Wall clock time and date at job start Tue Mar 31 2020 18:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47147 * 2 1 4 4 N 1.28514 * 124.44395 * 269.97764 * 3 2 1 5 5 C 1.31142 * 109.05733 * 179.73118 * 4 3 2 6 6 C 1.50697 * 127.11241 * 180.28965 * 5 4 3 7 7 C 1.40923 * 105.77263 * 0.43336 * 5 4 3 8 8 C 1.47804 * 127.23147 * 179.84159 * 7 5 4 9 9 O 1.21557 * 120.00128 * 6.10616 * 8 7 5 10 10 N 1.34784 * 119.99664 * 186.11677 * 8 7 5 11 11 C 1.44501 * 116.65206 * 355.00141 * 10 8 7 12 12 C 1.51612 * 112.72777 * 154.40650 * 11 10 8 13 13 C 1.51326 * 112.05960 * 42.35635 * 12 11 10 14 14 C 1.50773 * 113.47965 * 304.73550 * 13 12 11 15 15 H 1.09000 * 108.56206 * 169.41255 * 14 13 12 16 16 C 1.53899 * 110.59509 * 289.06525 * 14 13 12 17 17 N 1.46825 * 107.49768 * 140.15580 * 16 14 13 18 18 C 1.36934 * 125.37504 * 181.00338 * 17 16 14 19 19 H 1.07998 * 120.00455 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00173 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99954 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00483 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47462 * 179.97438 * 22 20 18 24 24 H 1.48508 * 109.46925 * 300.00122 * 22 20 18 25 25 H 1.48494 * 109.47088 * 59.99714 * 22 20 18 26 26 C 1.46904 * 109.24740 * 1.26805 * 17 16 14 27 27 C 1.44107 * 116.65244 * 174.97870 * 10 8 7 28 28 H 1.09008 * 109.35566 * 74.45696 * 27 10 8 29 29 N 1.28594 * 124.44066 * 89.99726 * 3 2 1 30 30 H 1.09001 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47239 * 300.00265 * 1 2 3 32 32 H 1.09004 * 109.47133 * 60.00111 * 1 2 3 33 33 H 1.09002 * 109.47249 * 240.00184 * 2 1 3 34 34 H 1.08998 * 109.46700 * 119.99778 * 2 1 3 35 35 H 1.09005 * 109.47101 * 270.17118 * 6 5 4 36 36 H 1.09000 * 109.47186 * 30.16918 * 6 5 4 37 37 H 1.09001 * 109.46989 * 150.17195 * 6 5 4 38 38 H 1.09004 * 108.83060 * 275.24085 * 11 10 8 39 39 H 1.08996 * 108.83863 * 33.67039 * 11 10 8 40 40 H 1.08999 * 108.96886 * 163.02117 * 12 11 10 41 41 H 1.09001 * 108.95891 * 281.69737 * 12 11 10 42 42 H 1.09003 * 108.67885 * 183.70730 * 13 12 11 43 43 H 1.08999 * 108.68250 * 65.76914 * 13 12 11 44 44 H 1.09005 * 109.84239 * 20.67472 * 16 14 13 45 45 H 1.08995 * 109.84961 * 259.64399 * 16 14 13 46 46 H 0.96998 * 119.99942 * 180.02562 * 21 20 18 47 47 H 1.08996 * 110.08972 * 101.07922 * 26 17 16 48 48 H 1.09007 * 110.08352 * 222.65149 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2610 2.0664 -1.0598 5 6 2.6769 3.2605 -0.7119 6 6 3.0680 4.3902 -1.6293 7 6 2.6857 3.2675 0.6973 8 6 3.0800 4.3826 1.5836 9 8 3.3405 5.4718 1.1109 10 7 3.1510 4.1918 2.9160 11 6 2.7199 2.9041 3.4102 12 6 3.3709 2.5349 4.7287 13 6 3.4280 3.7082 5.6826 14 6 4.1127 4.9203 5.1037 15 1 3.9452 5.7655 5.7713 16 6 5.6264 4.6756 4.9716 17 7 6.0602 5.2683 3.7004 18 6 7.3382 5.2432 3.2092 19 1 8.1231 4.7583 3.7706 20 6 7.6251 5.8418 1.9901 21 7 6.6686 6.4332 1.3060 22 14 9.3685 5.8082 1.3203 23 1 9.4101 6.5104 0.0125 24 1 10.2794 6.4873 2.2766 25 1 9.8021 4.3995 1.1391 26 6 4.9081 5.8981 3.0416 27 6 3.6494 5.2926 3.7011 28 1 2.8832 6.0652 3.7673 29 7 2.2607 2.0669 1.0605 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.1323 4.3234 -1.8548 36 1 2.4956 4.3218 -2.5544 37 1 2.8589 5.3427 -1.1422 38 1 1.6384 2.9231 3.5449 39 1 2.9685 2.1424 2.6713 40 1 2.8011 1.7293 5.1918 41 1 4.3851 2.1846 4.5370 42 1 3.9624 3.4015 6.5817 43 1 2.4102 3.9818 5.9609 44 1 5.8291 3.6045 4.9688 45 1 6.1518 5.1509 5.7999 46 1 6.8690 6.8511 0.4539 47 1 4.9322 6.9769 3.1958 48 1 4.9166 5.6716 1.9753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050214353.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:01 Heat of formation + Delta-G solvation = 129.728903 kcal Electronic energy + Delta-G solvation = -31025.004685 eV Core-core repulsion = 27119.613742 eV Total energy + Delta-G solvation = -3905.390943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.49738 -40.26298 -37.53949 -35.38616 -35.06426 -33.38020 -32.48412 -31.98563 -31.25040 -29.50835 -27.97435 -27.14171 -25.54607 -25.01704 -23.77906 -22.58496 -22.00015 -21.00165 -20.61924 -19.42392 -17.84276 -17.22095 -16.94635 -16.68709 -16.22029 -15.74838 -14.98121 -14.76511 -14.42028 -14.21693 -14.01214 -13.86111 -13.62542 -13.53615 -13.31148 -12.86143 -12.70518 -12.45723 -12.31581 -12.19029 -12.09518 -11.72631 -11.67904 -11.53881 -11.30549 -11.04919 -10.94018 -10.76970 -10.65063 -10.31363 -10.21747 -10.14557 -9.98067 -9.83899 -9.80725 -9.51565 -9.03782 -8.91747 -8.37647 -7.78433 -6.62903 -5.45855 -2.88414 1.56991 2.17065 2.20261 3.46405 3.48634 3.52570 3.54486 3.79944 4.03056 4.54359 4.59125 4.61565 4.81317 4.90667 5.01546 5.09518 5.11240 5.22426 5.27377 5.36307 5.40381 5.56468 5.64485 5.65318 5.71343 5.81737 5.86660 5.89802 6.01225 6.03879 6.10387 6.14679 6.17794 6.19588 6.34173 6.37152 6.54323 6.63340 6.71535 6.80132 6.82140 6.89949 7.25032 7.66468 7.80249 7.87272 8.22008 8.33247 8.62882 8.83009 9.39109 10.00640 10.64614 11.56200 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.004999 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.637633 B = 5599.906226 C = 7063.964260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 N -0.154 5.154 4 N -0.298 5.298 5 C 0.064 3.936 6 C -0.069 4.069 7 C -0.030 4.030 8 C 0.588 3.412 9 O -0.487 6.487 10 N -0.570 5.570 11 C 0.104 3.896 12 C -0.126 4.126 13 C -0.102 4.102 14 C -0.099 4.099 15 H 0.077 0.923 16 C 0.141 3.859 17 N -0.602 5.602 18 C -0.232 4.232 19 H 0.073 0.927 20 C -0.005 4.005 21 N -0.905 5.905 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.287 1.287 25 H -0.288 1.288 26 C 0.136 3.864 27 C 0.130 3.870 28 H 0.060 0.940 29 N -0.254 5.254 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.021 0.979 45 H 0.019 0.981 46 H 0.252 0.748 47 H 0.022 0.978 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.487 -12.666 0.720 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 N -0.055 5.055 4 N -0.139 5.139 5 C -0.100 4.100 6 C -0.128 4.128 7 C -0.192 4.192 8 C 0.372 3.628 9 O -0.359 6.359 10 N -0.302 5.302 11 C -0.020 4.020 12 C -0.164 4.164 13 C -0.140 4.140 14 C -0.119 4.119 15 H 0.095 0.905 16 C 0.015 3.985 17 N -0.329 5.329 18 C -0.361 4.361 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.552 5.552 22 Si 0.737 3.263 23 H -0.216 1.216 24 H -0.213 1.213 25 H -0.215 1.215 26 C 0.011 3.989 27 C 0.026 3.974 28 H 0.078 0.922 29 N -0.101 5.101 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.036 0.964 46 H 0.063 0.937 47 H 0.040 0.960 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.685 -13.268 0.336 19.793 hybrid contribution 1.260 0.562 -0.034 1.380 sum -13.425 -12.705 0.301 18.486 Atomic orbital electron populations 1.22176 0.93191 1.03687 1.03749 1.21977 0.95941 0.74711 1.05787 1.48206 1.44338 1.13312 0.99685 1.73872 1.19343 1.05228 1.15464 1.23251 1.00293 0.93589 0.92839 1.20251 1.02144 0.93987 0.96377 1.23230 1.07978 0.93423 0.94598 1.16841 0.78683 0.85756 0.81554 1.90821 1.46467 1.23797 1.74855 1.46408 1.63169 1.14775 1.05887 1.21329 0.97558 0.85771 0.97349 1.21113 1.01910 0.98139 0.95194 1.20550 1.00186 0.94969 0.98316 1.21264 0.97092 0.97956 0.95557 0.90459 1.21277 0.90807 0.96262 0.90144 1.44330 1.05940 1.64585 1.18000 1.18916 0.84162 1.31069 1.01945 0.90908 1.24808 0.97416 1.00473 0.97547 1.69904 1.29653 1.40674 1.14928 0.86291 0.84389 0.77353 0.78234 1.21553 1.21341 1.21454 1.22475 0.80336 0.93627 1.02429 1.21287 0.98504 0.86533 0.91028 0.92172 1.74499 1.16492 1.04649 1.14502 0.89726 0.91347 0.91429 0.87455 0.87373 0.89881 0.91218 0.88180 0.93292 0.87626 0.91187 0.91425 0.91762 0.92584 0.96126 0.96363 0.93672 0.96000 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.24 37.16 0.38 -0.73 16 2 C 0.14 1.11 7.24 -4.04 -0.03 1.08 16 3 N -0.15 -2.12 3.94 -10.61 -0.04 -2.16 16 4 N -0.30 -4.66 12.01 33.92 0.41 -4.25 16 5 C 0.06 1.11 7.39 -81.87 -0.61 0.50 16 6 C -0.07 -1.08 10.06 36.00 0.36 -0.72 16 7 C -0.03 -0.55 6.79 -82.68 -0.56 -1.11 16 8 C 0.59 12.34 6.95 -12.34 -0.09 12.26 16 9 O -0.49 -11.58 12.24 5.32 0.07 -11.52 16 10 N -0.57 -11.07 3.09 -170.87 -0.53 -11.60 16 11 C 0.10 1.63 5.32 -5.81 -0.03 1.60 16 12 C -0.13 -1.76 5.84 -28.28 -0.17 -1.93 16 13 C -0.10 -1.45 5.10 -28.69 -0.15 -1.59 16 14 C -0.10 -1.79 2.96 -91.61 -0.27 -2.06 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 16 C 0.14 3.07 6.74 -3.40 -0.02 3.05 16 17 N -0.60 -16.20 3.39 -171.20 -0.58 -16.78 16 18 C -0.23 -6.78 10.25 -15.06 -0.15 -6.93 16 19 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 21 N -0.90 -27.58 10.18 55.49 0.56 -27.02 16 22 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.14 3.55 4.67 -3.05 -0.01 3.54 16 27 C 0.13 2.70 3.21 -68.78 -0.22 2.48 16 28 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 29 N -0.25 -3.99 8.39 33.42 0.28 -3.71 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.70 6.67 -51.93 -0.35 1.36 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.11 1.72 4.61 -63.86 -0.29 1.42 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.07 7.11 -51.93 -0.37 0.70 16 42 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.02 0.45 6.71 -51.93 -0.35 0.10 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.14 4.04 3.02 -51.94 -0.16 3.89 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -35.04 368.71 -8.36 -43.40 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.40 Total: 1.00 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -1.66 Total: 9.17 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: 0.10 Total: -65.52 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.07 Total: -11.52 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.04 -8.36 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050214353.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.128 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds