Wall clock time and date at job start Tue Mar 31 2020 18:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35311 * 125.87002 * 2 1 4 4 C 1.35343 * 106.17598 * 180.18222 * 3 2 1 5 5 C 1.50698 * 126.75123 * 179.85070 * 4 3 2 6 6 C 1.52993 * 109.47194 * 124.71777 * 5 4 3 7 7 C 1.50707 * 109.47388 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99643 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99894 * 180.27641 * 7 6 5 10 10 C 1.44500 * 116.63216 * 353.95476 * 9 7 6 11 11 C 1.51627 * 112.65317 * 154.60817 * 10 9 7 12 12 C 1.51326 * 111.98199 * 42.75531 * 11 10 9 13 13 C 1.50701 * 113.54955 * 304.61350 * 12 11 10 14 14 H 1.08998 * 109.33952 * 169.06354 * 13 12 11 15 15 C 1.54189 * 110.50789 * 289.39259 * 13 12 11 16 16 N 1.46929 * 106.26021 * 151.09357 * 15 13 12 17 17 C 1.36944 * 125.37318 * 162.11369 * 16 15 13 18 18 H 1.07998 * 119.99889 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99783 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99886 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99770 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47014 * 90.00111 * 21 19 17 23 23 H 1.48496 * 109.46975 * 210.00352 * 21 19 17 24 24 H 1.48498 * 109.46898 * 329.99931 * 21 19 17 25 25 C 1.46808 * 109.25209 * 342.14797 * 16 15 13 26 26 C 1.44107 * 116.62579 * 173.70274 * 9 7 6 27 27 H 1.09001 * 109.10885 * 73.86531 * 26 9 7 28 28 N 1.33776 * 106.49682 * 359.59651 * 4 3 2 29 29 N 1.28635 * 108.88540 * 0.25649 * 28 4 3 30 30 H 1.09000 * 109.47338 * 270.29466 * 1 2 3 31 31 H 1.09000 * 109.47115 * 30.29503 * 1 2 3 32 32 H 1.09004 * 109.47623 * 150.29625 * 1 2 3 33 33 H 1.08004 * 126.90888 * 0.03937 * 3 2 1 34 34 H 1.09003 * 109.47452 * 4.71497 * 5 4 3 35 35 H 1.09001 * 109.47192 * 244.71582 * 5 4 3 36 36 H 1.09003 * 109.47585 * 59.99848 * 6 5 4 37 37 H 1.09000 * 109.47331 * 299.99684 * 6 5 4 38 38 H 1.09001 * 108.84610 * 275.42264 * 10 9 7 39 39 H 1.09001 * 108.84970 * 33.89174 * 10 9 7 40 40 H 1.09007 * 108.98297 * 163.40331 * 11 10 9 41 41 H 1.09001 * 108.97925 * 282.19813 * 11 10 9 42 42 H 1.08997 * 108.66967 * 65.67010 * 12 11 10 43 43 H 1.09001 * 108.67024 * 183.69397 * 12 11 10 44 44 H 1.08999 * 110.09651 * 270.29130 * 15 13 12 45 45 H 1.08997 * 110.09257 * 31.83675 * 15 13 12 46 46 H 0.97008 * 119.99390 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.84050 * 120.40275 * 25 16 15 48 48 H 1.09003 * 109.84633 * 241.41273 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5321 0.6404 -0.0041 5 6 4.7879 1.4734 -0.0090 6 6 5.6711 1.0713 1.1739 7 6 6.9273 1.9039 1.1687 8 8 7.0994 2.7365 0.3037 9 7 7.8622 1.7190 2.1217 10 6 7.5283 0.8019 3.1874 11 6 8.7541 0.1865 3.8338 12 6 9.8473 1.2077 4.0616 13 6 10.2547 1.9429 2.8108 14 1 10.8942 2.7840 3.0785 15 6 11.0208 1.0039 1.8575 16 7 10.7646 1.4992 0.4982 17 6 11.5061 1.1905 -0.6110 18 1 12.3579 0.5321 -0.5250 19 6 11.1623 1.7230 -1.8459 20 7 10.1240 2.5250 -1.9507 21 14 12.1735 1.3014 -3.3590 22 1 11.6144 0.0869 -4.0053 23 1 12.1293 2.4362 -4.3158 24 1 13.5805 1.0460 -2.9587 25 6 9.5886 2.3778 0.5168 26 6 9.0935 2.4520 1.9694 27 1 8.9169 3.5003 2.2104 28 7 3.4575 -0.6953 0.0026 29 7 2.2191 -1.0431 0.0049 30 1 -0.3634 0.0053 1.0276 31 1 -0.3633 0.8873 -0.5184 32 1 -0.3634 -0.8926 -0.5092 33 1 1.9381 2.1281 0.0006 34 1 4.5250 2.5278 0.0758 35 1 5.3301 1.3079 -0.9400 36 1 5.9342 0.0169 1.0891 37 1 5.1290 1.2368 2.1049 38 1 6.9607 1.3378 3.9481 39 1 6.9069 0.0030 2.7827 40 1 8.4693 -0.2477 4.7922 41 1 9.1373 -0.6029 3.1871 42 1 9.4987 1.9343 4.7955 43 1 10.7223 0.6981 4.4651 44 1 12.0884 1.0400 2.0742 45 1 10.6522 -0.0167 1.9609 46 1 9.8840 2.8974 -2.8137 47 1 9.8643 3.3723 0.1658 48 1 8.8067 1.9631 -0.1194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050215029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:15 Heat of formation + Delta-G solvation = 103.739007 kcal Electronic energy + Delta-G solvation = -29662.951733 eV Core-core repulsion = 25756.433784 eV Total energy + Delta-G solvation = -3906.517949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.33995 -40.44247 -37.74881 -35.36314 -35.21011 -33.45160 -33.07569 -31.96389 -30.35713 -29.43203 -28.14893 -27.15191 -25.53931 -24.99430 -23.73900 -22.19505 -22.02188 -21.21506 -20.32181 -19.12605 -17.74567 -17.42075 -16.91376 -16.75610 -16.31134 -15.74822 -15.38634 -15.01759 -14.48970 -14.47332 -14.19035 -13.97460 -13.77290 -13.60286 -13.45339 -13.39743 -12.73288 -12.64204 -12.46037 -12.12305 -11.98336 -11.74631 -11.55360 -11.25885 -11.18478 -10.92227 -10.88724 -10.72258 -10.61129 -10.52304 -10.21082 -10.16736 -10.10744 -9.91792 -9.80041 -9.53027 -9.24267 -8.88977 -8.38256 -7.85009 -6.60789 -5.49683 -2.85970 1.45412 2.18373 2.46992 3.21811 3.50770 3.54818 3.57404 3.58815 4.12524 4.37964 4.57888 4.63995 4.68918 4.86379 4.91094 4.96145 4.98866 5.08117 5.23431 5.27792 5.33471 5.38369 5.48352 5.59746 5.63638 5.69057 5.77848 5.82875 5.95447 6.01644 6.03369 6.07739 6.16347 6.23556 6.31018 6.32680 6.36346 6.40566 6.55171 6.69097 6.81020 6.89841 7.25168 7.71618 7.89605 7.96363 8.19303 8.42268 8.48653 8.83893 9.40564 10.01524 10.66395 11.58607 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.003478 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.527749 B = 8047.934960 C = 9808.173093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.299 5.299 3 C -0.053 4.053 4 C -0.008 4.008 5 C -0.019 4.019 6 C -0.130 4.130 7 C 0.498 3.502 8 O -0.506 6.506 9 N -0.591 5.591 10 C 0.116 3.884 11 C -0.128 4.128 12 C -0.101 4.101 13 C -0.103 4.103 14 H 0.078 0.922 15 C 0.142 3.858 16 N -0.607 5.607 17 C -0.234 4.234 18 H 0.075 0.925 19 C -0.006 4.006 20 N -0.907 5.907 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.171 3.829 26 C 0.132 3.868 27 H 0.055 0.945 28 N -0.262 5.262 29 N -0.091 5.091 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.191 0.809 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.031 0.969 45 H 0.015 0.985 46 H 0.251 0.749 47 H 0.051 0.949 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.851 -1.882 12.228 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.093 5.093 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.059 4.059 6 C -0.171 4.171 7 C 0.285 3.715 8 O -0.381 6.381 9 N -0.326 5.326 10 C -0.007 4.007 11 C -0.166 4.166 12 C -0.139 4.139 13 C -0.122 4.122 14 H 0.097 0.903 15 C 0.016 3.984 16 N -0.334 5.334 17 C -0.362 4.362 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.554 5.554 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.209 1.209 25 C 0.046 3.954 26 C 0.028 3.972 27 H 0.073 0.927 28 N -0.129 5.129 29 N -0.070 5.070 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.208 0.792 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.049 0.951 45 H 0.032 0.968 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.725 -2.901 11.569 22.201 hybrid contribution 0.254 0.879 -0.719 1.163 sum -18.471 -2.023 10.850 21.517 Atomic orbital electron populations 1.22223 0.73002 1.05809 1.04813 1.47221 1.09258 1.05076 1.47756 1.23413 0.90899 0.94655 1.11333 1.22152 0.95472 0.91388 1.05612 1.19660 0.89167 0.97162 0.99893 1.21625 0.94439 1.01462 0.99566 1.20561 0.84925 0.84457 0.81521 1.90801 1.77702 1.34127 1.35463 1.46728 1.15928 1.45014 1.24900 1.20769 0.97366 0.92722 0.89868 1.21119 0.95511 0.99194 1.00781 1.20476 0.98369 0.97908 0.97128 1.21311 0.96843 0.99332 0.94737 0.90347 1.21371 0.96378 0.94747 0.85929 1.44398 1.32083 1.54721 1.02246 1.18964 1.07600 1.24393 0.85252 0.90752 1.24833 0.98239 0.99765 0.97472 1.70022 1.27141 1.35013 1.23195 0.86202 0.79376 0.77312 0.83345 1.21725 1.21759 1.20866 1.21661 0.89484 0.95802 0.88437 1.21036 0.82829 0.93253 1.00058 0.92666 1.75089 1.09106 1.12259 1.16416 1.78311 0.96598 1.12162 1.19928 0.89222 0.88397 0.88168 0.79230 0.89351 0.88739 0.88399 0.89757 0.93109 0.90848 0.90985 0.91126 0.92598 0.91655 0.95128 0.96753 0.93813 0.93116 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 11.39 59.85 0.68 1.01 16 2 N -0.30 -2.89 3.74 -68.06 -0.25 -3.15 16 3 C -0.05 -0.51 11.54 -17.05 -0.20 -0.71 16 4 C -0.01 -0.11 6.50 -82.78 -0.54 -0.65 16 5 C -0.02 -0.27 5.08 -27.89 -0.14 -0.41 16 6 C -0.13 -1.86 4.03 -27.88 -0.11 -1.97 16 7 C 0.50 9.23 6.77 -10.98 -0.07 9.16 16 8 O -0.51 -11.56 13.30 5.55 0.07 -11.49 16 9 N -0.59 -10.41 3.09 -170.33 -0.53 -10.94 16 10 C 0.12 1.54 5.70 -5.80 -0.03 1.51 16 11 C -0.13 -1.60 5.83 -28.27 -0.16 -1.77 16 12 C -0.10 -1.35 5.17 -28.73 -0.15 -1.50 16 13 C -0.10 -1.83 3.05 -91.58 -0.28 -2.11 16 14 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 15 C 0.14 3.07 6.65 -3.19 -0.02 3.05 16 16 N -0.61 -16.44 3.39 -171.51 -0.58 -17.02 16 17 C -0.23 -6.87 10.26 -15.06 -0.15 -7.03 16 18 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 20 N -0.91 -28.38 10.26 55.49 0.57 -27.81 16 21 Si 0.91 23.25 29.55 -169.99 -5.02 18.22 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.17 4.49 4.13 -3.54 -0.01 4.47 16 26 C 0.13 2.68 3.09 -69.29 -0.21 2.47 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 N -0.26 -4.05 12.40 33.29 0.41 -3.63 16 29 N -0.09 -1.24 13.17 60.35 0.79 -0.44 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.19 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.09 1.57 8.10 -51.93 -0.42 1.15 16 36 H 0.10 1.45 7.38 -51.93 -0.38 1.06 16 37 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.90 6.07 -51.93 -0.32 0.58 16 40 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.07 1.00 6.99 -51.93 -0.36 0.63 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.01 0.32 6.69 -51.93 -0.35 -0.03 16 46 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.05 1.52 7.37 -51.93 -0.38 1.14 16 48 H 0.08 2.28 4.70 -51.93 -0.24 2.03 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -38.38 373.79 -7.89 -46.27 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.48 Total: -0.89 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.51 Total: 5.24 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.41 Total: -62.99 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.38 -7.89 -46.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050215029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.013 kcal (2) G-P(sol) polarization free energy of solvation -38.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds