Wall clock time and date at job start Tue Mar 31 2020 17:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47053 * 2 1 4 4 C 1.35313 * 125.87177 * 124.99836 * 3 2 1 5 5 C 1.35347 * 106.17815 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.74858 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46552 * 125.00195 * 6 5 4 8 8 O 1.21278 * 120.00569 * 359.72143 * 7 6 5 9 9 N 1.34784 * 119.99723 * 179.97438 * 7 6 5 10 10 C 1.44506 * 116.63056 * 353.96005 * 9 7 6 11 11 C 1.51631 * 112.65448 * 154.60200 * 10 9 7 12 12 C 1.51325 * 111.97728 * 42.75884 * 11 10 9 13 13 C 1.50703 * 113.54665 * 304.60962 * 12 11 10 14 14 H 1.08997 * 109.33826 * 169.07127 * 13 12 11 15 15 C 1.54186 * 110.50980 * 289.39545 * 13 12 11 16 16 N 1.46928 * 106.26388 * 151.09793 * 15 13 12 17 17 C 1.36930 * 125.37592 * 162.11474 * 16 15 13 18 18 H 1.07998 * 120.00253 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00010 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00043 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47063 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47081 * 119.99728 * 21 19 17 24 24 H 1.48499 * 109.47371 * 240.00005 * 21 19 17 25 25 C 1.46813 * 109.24636 * 342.14862 * 16 15 13 26 26 C 1.44100 * 116.62953 * 173.70762 * 9 7 6 27 27 H 1.08994 * 109.11218 * 73.86622 * 26 9 7 28 28 N 1.33775 * 106.49430 * 0.26326 * 5 4 3 29 29 N 1.28632 * 108.88214 * 359.56145 * 28 5 4 30 30 H 1.08999 * 109.47106 * 60.00160 * 1 2 3 31 31 H 1.09000 * 109.47178 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47079 * 300.00037 * 1 2 3 33 33 H 1.08993 * 109.47506 * 240.00219 * 2 1 3 34 34 H 1.08999 * 109.47106 * 119.99839 * 2 1 3 35 35 H 1.08007 * 126.90530 * 0.02562 * 4 3 2 36 36 H 1.08992 * 109.47384 * 5.00265 * 6 5 4 37 37 H 1.09001 * 109.46818 * 244.99353 * 6 5 4 38 38 H 1.09003 * 108.84526 * 275.42057 * 10 9 7 39 39 H 1.09003 * 108.84990 * 33.77972 * 10 9 7 40 40 H 1.09002 * 108.97548 * 163.40105 * 11 10 9 41 41 H 1.08993 * 108.97727 * 282.19889 * 11 10 9 42 42 H 1.09000 * 108.66928 * 65.66621 * 12 11 10 43 43 H 1.09005 * 108.66294 * 183.69616 * 12 11 10 44 44 H 1.09002 * 110.09346 * 270.29735 * 15 13 12 45 45 H 1.08995 * 110.09822 * 31.83555 * 15 13 12 46 46 H 0.97003 * 119.99995 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.84078 * 120.40136 * 25 16 15 48 48 H 1.09000 * 109.84129 * 241.31022 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8755 1.9192 0.8982 5 6 3.0541 3.2077 0.5242 6 6 3.9229 4.2325 1.2068 7 6 4.8950 4.8103 0.2107 8 8 4.8869 4.4240 -0.9389 9 7 5.7770 5.7528 0.5986 10 6 5.6394 6.2526 1.9475 11 6 6.9409 6.7957 2.5047 12 6 7.6884 7.6296 1.4869 13 6 7.9596 6.9025 0.1951 14 1 8.3200 7.6120 -0.5497 15 6 9.0201 5.8034 0.4062 16 7 8.7298 4.7561 -0.5826 17 6 9.6019 3.7787 -0.9814 18 1 10.5956 3.7370 -0.5604 19 6 9.2092 2.8420 -1.9276 20 7 7.9984 2.8931 -2.4411 21 14 10.3992 1.5090 -2.4722 22 1 11.6871 1.6702 -1.7506 23 1 9.8228 0.1752 -2.1651 24 1 10.6341 1.6221 -3.9341 25 6 7.3573 4.9236 -1.0762 26 6 6.7630 6.1536 -0.3728 27 1 6.2855 6.7751 -1.1303 28 7 2.3026 3.3942 -0.5667 29 7 1.7061 2.2915 -0.8547 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.3271 1.4204 1.7431 36 1 4.4738 3.7587 2.0192 37 1 3.2973 5.0297 1.6083 38 1 4.8944 7.0483 1.9539 39 1 5.2923 5.4429 2.5894 40 1 6.7232 7.4120 3.3770 41 1 7.5719 5.9608 2.8093 42 1 7.1019 8.5221 1.2686 43 1 8.6410 7.9363 1.9192 44 1 10.0181 6.2091 0.2401 45 1 8.9440 5.3984 1.4153 46 1 7.7241 2.2387 -3.1026 47 1 7.3686 5.0806 -2.1548 48 1 6.7677 4.0386 -0.8374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050102031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:25 Heat of formation + Delta-G solvation = 108.056956 kcal Electronic energy + Delta-G solvation = -30119.099996 eV Core-core repulsion = 26212.769288 eV Total energy + Delta-G solvation = -3906.330709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.05211 -40.38204 -37.62612 -35.48070 -35.35486 -33.09336 -32.53641 -31.88086 -30.83157 -29.64470 -28.28654 -26.66455 -25.55491 -24.70316 -23.93598 -22.26518 -21.76797 -21.30375 -20.33608 -19.17027 -17.76508 -17.29342 -16.94606 -16.50856 -16.08667 -15.62049 -15.36613 -14.90104 -14.55950 -14.49568 -14.31364 -14.03808 -13.69977 -13.55525 -13.15987 -13.06653 -12.80199 -12.54708 -12.43624 -12.32997 -12.06027 -11.83252 -11.49850 -11.32561 -11.21828 -10.98184 -10.91698 -10.73078 -10.57470 -10.51998 -10.21316 -10.10455 -9.91536 -9.85957 -9.80063 -9.55404 -9.09321 -8.79431 -8.40224 -7.81663 -6.63118 -5.51765 -2.88760 1.76753 2.41762 2.77228 3.29576 3.46168 3.50883 3.54314 3.61933 4.24838 4.49254 4.57083 4.60631 4.82629 4.84766 4.90058 4.96775 5.01235 5.16292 5.23469 5.26259 5.32609 5.35450 5.44644 5.47785 5.61521 5.62464 5.71287 5.74043 5.80459 5.92161 5.99211 6.02866 6.06661 6.15605 6.29366 6.29538 6.31788 6.56346 6.68116 6.72570 6.80512 6.88656 7.26488 7.70837 7.90220 7.97230 8.18949 8.47075 8.77160 8.90587 9.37775 9.99166 10.64232 11.55985 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.004480 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.047895 B = 6249.149556 C = 8627.755966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.295 5.295 4 C -0.047 4.047 5 C 0.000 4.000 6 C -0.053 4.053 7 C 0.499 3.501 8 O -0.484 6.484 9 N -0.594 5.594 10 C 0.116 3.884 11 C -0.127 4.127 12 C -0.101 4.101 13 C -0.102 4.102 14 H 0.078 0.922 15 C 0.143 3.857 16 N -0.608 5.608 17 C -0.234 4.234 18 H 0.075 0.925 19 C -0.006 4.006 20 N -0.906 5.906 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.291 1.291 25 C 0.171 3.829 26 C 0.134 3.866 27 H 0.056 0.944 28 N -0.237 5.237 29 N -0.088 5.088 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.187 0.813 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.014 0.986 46 H 0.251 0.749 47 H 0.050 0.950 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.481 0.967 14.571 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.009 4.009 3 N -0.089 5.089 4 C -0.198 4.198 5 C -0.138 4.138 6 C -0.095 4.095 7 C 0.284 3.716 8 O -0.355 6.355 9 N -0.330 5.330 10 C -0.007 4.007 11 C -0.165 4.165 12 C -0.139 4.139 13 C -0.122 4.122 14 H 0.097 0.903 15 C 0.016 3.984 16 N -0.335 5.335 17 C -0.362 4.362 18 H 0.093 0.907 19 C -0.203 4.203 20 N -0.552 5.552 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.218 1.218 25 C 0.046 3.954 26 C 0.031 3.969 27 H 0.074 0.926 28 N -0.104 5.104 29 N -0.067 5.067 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.204 0.796 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.032 0.968 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.299 0.906 12.499 18.274 hybrid contribution 1.401 -1.186 0.725 1.973 sum -11.899 -0.280 13.224 17.791 Atomic orbital electron populations 1.22066 0.92886 1.03440 1.03960 1.22037 0.96658 0.76918 1.05240 1.47344 1.31047 1.11893 1.18644 1.23250 1.00825 0.95425 1.00309 1.21228 1.01951 0.94064 0.96574 1.19984 0.95418 0.96662 0.97395 1.20245 0.81862 0.80064 0.89431 1.90858 1.68019 1.57820 1.18827 1.46689 1.31631 1.41464 1.13166 1.20768 0.97812 0.98649 0.83492 1.21112 0.96506 1.00518 0.98382 1.20475 1.00215 0.98088 0.95134 1.21312 0.96342 0.97648 0.96902 0.90341 1.21365 0.95126 0.88735 0.93139 1.44412 1.12021 1.31001 1.46027 1.19005 0.94101 1.04269 1.18854 0.90684 1.24845 0.96707 0.99276 0.99488 1.70044 1.16784 1.36786 1.31598 0.86150 0.80018 0.81944 0.78281 1.20600 1.21995 1.21816 1.21642 0.84075 0.93613 0.96021 1.20998 0.88027 0.98966 0.88957 0.92632 1.75085 1.07789 1.15683 1.11826 1.78246 1.21257 0.92833 1.14409 0.90637 0.90103 0.91862 0.88337 0.87842 0.79567 0.87653 0.87857 0.92939 0.91137 0.90957 0.91211 0.92510 0.91673 0.95160 0.96796 0.93874 0.93172 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.04 37.16 0.37 -0.77 16 2 C 0.11 0.93 7.18 -4.04 -0.03 0.90 16 3 N -0.30 -4.00 3.44 -61.26 -0.21 -4.21 16 4 C -0.05 -0.63 11.49 -17.05 -0.20 -0.82 16 5 C 0.00 0.01 5.99 -82.78 -0.50 -0.49 16 6 C -0.05 -0.74 4.62 -29.03 -0.13 -0.87 16 7 C 0.50 9.65 6.77 -10.98 -0.07 9.57 16 8 O -0.48 -12.09 12.93 5.56 0.07 -12.02 16 9 N -0.59 -10.45 3.09 -170.33 -0.53 -10.98 16 10 C 0.12 1.43 5.70 -5.80 -0.03 1.40 16 11 C -0.13 -1.48 5.83 -28.27 -0.16 -1.64 16 12 C -0.10 -1.32 5.17 -28.73 -0.15 -1.47 16 13 C -0.10 -1.82 3.05 -91.58 -0.28 -2.10 16 14 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 15 C 0.14 3.04 6.65 -3.19 -0.02 3.02 16 16 N -0.61 -16.37 3.39 -171.51 -0.58 -16.96 16 17 C -0.23 -6.84 10.25 -15.06 -0.15 -7.00 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 20 N -0.91 -28.80 10.26 55.49 0.57 -28.23 16 21 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 C 0.17 4.56 4.13 -3.53 -0.01 4.55 16 26 C 0.13 2.77 3.09 -69.30 -0.21 2.56 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 N -0.24 -4.61 11.84 33.29 0.39 -4.22 16 29 N -0.09 -1.54 12.91 60.35 0.78 -0.77 16 30 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.54 8.07 -51.93 -0.42 0.12 16 35 H 0.19 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.11 1.16 7.38 -51.93 -0.38 0.78 16 37 H 0.10 1.15 7.91 -51.93 -0.41 0.74 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.71 6.07 -51.93 -0.32 0.39 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.90 6.99 -51.93 -0.36 0.54 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 46 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 47 H 0.05 1.55 7.37 -51.93 -0.38 1.16 16 48 H 0.08 2.27 4.71 -51.93 -0.24 2.03 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -40.15 373.08 -8.07 -48.22 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.48 Total: -1.16 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -1.68 Total: 6.56 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: 0.42 Total: -65.35 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.07 Total: -12.02 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -40.15 -8.07 -48.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050102031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.278 kcal (2) G-P(sol) polarization free energy of solvation -40.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds