72984 * 308.52560 * 13 12 11 15 15 C 1.45730 * 122.22619 * 179.71480 * 9 7 6 16 16 H 1.09003 * 111.06846 * 119.47699 * 15 9 7 17 17 C 1.53127 * 115.92262 * 350.49885 * 15 9 7 18 18 C 1.55464 * 101.19004 * 206.28524 * 17 15 9 19 19 N 1.45024 * 119.19769 * 183.26625 * 13 12 11 20 20 C 1.36936 * 126.56187 * 28.80383 * 19 13 12 21 21 H 1.08002 * 119.99936 * 353.01741 * 20 19 13 22 22 C 1.38812 * 120.00040 * 173.02260 * 20 19 13 23 23 N 1.31621 * 119.99788 * 5.66305 * 22 20 19 24 24 Si 1.86804 * 120.00126 * 185.66561 * 22 20 19 25 25 H 1.48496 * 109.46986 * 94.98428 * 24 22 20 26 26 H 1.48498 * 109.46789 * 214.98852 * 24 22 20 27 27 H 1.48504 * 109.46651 * 334.98313 * 24 22 20 28 28 N 1.33771 * 106.49490 * 359.58850 * 4 3 2 29 29 N 1.28635 * 108.88376 * 0.26146 * 28 4 3 30 30 H 1.08998 * 109.47152 * 270.29771 * 1 2 3 31 31 H 1.08998 * 109.46574 * 30.29778 * 1 2 3 32 32 H 1.08996 * 109.46896 * 150.29647 * 1 2 3 33 33 H 1.08000 * 126.91692 * 0.03157 * 3 2 1 34 34 H 1.09007 * 109.47071 * 4.70445 * 5 4 3 35 35 H 1.09000 * 109.46620 * 244.71179 * 5 4 3 36 36 H 1.09000 * 109.47021 * 300.00063 * 6 5 4 37 37 H 1.08997 * 109.46902 * 59.99454 * 6 5 4 38 38 H 1.09003 * 109.16208 * 247.91448 * 10 9 7 39 39 H 1.09001 * 109.16102 * 7.09949 * 10 9 7 40 40 H 1.09008 * 109.06568 * 169.06227 * 11 10 9 41 41 H 1.08999 * 109.07205 * 288.08113 * 11 10 9 42 42 H 1.08999 * 109.88280 * 62.52295 * 12 11 10 43 43 H 1.08997 * 109.88236 * 183.60995 * 12 11 10 44 44 H 1.08995 * 111.00545 * 88.44169 * 17 15 9 45 45 H 1.09008 * 111.45533 * 324.32237 * 17 15 9 46 46 H 1.09001 * 109.96437 * 263.46234 * 18 17 15 47 47 H 1.09001 * 109.99292 * 142.23662 * 18 17 15 48 48 H 0.97008 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6404 -0.0042 5 6 4.7881 1.4734 -0.0090 6 6 5.6713 1.0714 1.1739 7 6 6.9274 1.9040 1.1686 8 8 7.0991 2.7372 0.3042 9 7 7.8595 1.7234 2.1252 10 6 7.7007 0.7228 3.2020 11 6 8.9214 -0.1909 3.2864 12 6 10.2313 0.6164 3.2940 13 6 10.2442 1.4655 2.0445 14 1 10.0449 0.8260 1.1845 15 6 9.0940 2.4969 2.1632 16 1 9.1699 3.0686 3.0882 17 6 9.3781 3.3650 0.9342 18 6 10.9297 3.4520 0.9785 19 7 11.4071 2.2828 1.7564 20 6 12.6988 2.0239 2.1300 21 1 12.9145 1.1978 2.7913 22 6 13.7311 2.8234 1.6587 23 7 13.4599 3.8952 0.9444 24 14 15.5052 2.3781 2.0380 25 1 16.0711 1.5952 0.9102 26 1 16.2978 3.6198 2.2257 27 1 15.5568 1.5654 3.2799 28 7 3.4576 -0.6952 0.0026 29 7 2.2192 -1.0430 0.0050 30 1 -0.3633 0.0053 1.0276 31 1 -0.3632 0.8873 -0.5185 32 1 -0.3633 -0.8926 -0.5092 33 1 1.9383 2.1281 0.0005 34 1 4.5250 2.5278 0.0757 35 1 5.3302 1.3079 -0.9400 36 1 5.1291 1.2369 2.1049 37 1 5.9342 0.0171 1.0892 38 1 7.5733 1.2385 4.1538 39 1 6.8153 0.1193 3.0019 40 1 8.8617 -0.7813 4.2008 41 1 8.9233 -0.8629 2.4282 42 1 10.2681 1.2551 4.1765 43 1 11.0847 -0.0617 3.2902 44 1 8.9286 4.3522 1.0409 45 1 9.0402 2.8814 0.0177 46 1 11.2368 4.3755 1.4693 47 1 11.3339 3.4163 -0.0332 48 1 14.1813 4.4537 0.6147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049935354.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:04 Heat of formation + Delta-G solvation = 75.380483 kcal Electronic energy + Delta-G solvation = -29078.344611 eV Core-core repulsion = 25170.596944 eV Total energy + Delta-G solvation = -3907.747667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.17261 -41.67389 -39.34894 -36.89447 -36.07705 -34.57489 -34.08633 -33.79599 -31.48355 -30.51666 -29.66867 -28.66550 -26.84801 -26.27241 -25.03140 -22.97596 -22.82081 -22.54876 -21.71665 -21.33514 -19.85001 -18.62213 -18.04347 -17.53493 -17.22481 -17.19501 -16.74139 -16.60226 -15.89514 -15.72062 -15.45303 -15.31989 -15.12763 -14.78949 -14.37520 -14.18192 -14.08105 -13.79816 -13.70834 -13.46299 -13.34842 -13.14897 -13.08578 -12.86877 -12.72299 -12.55190 -12.27616 -12.19568 -12.07150 -11.92279 -11.76357 -11.69174 -11.59233 -11.51688 -11.40002 -10.94619 -10.74939 -10.31639 -10.05822 -9.49319 -8.88504 -7.85093 -5.20947 0.69176 1.44978 1.47879 1.51075 1.56417 1.62602 1.73475 2.06609 2.50706 3.30891 3.34070 3.44273 3.66105 3.80088 3.94901 4.01227 4.06536 4.10022 4.12340 4.20897 4.27548 4.31399 4.36903 4.38515 4.45456 4.58979 4.63214 4.65968 4.68460 4.70028 4.80214 4.87261 4.94235 5.05688 5.07757 5.13624 5.17048 5.19250 5.30216 5.31156 5.46906 5.49917 5.61770 5.64454 5.73848 5.74935 6.18961 6.60127 7.05957 7.29912 7.54972 7.76103 8.46890 9.27538 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.002333 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.198909 B =11997.002280 C =12525.054144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.030 4.030 4 C -0.036 4.036 5 C -0.010 4.010 6 C -0.117 4.117 7 C 0.512 3.488 8 O -0.573 6.573 9 N -0.603 5.603 10 C 0.106 3.894 11 C -0.121 4.121 12 C -0.111 4.111 13 C 0.150 3.850 14 H -0.004 1.004 15 C 0.134 3.866 16 H 0.080 0.920 17 C -0.109 4.109 18 C 0.181 3.819 19 N -0.613 5.613 20 C -0.233 4.233 21 H 0.089 0.911 22 C -0.071 4.071 23 N -0.953 5.953 24 Si 0.979 3.021 25 H -0.291 1.291 26 H -0.295 1.295 27 H -0.262 1.262 28 N -0.303 5.303 29 N -0.124 5.124 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.232 0.768 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.020 0.980 47 H 0.002 0.998 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.277 -6.804 4.613 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.083 5.083 3 C -0.182 4.182 4 C -0.175 4.175 5 C -0.049 4.049 6 C -0.157 4.157 7 C 0.302 3.698 8 O -0.453 6.453 9 N -0.336 5.336 10 C -0.015 4.015 11 C -0.160 4.160 12 C -0.149 4.149 13 C 0.042 3.958 14 H 0.014 0.986 15 C 0.028 3.972 16 H 0.098 0.902 17 C -0.148 4.148 18 C 0.055 3.945 19 N -0.337 5.337 20 C -0.362 4.362 21 H 0.106 0.894 22 C -0.264 4.264 23 N -0.602 5.602 24 Si 0.807 3.193 25 H -0.218 1.218 26 H -0.222 1.222 27 H -0.187 1.187 28 N -0.169 5.169 29 N -0.103 5.103 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.123 0.877 33 H 0.248 0.752 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.038 0.962 47 H 0.020 0.980 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -30.045 -7.883 4.141 31.337 hybrid contribution 1.523 1.260 -0.401 2.017 sum -28.522 -6.622 3.739 29.518 Atomic orbital electron populations 1.22737 0.69820 1.07682 1.06731 1.47663 1.11014 1.04268 1.45322 1.24001 0.89802 0.96218 1.08188 1.22154 0.96446 0.90934 1.07962 1.19501 0.89256 0.98106 0.98071 1.21549 0.92222 1.00317 1.01615 1.21207 0.85178 0.83532 0.79903 1.90682 1.79062 1.37515 1.38015 1.48151 1.18398 1.38069 1.28980 1.22025 0.99385 0.90055 0.90048 1.21885 0.92425 0.97714 1.03970 1.21399 0.98480 0.98301 0.96754 1.20864 0.86757 0.92280 0.95885 0.98640 1.21843 0.83818 0.93382 0.98136 0.90230 1.22618 0.94554 0.99554 0.98063 1.21452 0.89706 0.89633 0.93665 1.44353 1.02866 1.23530 1.62992 1.19416 0.82240 1.11412 1.23085 0.89376 1.25739 1.02223 0.97785 1.00614 1.70197 1.31169 1.16747 1.42102 0.85053 0.79571 0.76747 0.77954 1.21829 1.22214 1.18670 1.74997 1.10373 1.13622 1.17943 1.78230 0.96618 1.13717 1.21769 0.87286 0.85200 0.87750 0.75169 0.88121 0.91492 0.86514 0.88169 0.89428 0.86906 0.87210 0.92223 0.91616 0.92726 0.91542 0.91032 0.96196 0.98001 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.10 11.39 127.77 1.46 1.56 16 2 N -0.29 -3.77 3.74 -369.22 -1.38 -5.15 16 3 C -0.03 -0.37 11.54 83.49 0.96 0.59 16 4 C -0.04 -0.70 6.50 41.60 0.27 -0.43 16 5 C -0.01 -0.19 5.08 29.85 0.15 -0.04 16 6 C -0.12 -2.36 4.10 29.85 0.12 -2.24 16 7 C 0.51 14.96 7.69 87.66 0.67 15.63 16 8 O -0.57 -21.20 12.78 -3.02 -0.04 -21.24 16 9 N -0.60 -17.69 2.92 -792.78 -2.32 -20.01 16 10 C 0.11 2.13 6.32 86.02 0.54 2.67 16 11 C -0.12 -2.76 5.93 30.79 0.18 -2.57 16 12 C -0.11 -3.70 5.41 30.26 0.16 -3.54 16 13 C 0.15 6.45 2.58 45.31 0.12 6.57 16 14 H 0.00 -0.18 8.06 -2.38 -0.02 -0.20 16 15 C 0.13 5.10 3.27 45.84 0.15 5.25 16 16 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 17 C -0.11 -4.88 4.95 31.48 0.16 -4.73 16 18 C 0.18 9.86 5.44 86.87 0.47 10.33 16 19 N -0.61 -33.08 3.34 -671.73 -2.25 -35.33 16 20 C -0.23 -13.33 9.95 84.03 0.84 -12.49 16 21 H 0.09 4.74 7.30 -2.91 -0.02 4.72 16 22 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 23 N -0.95 -59.99 10.51 21.65 0.23 -59.76 16 24 Si 0.98 47.05 29.56 68.60 2.03 49.08 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 27 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 28 N -0.30 -7.63 12.40 -48.60 -0.60 -8.23 16 29 N -0.12 -2.76 13.16 37.02 0.49 -2.27 16 30 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.13 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.23 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.10 1.75 8.08 -2.38 -0.02 1.73 16 35 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 36 H 0.12 1.73 8.01 -2.39 -0.02 1.71 16 37 H 0.10 2.05 7.76 -2.39 -0.02 2.04 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.60 6.18 -2.39 -0.01 1.59 16 40 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 2.15 8.12 -2.39 -0.02 2.14 16 43 H 0.05 1.94 7.75 -2.39 -0.02 1.92 16 44 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.07 3.38 6.24 -2.38 -0.01 3.36 16 46 H 0.02 1.17 7.44 -2.39 -0.02 1.16 16 47 H 0.00 0.11 7.62 -2.39 -0.02 0.09 16 48 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -85.14 377.54 3.83 -81.31 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.95 Total: 8.74 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.72 Total: 12.86 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -5.83 Total: -130.75 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.04 Total: -21.24 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -85.14 3.83 -81.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049935354.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.688 kcal (2) G-P(sol) polarization free energy of solvation -85.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds