Wall clock time and date at job start Tue Mar 31 2020 18:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34259 * 125.74964 * 2 1 4 4 C 1.38046 * 107.41246 * 180.02562 * 3 2 1 5 5 C 1.47424 * 126.41177 * 179.97438 * 4 3 2 6 6 O 1.21606 * 120.00282 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00019 * 180.02562 * 5 4 3 8 8 C 1.47022 * 125.64851 * 359.68999 * 7 5 4 9 9 C 1.54311 * 107.27779 * 180.96999 * 8 7 5 10 10 C 1.55158 * 102.86351 * 22.52616 * 9 8 7 11 11 H 1.09001 * 111.03268 * 82.39239 * 10 9 8 12 12 N 1.46898 * 111.00616 * 206.22677 * 10 9 8 13 13 C 1.46893 * 111.00178 * 297.95762 * 12 10 9 14 14 C 1.53241 * 109.34170 * 172.74549 * 13 12 10 15 15 N 1.47081 * 108.52199 * 53.82298 * 14 13 12 16 16 C 1.36941 * 120.87730 * 128.83682 * 15 14 13 17 17 H 1.07998 * 120.00047 * 333.48671 * 16 15 14 18 18 C 1.38810 * 119.99451 * 153.49122 * 16 15 14 19 19 N 1.31623 * 119.99659 * 159.44408 * 18 16 15 20 20 Si 1.86793 * 120.00312 * 339.43981 * 18 16 15 21 21 H 1.48505 * 109.47506 * 91.97890 * 20 18 16 22 22 H 1.48506 * 109.47594 * 211.98073 * 20 18 16 23 23 H 1.48507 * 109.47088 * 331.98078 * 20 18 16 24 24 C 1.47077 * 118.23729 * 308.81911 * 15 14 13 25 25 C 1.46895 * 111.00266 * 173.64670 * 12 10 9 26 26 C 1.47426 * 125.64777 * 180.02562 * 7 5 4 27 27 C 1.41292 * 107.17242 * 0.02562 * 4 3 2 28 28 N 1.30446 * 108.02514 * 359.97438 * 27 4 3 29 29 H 1.08999 * 109.47426 * 89.99996 * 1 2 3 30 30 H 1.09003 * 109.46549 * 209.99414 * 1 2 3 31 31 H 1.08994 * 109.47091 * 329.98936 * 1 2 3 32 32 H 1.07995 * 126.29588 * 359.76440 * 3 2 1 33 33 H 1.09008 * 109.88254 * 300.51657 * 8 7 5 34 34 H 1.09003 * 109.88222 * 61.67754 * 8 7 5 35 35 H 1.08998 * 110.92822 * 264.11216 * 9 8 7 36 36 H 1.09002 * 110.59436 * 140.78591 * 9 8 7 37 37 H 1.09007 * 109.49366 * 292.70226 * 13 12 10 38 38 H 1.08995 * 109.50050 * 52.78387 * 13 12 10 39 39 H 1.09000 * 109.62637 * 294.11570 * 14 13 12 40 40 H 1.09000 * 109.78943 * 173.62924 * 14 13 12 41 41 H 0.97002 * 119.99499 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.62973 * 291.47397 * 24 15 14 43 43 H 1.09007 * 109.78874 * 170.98449 * 24 15 14 44 44 H 1.08997 * 109.49394 * 307.22119 * 25 12 10 45 45 H 1.09005 * 109.48929 * 67.29412 * 25 12 10 46 46 H 1.09003 * 110.36534 * 274.66947 * 26 7 5 47 47 H 1.08999 * 110.36743 * 36.99540 * 26 7 5 48 48 H 1.07996 * 125.98703 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5598 0.6553 -0.0006 5 6 4.7637 1.5062 -0.0013 6 8 4.6525 2.7171 -0.0019 7 7 5.9877 0.9419 -0.0024 8 6 6.2658 -0.5017 0.0036 9 6 7.7992 -0.6731 0.0247 10 6 8.2897 0.6780 0.6089 11 1 8.2303 0.6783 1.6973 12 7 9.6547 0.9817 0.1589 13 6 10.6027 -0.0377 0.6278 14 6 11.9738 0.2132 -0.0088 15 7 12.3690 1.6031 0.2654 16 6 13.5956 1.8923 0.8014 17 1 14.1046 1.1604 1.4110 18 6 14.1844 3.1261 0.5613 19 7 15.1283 3.5720 1.3630 20 14 13.6373 4.1537 -0.8995 21 1 12.5547 5.0782 -0.4768 22 1 14.7886 4.9404 -1.4104 23 1 13.1335 3.2595 -1.9728 24 6 11.4122 2.6741 -0.0516 25 6 10.0632 2.3263 0.5867 26 6 7.2696 1.6702 -0.0027 27 6 3.5311 -0.7573 -0.0016 28 7 2.2827 -1.1357 -0.0010 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8898 0.5140 32 1 1.9166 2.1170 -0.0036 33 1 5.8274 -0.9600 0.8902 34 1 5.8556 -0.9620 -0.8954 35 1 8.1882 -0.8216 -0.9826 36 1 8.0836 -1.5004 0.6750 37 1 10.6898 0.0183 1.7129 38 1 10.2444 -1.0266 0.3419 39 1 11.9118 0.0558 -1.0856 40 1 12.7095 -0.4679 0.4190 41 1 15.5395 4.4344 1.1953 42 1 11.2962 2.7533 -1.1325 43 1 11.7730 3.6217 0.3484 44 1 9.3136 3.0519 0.2710 45 1 10.1577 2.3495 1.6724 46 1 7.5577 1.9306 -1.0212 47 1 7.1966 2.5668 0.6128 48 1 4.3919 -1.4095 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051976817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:14 Heat of formation + Delta-G solvation = 76.936176 kcal Electronic energy + Delta-G solvation = -28863.794484 eV Core-core repulsion = 24956.114277 eV Total energy + Delta-G solvation = -3907.680207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.43849 -40.96621 -39.73784 -38.15124 -35.91560 -34.43368 -33.61617 -32.22606 -31.84434 -31.15686 -30.04138 -28.31216 -27.26052 -25.39343 -24.83251 -24.04248 -22.56737 -22.18382 -21.59344 -20.92980 -20.50116 -18.87617 -18.48623 -17.70217 -17.19466 -17.04924 -16.67162 -16.35505 -15.94836 -15.75434 -15.69766 -15.48700 -15.38764 -15.11953 -14.77328 -14.39197 -14.24796 -14.07958 -13.90897 -13.71476 -13.65895 -13.45931 -13.41337 -13.30538 -12.76707 -12.51860 -12.36371 -12.18685 -12.09437 -12.06005 -11.77517 -11.66357 -11.50798 -11.38508 -10.99110 -10.71588 -10.61319 -9.89820 -9.55474 -9.39849 -8.89099 -8.16586 -5.47293 0.48503 1.12775 1.30464 1.41516 1.42155 1.50968 1.93962 2.38939 2.41722 2.87798 3.07681 3.31883 3.38446 3.58078 3.70006 3.79473 3.98428 4.08254 4.13383 4.15250 4.23651 4.30360 4.38182 4.41835 4.45276 4.47662 4.53677 4.56920 4.60399 4.69742 4.70252 4.74457 4.78583 4.83878 4.91587 4.97598 5.03853 5.09150 5.21509 5.28378 5.33752 5.40995 5.83591 5.83817 6.05906 6.09788 6.21476 6.46766 6.53649 6.90586 7.15267 7.61984 8.04681 9.03181 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030036 B = 0.002311 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.000480 B =12113.012714 C =12760.807353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.361 5.361 3 C 0.133 3.867 4 C -0.315 4.315 5 C 0.605 3.395 6 O -0.597 6.597 7 N -0.613 5.613 8 C 0.094 3.906 9 C -0.115 4.115 10 C 0.071 3.929 11 H 0.053 0.947 12 N -0.523 5.523 13 C 0.055 3.945 14 C 0.145 3.855 15 N -0.624 5.624 16 C -0.245 4.245 17 H 0.055 0.945 18 C -0.037 4.037 19 N -0.957 5.957 20 Si 0.946 3.054 21 H -0.276 1.276 22 H -0.311 1.311 23 H -0.263 1.263 24 C 0.127 3.873 25 C 0.052 3.948 26 C 0.120 3.880 27 C 0.075 3.925 28 N -0.324 5.324 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.206 0.794 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.022 0.978 38 H 0.112 0.888 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.261 0.739 42 H 0.035 0.965 43 H 0.050 0.950 44 H 0.084 0.916 45 H 0.024 0.976 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.026 -12.576 -3.747 34.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.139 5.139 3 C -0.021 4.021 4 C -0.330 4.330 5 C 0.397 3.603 6 O -0.480 6.480 7 N -0.345 5.345 8 C -0.028 4.028 9 C -0.152 4.152 10 C -0.038 4.038 11 H 0.071 0.929 12 N -0.249 5.249 13 C -0.074 4.074 14 C 0.020 3.980 15 N -0.349 5.349 16 C -0.374 4.374 17 H 0.073 0.927 18 C -0.232 4.232 19 N -0.604 5.604 20 Si 0.775 3.225 21 H -0.203 1.203 22 H -0.240 1.240 23 H -0.187 1.187 24 C 0.001 3.999 25 C -0.078 4.078 26 C -0.003 4.003 27 C -0.111 4.111 28 N -0.144 5.144 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.223 0.777 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.040 0.960 38 H 0.130 0.870 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.042 0.958 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -33.043 -12.881 -4.232 35.716 hybrid contribution 1.169 1.918 0.485 2.298 sum -31.873 -10.963 -3.747 33.914 Atomic orbital electron populations 1.22410 0.70900 1.06659 1.05408 1.48821 1.08683 1.03113 1.53240 1.23298 0.89810 0.94765 0.94201 1.20122 0.92943 0.94118 1.25854 1.17222 0.81876 0.86200 0.74978 1.90751 1.86905 1.16053 1.54243 1.48165 1.04472 1.08991 1.72903 1.22623 0.96694 0.79980 1.03525 1.22764 0.92895 0.95861 1.03721 1.22746 0.87401 0.96509 0.97169 0.92928 1.61920 1.01316 1.01867 1.59755 1.22510 0.92290 0.95822 0.96776 1.21231 0.94344 0.84373 0.98044 1.44570 1.13231 1.02843 1.74226 1.18885 0.94990 1.00687 1.22882 0.92692 1.25873 0.97337 0.99294 1.00664 1.69965 1.31236 1.20621 1.38538 0.85938 0.75849 0.78690 0.82011 1.20315 1.24009 1.18719 1.21403 0.89350 0.91596 0.97502 1.22433 0.96786 0.91414 0.97144 1.22060 0.82107 0.94932 1.01251 1.25072 0.96091 0.93802 0.96153 1.77175 1.02450 1.09031 1.25763 0.88764 0.88192 0.86454 0.77704 0.88887 0.88612 0.88800 0.87457 0.95984 0.87046 0.94327 0.91810 0.93024 0.94733 0.93186 0.89786 0.95801 0.91013 0.92407 0.76265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.32 11.44 127.77 1.46 1.78 16 2 N -0.36 -4.81 3.98 -367.77 -1.46 -6.28 16 3 C 0.13 2.07 11.30 84.28 0.95 3.02 16 4 C -0.32 -6.19 6.09 -20.15 -0.12 -6.32 16 5 C 0.61 15.43 7.85 86.66 0.68 16.11 16 6 O -0.60 -19.97 17.15 -4.05 -0.07 -20.04 16 7 N -0.61 -13.26 3.33 -815.70 -2.71 -15.97 16 8 C 0.09 1.20 4.97 86.72 0.43 1.63 16 9 C -0.11 -1.60 5.35 31.78 0.17 -1.43 16 10 C 0.07 1.57 2.71 46.30 0.13 1.70 16 11 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 12 N -0.52 -14.98 4.53 -861.96 -3.90 -18.89 16 13 C 0.05 1.56 5.48 86.39 0.47 2.04 16 14 C 0.14 5.36 6.69 86.35 0.58 5.94 16 15 N -0.62 -29.50 2.82 -698.13 -1.97 -31.47 16 16 C -0.24 -14.00 10.08 84.03 0.85 -13.15 16 17 H 0.06 3.40 8.05 -2.91 -0.02 3.38 16 18 C -0.04 -2.20 5.24 84.86 0.44 -1.76 16 19 N -0.96 -60.95 13.97 21.65 0.30 -60.65 16 20 Si 0.95 47.78 24.31 68.60 1.67 49.44 16 21 H -0.28 -13.27 6.58 99.48 0.65 -12.62 16 22 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 23 H -0.26 -12.80 6.61 99.48 0.66 -12.15 16 24 C 0.13 5.51 4.35 86.35 0.38 5.89 16 25 C 0.05 1.81 5.48 86.38 0.47 2.28 16 26 C 0.12 2.96 5.31 86.85 0.46 3.42 16 27 C 0.08 1.19 10.45 85.65 0.89 2.09 16 28 N -0.32 -5.61 12.50 -56.28 -0.70 -6.31 16 29 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.21 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.09 0.86 6.86 -2.38 -0.02 0.84 16 34 H 0.10 0.89 6.97 -2.39 -0.02 0.87 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.04 7.94 -2.39 -0.02 1.02 16 37 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.11 2.29 6.87 -2.39 -0.02 2.27 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 2.35 7.95 -2.39 -0.02 2.33 16 41 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.03 1.50 6.94 -2.39 -0.02 1.48 16 43 H 0.05 2.41 4.61 -2.38 -0.01 2.40 16 44 H 0.08 2.65 6.79 -2.39 -0.02 2.63 16 45 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.06 1.64 7.74 -2.39 -0.02 1.62 16 48 H 0.22 2.12 4.47 -2.91 -0.01 2.11 16 Total: -1.00 -81.35 370.51 0.26 -81.09 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 0.86 Total: 5.84 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 8.25 Total: 23.23 kcal Atomic # 7 Polarization: -129.12 SS G_CDS: -10.45 Total: -139.57 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.07 Total: -20.04 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.67 Total: 49.44 kcal Total: -81.35 0.26 -81.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051976817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.023 kcal (2) G-P(sol) polarization free energy of solvation -81.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds