Wall clock time and date at job start Tue Mar 31 2020 18:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35849 * 126.13641 * 2 1 4 4 N 1.30169 * 108.99991 * 180.02562 * 3 2 1 5 5 C 1.35758 * 108.86984 * 0.02562 * 4 3 2 6 6 C 1.47323 * 126.23439 * 179.97438 * 5 4 3 7 7 O 1.21624 * 120.00068 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00184 * 0.03097 * 6 5 4 9 9 C 1.47022 * 125.64971 * 359.96903 * 8 6 5 10 10 C 1.54320 * 107.27303 * 181.08292 * 9 8 6 11 11 C 1.55161 * 102.94323 * 22.19538 * 10 9 8 12 12 H 1.08998 * 111.00177 * 82.57373 * 11 10 9 13 13 N 1.46905 * 111.00283 * 206.42362 * 11 10 9 14 14 C 1.46896 * 111.00175 * 297.94981 * 13 11 10 15 15 C 1.53233 * 109.34116 * 172.74966 * 14 13 11 16 16 N 1.47086 * 108.52138 * 53.82931 * 15 14 13 17 17 C 1.36932 * 120.87694 * 128.79445 * 16 15 14 18 18 H 1.08009 * 119.99619 * 206.93222 * 17 16 15 19 19 C 1.38814 * 120.00374 * 26.93857 * 17 16 15 20 20 N 1.31614 * 119.99910 * 17.11445 * 19 17 16 21 21 Si 1.86799 * 119.99945 * 197.11600 * 19 17 16 22 22 H 1.48507 * 109.47171 * 94.12641 * 21 19 17 23 23 H 1.48496 * 109.47334 * 214.12369 * 21 19 17 24 24 H 1.48498 * 109.47072 * 334.12973 * 21 19 17 25 25 C 1.47078 * 118.23576 * 308.81414 * 16 15 14 26 26 C 1.46907 * 110.99456 * 173.64914 * 13 11 10 27 27 C 1.47430 * 125.65002 * 179.97438 * 8 6 5 28 28 C 1.35383 * 126.13211 * 180.29726 * 2 1 3 29 29 H 1.08997 * 109.46990 * 89.96701 * 1 2 3 30 30 H 1.08996 * 109.47670 * 209.96935 * 1 2 3 31 31 H 1.09002 * 109.47065 * 329.97483 * 1 2 3 32 32 H 1.07999 * 125.49841 * 359.97015 * 3 2 1 33 33 H 1.08999 * 109.88212 * 300.50360 * 9 8 6 34 34 H 1.09005 * 109.87679 * 61.51505 * 9 8 6 35 35 H 1.08998 * 110.72588 * 140.56074 * 10 9 8 36 36 H 1.09000 * 110.72029 * 263.83247 * 10 9 8 37 37 H 1.09006 * 109.49286 * 292.71040 * 14 13 11 38 38 H 1.08998 * 109.49209 * 52.78576 * 14 13 11 39 39 H 1.08999 * 109.62623 * 294.12091 * 15 14 13 40 40 H 1.08999 * 109.63147 * 173.53871 * 15 14 13 41 41 H 0.96997 * 119.99742 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.63043 * 291.47690 * 25 16 15 43 43 H 1.08996 * 109.62560 * 170.89451 * 25 16 15 44 44 H 1.08995 * 109.49110 * 307.21435 * 26 13 11 45 45 H 1.08996 * 109.49009 * 67.26661 * 26 13 11 46 46 H 1.08993 * 110.36602 * 274.68664 * 27 8 6 47 47 H 1.09002 * 110.36562 * 37.00883 * 27 8 6 48 48 H 1.07997 * 126.56440 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7136 -0.0006 5 6 3.5511 -0.6434 -0.0015 6 6 4.7652 -1.4778 -0.0029 7 8 4.6698 -2.6903 -0.0041 8 7 5.9816 -0.8977 -0.0027 9 6 6.2408 0.5495 -0.0018 10 6 7.7718 0.7409 -0.0297 11 6 8.2794 -0.6031 -0.6159 12 1 8.2185 -0.6024 -1.7042 13 7 9.6487 -0.8894 -0.1675 14 6 10.5829 0.1428 -0.6363 15 6 11.9577 -0.0909 -0.0013 16 7 12.3708 -1.4753 -0.2776 17 6 13.6001 -1.7477 -0.8158 18 1 13.7458 -2.6418 -1.4041 19 6 14.6589 -0.8750 -0.6054 20 7 14.5954 0.0155 0.3616 21 14 16.1737 -0.9647 -1.6947 22 1 16.0373 0.0029 -2.8129 23 1 17.3792 -0.6299 -0.8948 24 1 16.3089 -2.3383 -2.2425 25 6 11.4283 -2.5590 0.0393 26 6 10.0742 -2.2282 -0.5974 27 6 7.2729 -1.6091 -0.0034 28 6 2.2633 -1.0934 -0.0057 29 1 -0.3633 0.0006 -1.0276 30 1 -0.3634 -0.8902 0.5133 31 1 -0.3633 0.8898 0.5142 32 1 1.9258 2.1221 -0.0005 33 1 5.7939 1.0067 -0.8846 34 1 5.8250 0.9999 0.8996 35 1 8.0449 1.5725 -0.6793 36 1 8.1599 0.8933 0.9774 37 1 10.6696 0.0891 -1.7216 38 1 10.2119 1.1266 -0.3489 39 1 11.8948 0.0644 1.0757 40 1 12.6823 0.6002 -0.4320 41 1 15.3354 0.6251 0.5088 42 1 11.3144 -2.6409 1.1202 43 1 11.8027 -3.4996 -0.3646 44 1 9.3344 -2.9638 -0.2818 45 1 10.1675 -2.2490 -1.6832 46 1 7.5651 -1.8660 1.0147 47 1 7.2113 -2.5065 -0.6192 48 1 1.9421 -2.1245 -0.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052012144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:55 Heat of formation + Delta-G solvation = 78.090138 kcal Electronic energy + Delta-G solvation = -28736.010922 eV Core-core repulsion = 24828.380755 eV Total energy + Delta-G solvation = -3907.630167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.49868 -39.84603 -38.26155 -36.62205 -34.59271 -34.00060 -31.60042 -30.32674 -30.19982 -29.90226 -28.55147 -27.50222 -25.92405 -24.12103 -22.81719 -22.73212 -21.66402 -21.49532 -20.22938 -19.40462 -19.07016 -17.71473 -16.99059 -16.51749 -16.35070 -16.00688 -15.37740 -14.90489 -14.64059 -14.37322 -14.25631 -14.08740 -13.83374 -13.75366 -13.40554 -13.33643 -13.30668 -13.21645 -13.04135 -12.58069 -12.43825 -12.21133 -11.69272 -11.20988 -11.09982 -10.98259 -10.73071 -10.70474 -10.50123 -10.34836 -10.21686 -10.14699 -10.05658 -9.97010 -9.66836 -9.52633 -9.01340 -8.49057 -8.46240 -7.80429 -6.61253 -5.73669 -3.14587 1.32336 2.14809 2.21171 3.02718 3.40889 3.44290 3.47923 3.49441 4.07267 4.13071 4.37962 4.39498 4.50625 4.54401 4.56774 4.77979 4.85346 4.91327 5.13468 5.25646 5.42449 5.43824 5.48181 5.58464 5.63343 5.78804 5.91062 5.95626 5.96803 6.04338 6.09553 6.12194 6.22019 6.26307 6.31491 6.40626 6.43377 6.59887 6.63352 6.75875 6.99681 7.29402 7.42321 7.57760 7.66099 7.69518 7.75418 7.86830 8.20719 8.48425 9.26184 9.89588 10.48489 11.35191 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.038457 B = 0.002104 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.908850 B =13306.510690 C =13776.254831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.462 5.462 3 C 0.182 3.818 4 N -0.457 5.457 5 C -0.055 4.055 6 C 0.615 3.385 7 O -0.550 6.550 8 N -0.603 5.603 9 C 0.120 3.880 10 C -0.127 4.127 11 C 0.069 3.931 12 H 0.049 0.951 13 N -0.521 5.521 14 C 0.037 3.963 15 C 0.179 3.821 16 N -0.596 5.596 17 C -0.250 4.250 18 H 0.066 0.934 19 C 0.000 4.000 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.149 3.851 26 C 0.041 3.959 27 C 0.118 3.882 28 C 0.031 3.969 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.211 0.789 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.024 0.976 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.087 0.913 41 H 0.253 0.747 42 H 0.026 0.974 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.028 0.972 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.178 4.156 -0.828 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.144 5.144 3 C -0.102 4.102 4 N -0.176 5.176 5 C -0.184 4.184 6 C 0.403 3.597 7 O -0.428 6.428 8 N -0.335 5.335 9 C -0.003 4.003 10 C -0.165 4.165 11 C -0.041 4.041 12 H 0.067 0.933 13 N -0.246 5.246 14 C -0.092 4.092 15 C 0.053 3.947 16 N -0.319 5.319 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.023 3.977 26 C -0.088 4.088 27 C -0.005 4.005 28 C -0.107 4.107 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.228 0.772 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -29.566 4.111 -0.265 29.851 hybrid contribution -0.052 -0.311 -1.448 1.482 sum -29.618 3.800 -1.713 29.910 Atomic orbital electron populations 1.22147 0.75826 1.05174 1.04061 1.45365 1.08240 1.06944 1.53866 1.25267 0.85272 0.93592 1.06061 1.70746 1.19107 1.10375 1.17386 1.20488 0.92936 0.90524 1.14453 1.16494 0.80853 0.85934 0.76373 1.90798 1.86332 1.13298 1.52386 1.48152 1.05014 1.08539 1.71824 1.22019 0.95271 0.80261 1.02734 1.22770 0.93521 0.97169 1.03021 1.22747 0.89882 0.94666 0.96802 0.93277 1.62014 0.99688 1.03256 1.59629 1.22902 0.95565 0.93318 0.97441 1.20858 0.89664 0.87113 0.97108 1.44125 1.14020 1.00422 1.73320 1.19214 0.86082 1.08336 1.24328 0.91668 1.25023 0.97291 1.00142 0.97336 1.70034 1.32051 1.23194 1.29508 0.86275 0.82642 0.77758 0.80109 1.21582 1.21797 1.20460 1.20973 0.87899 0.92021 0.96839 1.22672 0.98866 0.89564 0.97714 1.22241 0.81011 0.95154 1.02091 1.22581 0.90163 0.93205 1.04794 0.90086 0.89255 0.88976 0.77225 0.91004 0.90800 0.90312 0.89392 0.95729 0.91844 0.95505 0.89453 0.93679 0.95581 0.92626 0.91826 0.95363 0.90093 0.90699 0.79520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.10 11.15 59.85 0.67 0.77 16 2 N -0.46 -2.85 3.13 -125.78 -0.39 -3.24 16 3 C 0.18 1.30 12.55 -89.91 -1.13 0.17 16 4 N -0.46 -5.03 8.77 -11.03 -0.10 -5.13 16 5 C -0.05 -0.68 6.82 -83.09 -0.57 -1.25 16 6 C 0.61 9.37 7.84 -12.57 -0.10 9.27 16 7 O -0.55 -9.74 17.14 5.26 0.09 -9.65 16 8 N -0.60 -8.75 3.33 -171.81 -0.57 -9.32 16 9 C 0.12 1.50 5.52 -3.07 -0.02 1.48 16 10 C -0.13 -1.64 5.34 -24.90 -0.13 -1.77 16 11 C 0.07 1.04 2.72 -65.55 -0.18 0.86 16 12 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 13 N -0.52 -9.34 4.53 -223.76 -1.01 -10.35 16 14 C 0.04 0.72 5.48 -3.71 -0.02 0.70 16 15 C 0.18 4.34 5.42 -3.60 -0.02 4.32 16 16 N -0.60 -15.32 3.04 -172.02 -0.52 -15.84 16 17 C -0.25 -6.98 9.63 -15.06 -0.14 -7.13 16 18 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 19 C 0.00 0.01 4.93 -17.43 -0.09 -0.07 16 20 N -0.90 -26.48 11.19 55.49 0.62 -25.86 16 21 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.15 3.26 6.69 -3.60 -0.02 3.24 16 26 C 0.04 0.76 5.48 -3.70 -0.02 0.74 16 27 C 0.12 1.76 5.32 -2.52 -0.01 1.75 16 28 C 0.03 0.29 11.26 -16.64 -0.19 0.10 16 29 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 30 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 32 H 0.21 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.07 0.88 7.63 -51.93 -0.40 0.49 16 34 H 0.07 0.91 7.74 -51.93 -0.40 0.51 16 35 H 0.08 0.93 7.94 -51.93 -0.41 0.52 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.10 6.87 -51.93 -0.36 0.75 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 2.34 6.15 -51.93 -0.32 2.02 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 44 H 0.06 1.05 6.79 -51.93 -0.35 0.69 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.07 1.16 7.74 -51.93 -0.40 0.76 16 48 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -35.08 380.68 -10.82 -45.90 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.68 Total: -2.37 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -1.97 Total: 13.17 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -1.98 Total: -69.75 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.08 -10.82 -45.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052012144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.992 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds