Wall clock time and date at job start Tue Mar 31 2020 18:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35311 * 125.87002 * 2 1 4 4 C 1.35343 * 106.17598 * 180.18222 * 3 2 1 5 5 C 1.50698 * 126.75123 * 179.85070 * 4 3 2 6 6 C 1.52993 * 109.47194 * 124.71777 * 5 4 3 7 7 C 1.50707 * 109.47388 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99643 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99894 * 180.27641 * 7 6 5 10 10 C 1.44500 * 116.63216 * 353.95476 * 9 7 6 11 11 C 1.51627 * 112.65317 * 154.60817 * 10 9 7 12 12 C 1.51326 * 111.98199 * 42.75531 * 11 10 9 13 13 C 1.50701 * 113.54955 * 304.61350 * 12 11 10 14 14 H 1.08998 * 109.33952 * 169.06354 * 13 12 11 15 15 C 1.54189 * 110.50789 * 289.39259 * 13 12 11 16 16 N 1.46929 * 106.26021 * 151.09357 * 15 13 12 17 17 C 1.36944 * 125.37318 * 162.11369 * 16 15 13 18 18 H 1.07998 * 119.99889 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99783 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99886 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99770 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47014 * 90.00111 * 21 19 17 23 23 H 1.48496 * 109.46975 * 210.00352 * 21 19 17 24 24 H 1.48498 * 109.46898 * 329.99931 * 21 19 17 25 25 C 1.46808 * 109.25209 * 342.14797 * 16 15 13 26 26 C 1.44107 * 116.62579 * 173.70274 * 9 7 6 27 27 H 1.09001 * 109.10885 * 73.86531 * 26 9 7 28 28 N 1.33776 * 106.49682 * 359.59651 * 4 3 2 29 29 N 1.28635 * 108.88540 * 0.25649 * 28 4 3 30 30 H 1.09000 * 109.47338 * 270.29466 * 1 2 3 31 31 H 1.09000 * 109.47115 * 30.29503 * 1 2 3 32 32 H 1.09004 * 109.47623 * 150.29625 * 1 2 3 33 33 H 1.08004 * 126.90888 * 0.03937 * 3 2 1 34 34 H 1.09003 * 109.47452 * 4.71497 * 5 4 3 35 35 H 1.09001 * 109.47192 * 244.71582 * 5 4 3 36 36 H 1.09003 * 109.47585 * 59.99848 * 6 5 4 37 37 H 1.09000 * 109.47331 * 299.99684 * 6 5 4 38 38 H 1.09001 * 108.84610 * 275.42264 * 10 9 7 39 39 H 1.09001 * 108.84970 * 33.89174 * 10 9 7 40 40 H 1.09007 * 108.98297 * 163.40331 * 11 10 9 41 41 H 1.09001 * 108.97925 * 282.19813 * 11 10 9 42 42 H 1.08997 * 108.66967 * 65.67010 * 12 11 10 43 43 H 1.09001 * 108.67024 * 183.69397 * 12 11 10 44 44 H 1.08999 * 110.09651 * 270.29130 * 15 13 12 45 45 H 1.08997 * 110.09257 * 31.83675 * 15 13 12 46 46 H 0.97008 * 119.99390 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.84050 * 120.40275 * 25 16 15 48 48 H 1.09003 * 109.84633 * 241.41273 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5321 0.6404 -0.0041 5 6 4.7879 1.4734 -0.0090 6 6 5.6711 1.0713 1.1739 7 6 6.9273 1.9039 1.1687 8 8 7.0994 2.7365 0.3037 9 7 7.8622 1.7190 2.1217 10 6 7.5283 0.8019 3.1874 11 6 8.7541 0.1865 3.8338 12 6 9.8473 1.2077 4.0616 13 6 10.2547 1.9429 2.8108 14 1 10.8942 2.7840 3.0785 15 6 11.0208 1.0039 1.8575 16 7 10.7646 1.4992 0.4982 17 6 11.5061 1.1905 -0.6110 18 1 12.3579 0.5321 -0.5250 19 6 11.1623 1.7230 -1.8459 20 7 10.1240 2.5250 -1.9507 21 14 12.1735 1.3014 -3.3590 22 1 11.6144 0.0869 -4.0053 23 1 12.1293 2.4362 -4.3158 24 1 13.5805 1.0460 -2.9587 25 6 9.5886 2.3778 0.5168 26 6 9.0935 2.4520 1.9694 27 1 8.9169 3.5003 2.2104 28 7 3.4575 -0.6953 0.0026 29 7 2.2191 -1.0431 0.0049 30 1 -0.3634 0.0053 1.0276 31 1 -0.3633 0.8873 -0.5184 32 1 -0.3634 -0.8926 -0.5092 33 1 1.9381 2.1281 0.0006 34 1 4.5250 2.5278 0.0758 35 1 5.3301 1.3079 -0.9400 36 1 5.9342 0.0169 1.0891 37 1 5.1290 1.2368 2.1049 38 1 6.9607 1.3378 3.9481 39 1 6.9069 0.0030 2.7827 40 1 8.4693 -0.2477 4.7922 41 1 9.1373 -0.6029 3.1871 42 1 9.4987 1.9343 4.7955 43 1 10.7223 0.6981 4.4651 44 1 12.0884 1.0400 2.0742 45 1 10.6522 -0.0167 1.9609 46 1 9.8840 2.8974 -2.8137 47 1 9.8643 3.3723 0.1658 48 1 8.8067 1.9631 -0.1194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050215029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:14 Heat of formation + Delta-G solvation = 75.730336 kcal Electronic energy + Delta-G solvation = -29664.166280 eV Core-core repulsion = 25756.433784 eV Total energy + Delta-G solvation = -3907.732496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.19765 -41.91619 -39.27932 -36.99861 -36.09927 -34.71527 -34.39649 -33.70882 -31.72425 -30.93545 -28.93211 -28.56341 -27.32819 -26.30129 -25.24190 -23.38561 -22.98829 -22.64831 -21.75610 -20.53995 -19.27211 -18.73787 -18.23914 -17.68427 -17.51697 -17.19587 -17.03088 -16.35036 -16.02618 -15.70419 -15.60315 -15.22752 -15.09052 -14.85043 -14.26923 -14.16436 -14.14092 -13.97177 -13.72126 -13.49448 -13.43402 -13.13368 -12.99690 -12.91252 -12.67145 -12.57643 -12.35176 -12.23956 -12.08412 -11.90016 -11.75401 -11.63364 -11.52612 -11.40585 -11.30465 -10.96595 -10.74542 -10.39144 -10.09194 -9.34172 -8.81865 -7.77289 -5.17047 0.66651 1.41185 1.45012 1.48515 1.53478 1.60945 1.77727 2.24333 2.49930 3.32979 3.36149 3.57168 3.72216 3.75573 3.84771 3.88569 4.05393 4.05973 4.09695 4.14012 4.18077 4.26506 4.37632 4.42325 4.52328 4.64773 4.65908 4.67564 4.73619 4.75000 4.79435 4.88033 4.94902 5.01587 5.05803 5.15901 5.18899 5.21948 5.26271 5.40921 5.45917 5.50135 5.56877 5.72691 5.86078 6.10318 6.27612 6.56014 7.12113 7.41226 7.52571 7.83719 8.46132 9.28663 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.003478 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.527749 B = 8047.934960 C = 9808.173093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.288 5.288 3 C -0.028 4.028 4 C -0.035 4.035 5 C -0.011 4.011 6 C -0.113 4.113 7 C 0.488 3.512 8 O -0.561 6.561 9 N -0.591 5.591 10 C 0.104 3.896 11 C -0.126 4.126 12 C -0.097 4.097 13 C -0.089 4.089 14 H 0.083 0.917 15 C 0.136 3.864 16 N -0.631 5.631 17 C -0.248 4.248 18 H 0.082 0.918 19 C -0.069 4.069 20 N -0.940 5.940 21 Si 0.977 3.023 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.265 1.265 25 C 0.185 3.815 26 C 0.144 3.856 27 H 0.051 0.949 28 N -0.307 5.307 29 N -0.121 5.121 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.234 0.766 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.049 0.951 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.020 0.980 46 H 0.242 0.758 47 H -0.004 1.004 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.577 -2.583 15.225 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.082 5.082 3 C -0.179 4.179 4 C -0.174 4.174 5 C -0.050 4.050 6 C -0.153 4.153 7 C 0.277 3.723 8 O -0.440 6.440 9 N -0.324 5.324 10 C -0.017 4.017 11 C -0.164 4.164 12 C -0.134 4.134 13 C -0.109 4.109 14 H 0.102 0.898 15 C 0.011 3.989 16 N -0.358 5.358 17 C -0.377 4.377 18 H 0.100 0.900 19 C -0.262 4.262 20 N -0.588 5.588 21 Si 0.805 3.195 22 H -0.215 1.215 23 H -0.221 1.221 24 H -0.189 1.189 25 C 0.060 3.940 26 C 0.039 3.961 27 H 0.069 0.931 28 N -0.173 5.173 29 N -0.101 5.101 30 H 0.129 0.871 31 H 0.148 0.852 32 H 0.123 0.877 33 H 0.251 0.749 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.051 0.949 47 H 0.014 0.986 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.463 -3.677 14.640 25.428 hybrid contribution 0.715 1.105 -1.646 2.108 sum -19.747 -2.572 12.994 23.778 Atomic orbital electron populations 1.22752 0.69636 1.07694 1.06839 1.47678 1.11056 1.04160 1.45304 1.23965 0.89548 0.96282 1.08126 1.22066 0.96354 0.90920 1.08038 1.19463 0.89511 0.98229 0.97835 1.21543 0.92551 0.99766 1.01465 1.21393 0.86158 0.84055 0.80693 1.90780 1.79018 1.36684 1.37500 1.46825 1.14403 1.45231 1.25981 1.21192 0.98555 0.92649 0.89315 1.21181 0.94618 0.98219 1.02381 1.20498 0.99677 0.98513 0.94756 1.21312 0.94945 0.99085 0.95529 0.89831 1.21613 0.97413 0.95703 0.84185 1.44743 1.32175 1.54908 1.03996 1.19412 1.07862 1.23960 0.86457 0.90047 1.25758 0.99630 1.00114 1.00741 1.70329 1.29025 1.36391 1.23053 0.85099 0.78568 0.76630 0.79157 1.21519 1.22112 1.18922 1.21219 0.88381 0.92428 0.92000 1.20614 0.84922 0.94051 0.96503 0.93135 1.75012 1.10509 1.13710 1.18054 1.78211 0.96483 1.13703 1.21666 0.87062 0.85200 0.87722 0.74927 0.88060 0.92932 0.89043 0.86011 0.89529 0.89810 0.86619 0.93262 0.89857 0.89715 0.94487 0.96187 0.94888 0.98627 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.39 127.77 1.46 1.77 16 2 N -0.29 -4.92 3.74 -369.23 -1.38 -6.30 16 3 C -0.03 -0.47 11.54 83.49 0.96 0.49 16 4 C -0.03 -0.90 6.50 41.59 0.27 -0.63 16 5 C -0.01 -0.31 5.08 29.84 0.15 -0.16 16 6 C -0.11 -3.23 4.03 29.85 0.12 -3.11 16 7 C 0.49 18.69 6.77 87.66 0.59 19.28 16 8 O -0.56 -27.59 13.30 -3.04 -0.04 -27.63 16 9 N -0.59 -20.61 3.09 -811.20 -2.51 -23.12 16 10 C 0.10 2.44 5.70 86.30 0.49 2.93 16 11 C -0.13 -2.66 5.83 29.60 0.17 -2.48 16 12 C -0.10 -2.21 5.17 29.30 0.15 -2.06 16 13 C -0.09 -3.07 3.05 -11.41 -0.03 -3.10 16 14 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 15 C 0.14 5.86 6.65 86.70 0.58 6.44 16 16 N -0.63 -35.58 3.39 -696.54 -2.36 -37.94 16 17 C -0.25 -15.10 10.26 84.03 0.86 -14.24 16 18 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 19 C -0.07 -4.29 5.48 84.86 0.47 -3.82 16 20 N -0.94 -62.76 10.26 21.65 0.22 -62.54 16 21 Si 0.98 49.62 29.55 68.60 2.03 51.65 16 22 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 24 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 25 C 0.18 10.38 4.13 86.54 0.36 10.74 16 26 C 0.14 5.98 3.09 45.38 0.14 6.12 16 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 28 N -0.31 -9.59 12.40 -48.60 -0.60 -10.20 16 29 N -0.12 -3.25 13.17 37.02 0.49 -2.76 16 30 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.41 16 33 H 0.23 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.10 2.58 8.08 -2.39 -0.02 2.56 16 35 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 36 H 0.09 2.75 7.38 -2.39 -0.02 2.73 16 37 H 0.12 2.53 7.92 -2.39 -0.02 2.51 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.82 6.07 -2.39 -0.01 1.80 16 40 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.05 1.26 6.99 -2.39 -0.02 1.24 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.02 0.86 6.69 -2.39 -0.02 0.85 16 46 H 0.24 15.84 8.31 -92.70 -0.77 15.07 16 47 H 0.00 -0.29 7.37 -2.38 -0.02 -0.31 16 48 H 0.04 2.55 4.70 -2.39 -0.01 2.54 16 Total: -1.00 -93.96 373.79 3.54 -90.42 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.96 Total: 10.27 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 6.74 Total: 18.16 kcal Atomic # 7 Polarization: -136.72 SS G_CDS: -6.14 Total: -142.86 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.04 Total: -27.63 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.03 Total: 51.65 kcal Total: -93.96 3.54 -90.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050215029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.153 kcal (2) G-P(sol) polarization free energy of solvation -93.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds